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2022-12-02gnu: QtWebEngine: Use more system libraries.Marius Bakke
* gnu/packages/qt.scm (qtwebengine)[source](snippet): Remove more files. [arguments]: Pass QT_FEATURES_system_foo for all supported libraries. [inputs]: Replace "harfbuzz" with HARFBUZZ-5.
2022-12-02gnu: python-biom-format: Update to 2.1.12.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-biom-format): Update to 2.1.12. [arguments]: Remove "relax" phase; update "disable-broken-tests" phase. [propagated-inputs]: Add python-scikit-bio.
2022-12-02gnu: Add python-scikit-bio.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-scikit-bio): New variable.
2022-12-02gnu: Add python-hdmedians.Ricardo Wurmus
* gnu/packages/statistics.scm (python-hdmedians): New variable.
2022-12-02gnu: python-pairtools: Update to 1.0.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-pairtools): Update to 1.0.2. [source]: Update Github URL. [arguments]: Update patch in "fix-references" phase. [native-inputs]: Remove python-nose. [inputs]: Remove. [propagated-inputs]: Add python-bioframe, python-pandas, python-pysam, python-pyyaml, and python-scipy. [home-page]: Update.
2022-12-02gnu: python-pairtools: Run tests conditionally.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-pairtools)[arguments]: Run tests conditionally.
2022-12-02gnu: python-pybedtools: Use pyproject-build-system.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-pybedtools)[build-system]: Use pyproject-build-system. [arguments]: Import (guix build pyproject-build-system).
2022-12-02gnu: python-htsget: Update to 0.2.6.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-htsget): Update to 0.2.6. [build-system]: Use pyproject-build-system.
2022-12-02gnu: python-cellbender: Update to 0.2.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-cellbender): Update to 0.2.2. [build-system]: Use pyproject-build-system.
2022-11-27gnu: Add bgpq3.Felix Lechner
* gnu/packages/networking.scm (bgpq3): New variable. Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2022-12-02gnu: rust-zerocopy: Add 0.6.1.Marius Bakke
* gnu/packages/crates-io.scm (rust-zerocopy-0.6): New variable. (rust-zerocopy-0.3): Inherit from it.
2022-12-02gnu: rust-zerocopy-derive: Add 0.3.2.Marius Bakke
* gnu/packages/crates-io.scm (rust-zerocopy-derive-0.3): New variable. (rust-zerocopy-derive-0.2): Inherit from it.
2022-12-02gnu: Add rust-sha1-smol.Marius Bakke
* gnu/packages/crates-io.scm (rust-sha1-smol-1): New variable.
2022-12-02gnu: rust-md-5: Add 0.10.5.Marius Bakke
* gnu/packages/crates-io.scm (rust-md-5-0.10): New variable. (rust-md-5-0.9): Inherit from it.
2022-12-02gnu: rust-md5-asm: Update to 0.5.0.Marius Bakke
* gnu/packages/crates-io.scm (rust-md5-asm-0.5): New variable. (rust-md5-asm-0.4): Inherit from it.
2022-12-02gnu: Add rust-atomic.Marius Bakke
* gnu/packages/crates-io.scm (rust-atomic-0.5): New variable.
2022-12-02gnu: rust-memoffset: Add 0.7.1.Marius Bakke
* gnu/packages/crates-io.scm (rust-memoffset-0.7): New variable. (rust-memoffset-0.6): Inherit from it.
2022-12-02gnu: rust-gl: Add 0.14.Marius Bakke
* gnu/packages/crates-graphics.scm (rust-gl-0.14): New variable. (rust-gl-0.11): Inherit.
2022-12-02gnu: ungoogled-chromium: Use git tag in ungoogled origin.Marius Bakke
* gnu/packages/chromium.scm (%ungoogled-origin)[uri]: Use %UNGOOGLED-REVISION instead of commit identifier.
2022-12-02gnu: kicad: Remove obsolete phases.Marius Bakke
* gnu/packages/engineering.scm (kicad)[arguments]: Remove two phases.
2022-12-02gnu: golly: Update to 4.2.Marius Bakke
* gnu/packages/games.scm (golly): Update to 4.2. [arguments]: Remove configure phase. [inputs]: Remove PYTHON-2 and WXWIDGETS-GTK2. Add PYTHON, SDL2, and WXWIDGETS. Remove labels while at it.
2022-12-02gnu: python-wxpython: Update to 4.2.0.Marius Bakke
* gnu/packages/wxwidgets.scm (python-wxpython): Update to 4.2.0. [propagated-inputs]: Add PYTHON-ATTRDICT.
