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2020-04-14gnu: r-backports: Update to 1.1.6.•••* gnu/packages/statistics.scm (r-backports): Update to 1.1.6. Ricardo Wurmus
2020-04-14gnu: r-xml2: Update to 1.3.1.•••* gnu/packages/statistics.scm (r-xml2): Update to 1.3.1. Ricardo Wurmus
2020-04-14gnu: r-gdtools: Update to 0.2.2.•••* gnu/packages/statistics.scm (r-gdtools): Update to 0.2.2. Ricardo Wurmus
2020-04-14gnu: r-reshape2: Update to 1.4.4.•••* gnu/packages/statistics.scm (r-reshape2): Update to 1.4.4. Ricardo Wurmus
2020-04-14gnu: r-survival: Update to 3.1-12.•••* gnu/packages/statistics.scm (r-survival): Update to 3.1-12. Ricardo Wurmus
2020-04-14gnu: r-nlme: Update to 3.1-147.•••* gnu/packages/statistics.scm (r-nlme): Update to 3.1-147. Ricardo Wurmus
2020-04-14gnu: Add rkdeveloptool.•••* gnu/packages/hardware.scm (rkdeveloptool): New variable. Jan (janneke) Nieuwenhuizen
2020-04-14doc: Improve anchor collection.•••This allows us to catch "operating_002dsystem-1", for instance. * doc/build.scm (syntax-highlighted-html)[build](anchor-id->key): Drop "-1" & co. from ID. Ludovic Courtès
2020-04-14doc: Avoid invalid 'match' pattern in 'syntax-highlighted-html'.•••This is a followup to da9deba13d551e316f5a99a614834efa27ddc7d1. Last-minute modification of the 'match' pattern would lead to an error: "multiple ellipsis patterns not allowed at same level" * doc/build.scm (syntax-highlighted-html)[build](collect-anchors): Add 'worthy-entry?' procedure and use it instead of the unsupported pattern for ('dt ...). Ludovic Courtès
2020-04-14doc: Emit hyperlinks in HTML output for @lisp snippets.•••This makes it easier to jump to the definition of a procedure or variable when looking at a code snippet. There can be false-positive because scoping rules are ignored, for example, but it should be a good approximation. * doc/build.scm (syntax-highlighted-html)[build](highlights->sxml*): Add 'anchors' parameter. Add clause for ('symbol text). (syntax-highlight): Add 'anchors' parameter. Wrap body in named let and use it in recursive calls. Pass ANCHORS to 'highlights->sxml*'. (underscore-decode, anchor-id->key, collect-anchors, html?): New procedures. (process-file): Add 'anchors' parameter. and honor it. Rewrite mono-node and multi-node HTML files separately. Ludovic Courtès
2020-04-14weather: Delete duplicate entries coming from '--manifest'.•••* guix/scripts/weather.scm (load-manifest): Call 'delete-duplicates'. Ludovic Courtès
2020-04-14maint: Ensure substitutes are available for '%default-xorg-modules'.•••* etc/release-manifest.scm (%system-packages): Append %DEFAULT-XORG-MODULES. Ludovic Courtès
2020-04-14maint: Actually check for the availablility of system packages.•••* etc/release-manifest.scm (%system-manifest): New variable. <top level>: Add it in 'concatenate-manifests' call. Ludovic Courtès
2020-04-14gnu: Add moptilities.•••* gnu/packages/lisp-xyz.scm (cl-moptilities, sbcl-moptilities): New variables. Pierre Neidhardt
2020-04-14gnu: Add perl-authen-passphrase.•••* gnu/packages/perl.scm (perl-authen-passphrase): New variable. Paul Garlick
2020-04-14gnu: Add perl-digest-md4.•••* gnu/packages/perl.scm (perl-digest-md4): New variable. Paul Garlick
2020-04-14gnu: Add perl-crypt-des.•••* gnu/packages/perl.scm (perl-crypt-des): New variable. Paul Garlick
2020-04-14gnu: Add perl-crypt-cbc.•••* gnu/packages/perl.scm (perl-crypt-cbc): New variable. Paul Garlick
2020-04-14gnu: Add perl-crypt-mysql.•••* gnu/packages/perl.scm (perl-crypt-mysql): New variable. Paul Garlick
2020-04-14gnu: Add perl-crypt-passwdmd5.•••* gnu/packages/perl.scm (perl-crypt-passwdmd5): New variable. Paul Garlick
2020-04-14gnu: Add perl-crypt-unixcrypt_xs.•••* gnu/packages/perl.scm (perl-crypt-unixcrypt_xs): New variable. Paul Garlick
2020-04-14gnu: sbcl-cl-str: Update to 0.17.•••* gnu/packages/lisp-xyz.scm (sbcl-cl-str): Update to 0.17. Pierre Neidhardt
2020-04-14gnu: Add cl-change-case.•••* gnu/packages/lisp-xyz.scm (cl-change-case, sbcl-cl-change-case): New variables. Pierre Neidhardt
2020-04-14installer: Only load uvesafb kernel module when needed.•••This is a follow-up to commit 557e6820a77b24f8f3f03f28ee473137b1caeb64. * gnu/system/install.scm (uvesafb-shepherd-service): Check that /dev/fb0 is not already present. Florian Pelz
