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2020-08-20gnu: r-oligoclasses: Update to 1.50.4....* gnu/packages/bioconductor.scm (r-oligoclasses): Update to 1.50.4. Ricardo Wurmus
2020-08-20gnu: bind: Update to 9.16.6 [multiple CVE fixes]....Fixes CVE-2020-8620, CVE-2020-8621, CVE-2020-8622, CVE-2020-8623, and CVE-2020-8624. * gnu/packages/dns.scm (isc-bind): Update to 9.16.6. Tobias Geerinckx-Rice
2020-08-20gnu: perl-catalyst-plugin-configloader: Update to 0.35....* gnu/packages/web.scm (perl-catalyst-plugin-configloader): Update to 0.35. Tobias Geerinckx-Rice
2020-08-20gnu: perl-catalyst-devel: Update to 1.41....* gnu/packages/web.scm (perl-catalyst-devel): Update to 1.41. Tobias Geerinckx-Rice
2020-08-20gnu: ne: Update to 3.3.0....* gnu/packages/text-editors.scm (ne): Update to 3.3.0. Tobias Geerinckx-Rice
2020-08-20gnu: p11-kit: Update to 0.23.21....* gnu/packages/tls.scm (p11-kit): Update to 0.23.21. Tobias Geerinckx-Rice
2020-08-20gnu: r-pbapply: Update to 1.4-3....* gnu/packages/statistics.scm (r-pbapply): Update to 1.4-3. Ricardo Wurmus
2020-08-20gnu: r-chron: Update to 2.3-56....* gnu/packages/statistics.scm (r-chron): Update to 2.3-56. Ricardo Wurmus
2020-08-20gnu: r-dplyr: Update to 1.0.2....* gnu/packages/statistics.scm (r-dplyr): Update to 1.0.2. Ricardo Wurmus
2020-08-20gnu: r-mgcv: Update to 1.8-32....* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-32. Ricardo Wurmus
2020-08-20gnu: r-mass: Update to 7.3-52....* gnu/packages/statistics.scm (r-mass): Update to 7.3-52. Ricardo Wurmus
2020-08-20gnu: r-stanheaders: Update to 2.21.0-6....* gnu/packages/cran.scm (r-stanheaders): Update to 2.21.0-6. Ricardo Wurmus
2020-08-20gnu: r-showtext: Update to 0.9....* gnu/packages/cran.scm (r-showtext): Update to 0.9. Ricardo Wurmus
2020-08-20gnu: r-haplo-stats: Update to 1.8.2....* gnu/packages/cran.scm (r-haplo-stats): Update to 1.8.2. [propagated-inputs]: Add r-arsenal. Ricardo Wurmus
2020-08-20gnu: r-emmeans: Update to 1.5.0....* gnu/packages/cran.scm (r-emmeans): Update to 1.5.0. Ricardo Wurmus
2020-08-20gnu: r-abjutils: Update to 0.3.1....* gnu/packages/cran.scm (r-abjutils): Update to 0.3.1. [propagated-inputs]: Remove r-devtools, r-furrr, r-future, r-glue, r-httr, r-progress, r-readr, r-scales, and r-tibble. Ricardo Wurmus
2020-08-20gnu: r-hdf5r: Update to 1.3.3....* gnu/packages/cran.scm (r-hdf5r): Update to 1.3.3. Ricardo Wurmus
2020-08-20gnu: r-hardyweinberg: Update to 1.6.6....* gnu/packages/cran.scm (r-hardyweinberg): Update to 1.6.6. Ricardo Wurmus
2020-08-20gnu: r-jomo: Update to 2.7-2....* gnu/packages/cran.scm (r-jomo): Update to 2.7-2. Ricardo Wurmus
2020-08-20gnu: r-ape: Update to 5.4-1....* gnu/packages/cran.scm (r-ape): Update to 5.4-1. Ricardo Wurmus
2020-08-20gnu: Add r-arsenal....* gnu/packages/cran.scm (r-arsenal): New variable. Ricardo Wurmus
2020-08-20gnu: python-fpylll: Update to 0.5.2....* gnu/packages/algebra.scm (python-fpylll): Update to 0.5.2. Andreas Enge
2020-08-20gnu: fplll: Update to 5.3.2....* gnu/packages/algebra.scm (fplll): Update to 5.3.2. Andreas Enge
2020-08-20gnu: python-libtmux: Update to 0.8.3....* gnu/packages/tmux.scm (python-libtmux): Update to 0.8.3. Tobias Geerinckx-Rice
2020-08-20gnu: vis: Run most tests....* gnu/packages/text-editors.scm (vis)[arguments]: Add ‘unpack-test-suite’ and ‘set-up-tests’ phase. Run the tests after wrapping vis. [native-inputs]: Add vis-test origin. Tobias Geerinckx-Rice
2020-08-20gnu: vis: Fetch sources from git....* gnu/packages/text-editors.scm (vis)[source]: Use GIT-FETCH and GIT-FILE-NAME. Tobias Geerinckx-Rice
2020-08-20gnu: vis: Update to 0.6....* gnu/packages/text-editors.scm (vis): Update to 0.6. Tobias Geerinckx-Rice
2020-08-20gnu: emacs-browse-at-remote: Update to 0.14.0....* gnu/packages/emacs-xyz.scm (emacs-browse-at-remote): Update to 0.14.0. Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com> Michael Rohleder