2022-12-02gnu: wxWidgets: Update to 3.2.1.Marius Bakke
* gnu/packages/wxwidgets.scm (wxwidgets): Update to 3.2.1. [source](modules, snippet): New fields. [inputs]: Remove SDL. Add CATCH-FRAMEWORK, EXPAT, GSTREAMER, GST-PLUGINS-BASE, LIBNOTIFY, LIBPNG, LIBSECRET, PCRE, SDL2, WEBKITGTK-WITH-LIBSOUP2, and ZLIB [arguments]: Add "--enable-mediactrl" and "--enable-gui" to #:configure-flags. Remove aarch64 workaround. Install catch header in refer-to-inputs phase. Add phase to adjust WebKitGTK version. (wxwidgets-3.1, wxwidgets-gtk2-3.1): Remove variables. (wxwidgets-3.0, (wxwidgets-gtk2-3.0): New variables. (wxsvg)[inputs]: Change from WXWIDGETS-3.1 to WXWIDGETS. * gnu/packages/audio.scm (audacity)[inputs]: Likewise. * gnu/packages/cdrom.scm (dvdstyler)[inputs]: Likewise. * gnu/packages/astronomy.scm (imppg)[inputs]: Change from WXWIDGETS to WXWIDGETS-3.0. * gnu/packages/ftp.scm (filezilla)[inputs]: Likewise. * gnu/packages/games.scm (megaglest)[inputs]: Likewise. * gnu/packages/geo.scm (opencpn)[inputs]: Likewise. * gnu/packages/music.scm (sooperlooper)[inputs]: Likewise. * gnu/packages/engineering.scm (kicad)[arguments]: Enable EGL support.
2022-12-02gnu: wxWidgets: Remove input labels.Marius Bakke
* gnu/packages/wxwidgets.scm (wxwidgets)[inputs]: Remove labels. [arguments]: Use SEARCH-INPUT-FILE. (wxwidgets-gtk2)[inputs]: Use MODIFY-INPUTS.
2022-12-02gnu: jucipp: Update to 1.7.2.Marius Bakke
* gnu/packages/text-editors.scm (jucipp): Update to 1.7.2. [arguments]: Skip one more test.
2022-12-02gnu: universal-ctags: Update to 5.9.20221127.0.Marius Bakke
* gnu/packages/code.scm (universal-ctags): Update to 5.9.20221127.0.
2022-12-02gnu: Add python-fanc.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-fanc): New variable. Co-authored-by: Navid Afkhami <navid.afkhami@mdc-berlin.de>
2022-12-02gnu: Add python-genomic-regions.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-genomic-regions): New variable. Co-authored-by: Navid Afkhami <navid.afkhami@mdc-berlin.de>
2022-12-02gnu: python-msgpack-numpy: Update to 0.4.8.Navid Afkhami
* gnu/packages/python-science.scm (python-msgpack-numpy): Update to 0.4.8.
2022-12-02gnu: Add python-pybloom-live.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-pybloom-live): New variable.
2022-12-02gnu: python-xxhash: Update to 3.1.0.Ricardo Wurmus
* gnu/packages/digest.scm (python-xxhash): Update to 3.1.0. [build-system]: Use pyproject-build-system. [native-inputs]: Add python-setuptools-scm.
2022-12-01Revert "gnu: linux-libre: Move info manual to doc output."Maxim Cournoyer
This reverts commit 748ec628826cea3faa3679074d87fae9bc810080. It broke the linux-libre-module-builder like so: builder for `/gnu/store/293jxydym9z7ck7afmrjqhiw3xpfs4i1-linux-libre-module-builder-6.0.10.drv' failed to produce output path `/gnu/store/ghmp1q5w6r1s9364rz53jd42152wgz2v-linux-libre-module-builder-6.0.10-doc' for reasons difficult to understand.
2022-12-02gnu: ungoogled-chromium: Update to 108.0.5359.71-1.Marius Bakke
* gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for M108. (%chromium-version): Set to 108.0.5359.71-1. (%arch-revision): Bump to newer commit. (%ungoogled-origin): Update hash. (%gcc-patches): Remove. (%reverse-patches): Remove one patch. (%arch-patches): New variable. (%patches): New variable. (ungoogled-chromium-snippet): Apply %PATCHES instead of individual variables. (ungoogled-chromium)[source]: Update hash. [arguments]: Adjust configure flag. [inputs]: Change from HARFBUZZ-3 to HARFBUZZ-5.
2022-12-02gnu: ungoogled-chromium: Generalize OpenJPEG substitution.Marius Bakke
* gnu/packages/chromium.scm (ungoogled-chromium)[arguments]: Don't hard code openjpeg version.
2022-12-02gnu: harfbuzz: Add 5.3.1.Marius Bakke
* gnu/packages/gtk.scm (harfbuzz-5): New variable.
2022-12-02gnu: balsa: Update to 2.6.4.Marius Bakke
* gnu/packages/mail.scm (balsa): Update to 2.6.4.
2022-12-02gnu: balsa: Add release-monitoring-url.Marius Bakke
* gnu/packages/mail.scm (balsa)[properties]: New field.