2020-04-14gnu: xen: Update to 4.13.0.•••* gnu/packages/virtualization.scm (xen): Update to 4.13.0. Danny Milosavljevic
2020-04-14gnu: pigx-chipseq: Update to 0.0.42.•••* gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.0.42. Ricardo Wurmus
2020-04-14nls: Update.Ludovic Courtès
2020-04-14installer: Open manual in the selected language on tty2.•••Fixes <https://bugs.gnu.org/40624>. Reported by Florian Pelz <pelzflorian@pelzflorian.de>. Regression introduced in b5c2d93d7a223155898dd0ed6932f6acf78ac454. * gnu/installer.scm (apply-locale): Remove 'lambda' around 'stop-service' and 'start-service' calls. Ludovic Courtès
2020-04-14gnu: xen: Fix build failure.•••* gnu/packages/virtualization.scm (xen)[arguments]<#:phases>[set-environment-up]: Use CPATH instead of C_INCLUDE_PATH, CPLUS_INCLUDE_PATH. Danny Milosavljevic
2020-04-14gnu: sbcl-ironclad: Update to 0.49.•••* gnu/packages/lisp-xyz.scm (sbcl-ironclad): Update to 0.49. [inputs]: Add trivial-garbage. Guillaume Le Vaillant
2020-04-14gnu: Add emacs-typit.•••* gnu/packages/emacs-xyz.scm (emacs-typit): New variable. Alberto Eleuterio Flores Guerrero
2020-04-14gnu: Add emacs-mmt.•••* gnu/packages/emacs-xyz.scm (emacs-mmt): New variable. Alberto Eleuterio Flores Guerrero
2020-04-14gnu: Add emacs-uml-mode.•••* gnu/packages/emacs-xyz.scm (emacs-uml-mode): New variable. Alberto EFG
2020-04-14gnu: Add emacs-org-roam.•••* gnu/packages/emacs-xyz.scm (emacs-org-roam): New variable. Alberto Eleuterio Flores Guerrero
2020-04-14gnu: Add blobwars.•••* gnu/packages/games.scm (blobwars): New variable. Alberto Eleuterio Flores Guerrero
2020-04-14gnu: emacs-org-make-toc: Update to 0.5.•••* gnu/packages/emacs-xyz.scm (emacs-org-make-toc): Update to 0.5. Pierre Neidhardt
2020-04-14gnu: volk: Update to 2.2.1.•••* gnu/packages/engineering.scm (volk): Update to 2.2.1. [source]: Download using https. [arguments]: Add phase to wrap binary in PYTHONPATH. [native-inputs]: Remove python-2, python2-cheetah. Add python-wrapper, python-mako. [home-page]: Use https. Efraim Flashner
2020-04-14gnu: kawa: Update to 3.1.1.•••* gnu/packages/kawa.scm (kawa): Update to 3.1.1. Tobias Geerinckx-Rice
2020-04-14gnu: kawa: Wrap to find java.•••* gnu/packages/kawa.scm (kawa)[arguments]: Add ‘wrap-kawa’ phase to set JAVA_HOME. Tobias Geerinckx-Rice
2020-04-13gnu: webkitgtk: Update to 2.28.1.•••* gnu/packages/webkit.scm (webkitgtk): Update to 2.28.1. Mark H Weaver
2020-04-13gnu: Add python-diceware.•••* gnu/packages/python-xyz.scm (python-diceware): New public variables. Signed-off-by: Leo Famulari <leo@famulari.name> Matthew Kraai
2020-04-14gnu: emacs-org-ref: Update to 5bb9be2232db72b04754d7e4c02a3976ad422f6f.•••* gnu/packages/emacs-xyz.scm (emacs-org-ref): Update to 5bb9be2232db72b04754d7e4c02a3976ad422f6f. [version]: Use `git-version'. [propagated-inputs]: Add "emacs-htmlize". Sort alphabetically. [description]: Expound it. Nicolas Goaziou
2020-04-13gnu: MPD: Update to 0.21.22.•••* gnu/packages/mpd.scm (mpd): Update to 0.21.22. Leo Famulari
2020-04-13gnu: Mutt: Update to 1.13.5.•••* gnu/packages/mail.scm (mutt): Update to 1.13.5. Leo Famulari
2020-04-13gnu: linux-libre: Update to 5.4.32.•••* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.32. (linux-libre-5.4-pristine-source): Update hash. Mark H Weaver
2020-04-13gnu: linux-libre@5.6: Update to 5.6.4.•••* gnu/packages/linux.scm (linux-libre-5.6-version): Update to 5.6.4. (linux-libre-5.6-pristine-source): Update hash. Mark H Weaver
2020-04-13gnu: linux-libre@4.19: Update to 4.19.115.•••* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.115. (linux-libre-4.19-pristine-source): Update hash. Mark H Weaver
2020-04-13gnu: linux-libre@4.14: Update to 4.14.176.•••* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.176. (linux-libre-4.14-pristine-source): Update hash. Mark H Weaver
2020-04-13gnu: linux-libre@4.9: Update to 4.9.219.•••* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.219. (linux-libre-4.9-pristine-source): Update hash. Mark H Weaver
2020-04-13gnu: linux-libre@4.4: Update to 4.4.219.•••* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.219. (linux-libre-4.4-pristine-source): Update hash. Mark H Weaver
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