2020-08-20gnu: emacs-perspective: Update to 2.10....* gnu/packages/emacs-xyz.scm (emacs-perspective): Update to 2.10. (arguments): Run tests suite. Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com> Michael Rohleder
2020-08-20gnu: emacs-ob-restclient: Update to 0.02-2.f7449b2....* gnu/packages/emacs-xyz.scm (emacs-ob-restclient): Update to 0.02-2.f7449b2. Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com> Michael Rohleder
2020-08-20gnu: emacs-visual-regexp: Update to 1.1.2....* gnu/packages/emacs-xyz.scm (emacs-visual-regexp): Update to 1.1.2. Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com> Michael Rohleder
2020-08-20gnu: keepassxc: Update to 2.6.1....* gnu/packages/password-utils.scm (keepassxc): Update to 2.6.1. Nicolas Goaziou
2020-08-20gnu: emacs-org-superstar: Update to 1.4.0....* gnu/packages/emacs-xyz.scm (emacs-org-superstar): Update to 1.4.0. Nicolas Goaziou
2020-08-20gnu: ccextractor: Fix build....* gnu/packages/gstreamer.scm (ccextractor): Add LEPTONICA to inputs. Jakub Kądziołka
2020-08-20gnu: chrony: Update to 3.5.1 [fixes CVE-2020-14367]....* gnu/packages/ntp.scm (chrony): Update to 3.5.1. Tobias Geerinckx-Rice
2020-08-20gnu: grammalecte: Update to 1.12.0....* gnu/packages/dictionaries.scm (grammalecte): Update to 1.12.0. Nicolas Goaziou
2020-08-20gnu: emacs-doom-modeline: Update to 3.0.0....* gnu/packages/emacs-xyz.scm (emacs-doom-modeline): Update to 3.0.0. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Morgan Smith
2020-08-20gnu: blender: Add colour management support....* gnu/packages/graphics.scm (blender)[inputs]: Add opencolorio. Tobias Geerinckx-Rice
2020-08-20gnu: Add opencolorio....* gnu/packages/image-processing.scm (opencolorio): New public variable. Tobias Geerinckx-Rice
2020-08-20gnu: wireshark: Update to 3.2.6....* gnu/packages/networking.scm (wireshark): Update to 3.2.6. Tobias Geerinckx-Rice
2020-08-20gnu: libostree: Update to 2020.5....* gnu/packages/package-management.scm (libostree): Update to 2020.5. Tobias Geerinckx-Rice
2020-08-20gnu: iperf: Update to 3.9....* gnu/packages/networking.scm (iperf): Update to 3.9. Tobias Geerinckx-Rice
2020-08-20gnu: nng: Update to 1.3.2....* gnu/packages/networking.scm (nng): Update to 1.3.2. Tobias Geerinckx-Rice
2020-08-20gnu: mate-power-manager: Update to 1.24.2....* gnu/packages/mate.scm (mate-power-manager): Update to 1.24.2. [source]: Hard-code NAME. Tobias Geerinckx-Rice
2020-08-19gnu: agda: Adjust for using shared libraries....See also 9e5496e0ae0ee8f638ca93949ecca314fdb9251e. * gnu/packages/agda.scm (agda)[arguments]: Add a phase that sets 'LD_LIBRARY_PATH'; update the 'configure' phase to match the current Haskell build system code. Timothy Sample
2020-08-19gnu: ganeti: Tell GHC to use shared libraries....Fixes <https://bugs.gnu.org/42934>. Reported by Marius Bakke <marius@gnu.org>. * gnu/packages/virtualization.scm (ganeti)[arguments]: Add a phase that tells GHC to use shared libraries. Timothy Sample
2020-08-19gnu: ghc-regex-pcre: Set '#:extra-directories'....This is a follow-up to commit 54a5fd0791f15108d7c06f0b439e75e049fde249. * gnu/packages/haskell-xyz.scm (ghc-regex-pcre)[arguments]: Set '#:extra-directories'. Timothy Sample
2020-08-19gnu: ghc-pcre-light: Set '#:extra-directories'....This is a follow-up to commit 54a5fd0791f15108d7c06f0b439e75e049fde249. * gnu/packages/haskell-xyz.scm (ghc-pcre-light)[arguments]: Set '#:extra-directories'. Timothy Sample
2020-08-20gnu: blender: Update to 2.83.5....* gnu/packages/graphics.scm (blender): Update to 2.83.5. Tobias Geerinckx-Rice
2020-08-20gnu: xtl: Update to 0.6.16....* gnu/packages/cpp.scm (xtl): Update to 0.6.16. Tobias Geerinckx-Rice
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