2022-12-02gnu: svt-av1: Update to 1.3.0.Marius Bakke
* gnu/packages/video.scm (svt-av1): Update to 1.3.0. [supported-systems]: Remove. [description]: Update.
2022-12-02gnu: QtWebEngine: Simplify code to remove third-party files.Marius Bakke
* gnu/packages/qt.scm (remove-third-party-files): Simplify some procedures.
2022-12-02gnu: qtwebengine@6: Fix third-party code removal snippet.Marius Bakke
* gnu/packages/qt.scm (qtwebengine-5)[source](snippet): Move code to delete third-party files out to ... (remove-third-party-files): ... this new variable. (qtwebengine)[source](snippet): Use that variable instead of the broken duplicate implementation. Adjust PRESERVED-THIRD-PARTY-FILES accordingly. [native-inputs]: Add PYTHON-BEAUTIFULSOUP4.
2022-12-02gnu: gn: Use G-expression.Marius Bakke
* gnu/packages/build-tools.scm (gn)[arguments]: Convert to G-expression.
2022-12-02gnu: gn: Remove input labels.Marius Bakke
* gnu/packages/build-tools.scm (gn)[native-inputs]: Remove labels.
2022-12-02gnu: gn: Update to 0.0-2072.1c4151f.Marius Bakke
* gnu/packages/build-tools.scm (gn): Update to 0.0-2072.1c4151f. [arguments]: Adjust create-last-commit-position phase to be identical with upstream code.
2022-12-02gnu: balsa: Fix build.Marius Bakke
* gnu/packages/mail.scm (balsa)[arguments]: Add #:phase to build with newer WebKitGTK. [inputs]: Change from GTKSOURCEVIEW to GTKSOURCEVIEW-4.
2022-12-02services: networking: Avoid 'match' on records.Ludovic Courtès
* gnu/services/networking.scm (dhcp-client-shepherd-service): Use accessors instead of 'match'. (inetd-shepherd-service): Likewise. (tor-shepherd-service): Likewise. (network-manager-service-type): Likewise. (modem-manager-service-type): Likewise. (wpa-supplicant-service-type): Likewise. (openvswitch-activation): Likewise. (openvswitch-shepherd-service): Likewise. (dhcpd-shepherd-service): Use 'match-record' instead of 'match'. (dhcpd-activation): Likewise. (ntp-server->string): Likewise. (ntp-shepherd-service): Likewise. (tor-configuration->torrc): Likewise. (network-manager-activation): Likewise. (network-manager-environment): Likewise. (network-manager-shepherd-service): Likewise. (usb-modeswitch-configuration->udev-rules): Likewise. (wpa-supplicant-shepherd-service): Likewise. (iptables-shepherd-service): Likewise. (nftables-shepherd-service): Likewise. (keepalived-shepherd-service): Likewise.
2022-12-02services: base: Use 'match-record' instead of 'match'.Ludovic Courtès
* gnu/services/base.scm (agetty-shepherd-service) (mingetty-shepherd-service) (nscd.conf-file) (udev-shepherd-service) (udev-etc) (gpm-shepherd-service) (network-set-up/linux) (network-tear-down/linux) (static-networking-shepherd-service) (greetd-agreety-tty-session-command) (greetd-agreety-tty-xdg-session-command): Use 'match-record' instead of 'match'. (guix-accounts): Use <guix-configuration> accessors. (udev-service-type): Use <udev-configuration> accessors.
2022-12-02home: services: Use 'match-record' instead of 'match'.Ludovic Courtès
* gnu/home/services/mcron.scm (home-mcron-shepherd-services): Use 'match-record' instead of 'match'. * gnu/home/services/shells.scm (home-bash-extensions): Likewise. * gnu/home/services/xdg.scm (serialize-xdg-desktop-entry): Likewise.
2022-12-02doc: Recommend 'match-record'.Ludovic Courtès
* doc/contributing.texi (Data Types and Pattern Matching): Recommend 'match-record'.
2022-12-02records: 'match-record' checks fields at macro-expansion time.Ludovic Courtès
This allows 'match-record' to be more efficient (field offsets are computed at compilation time) and to report unknown fields at macro-expansion time. * guix/records.scm (map-fields): New macro. (define-record-type*)[rtd-identifier]: New procedure. Define TYPE as a macro and use a separate identifier for the RTD. (lookup-field, match-record-inner): New macros. (match-record): Rewrite in terms of 'match-error-inner'. * tests/records.scm ("match-record, simple") ("match-record, unknown field"): New tests. * gnu/services/cuirass.scm (cuirass-shepherd-service): Rename 'log-file' local variable to 'main-log-file'. * gnu/services/getmail.scm (serialize-getmail-configuration-file): Move after <getmail-configuration-file> definition.
2022-12-02gnu: Add alfa.Sharlatan Hellseher
* gnu/packages/astronomy.scm (alfa): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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