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2022-05-28gnu: r-vegan: Update to 2.6-2.Ricardo Wurmus
* gnu/packages/cran.scm (r-vegan): Update to 2.6-2.
2022-05-28gnu: r-astsa: Update to 1.15.Ricardo Wurmus
* gnu/packages/cran.scm (r-astsa): Update to 1.15.
2022-05-28gnu: r-shadowtext: Update to 0.1.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-shadowtext): Update to 0.1.2.
2022-05-28gnu: r-mboost: Update to 2.9-7.Ricardo Wurmus
* gnu/packages/cran.scm (r-mboost): Update to 2.9-7.
2022-05-28gnu: r-polychrome: Update to 1.5.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-polychrome): Update to 1.5.1.
2022-05-28gnu: r-scales: Update to 1.2.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-scales): Update to 1.2.0. [propagated-inputs]: Add r-rlang.
2022-05-28gnu: r-zoo: Update to 1.8-10.Ricardo Wurmus
* gnu/packages/cran.scm (r-zoo): Update to 1.8-10.
2022-05-28gnu: r-v8: Update to 4.2.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-v8): Update to 4.2.0.
2022-05-28gnu: r-datawizard: Update to 0.4.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-datawizard): Update to 0.4.1.
2022-05-28gnu: r-abn: Update to 2.7-1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-abn): Update to 2.7-1.
2022-05-28gnu: r-ldheatmap: Update to 1.0-6.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ldheatmap): Update to 1.0-6.
2022-05-28gnu: r-wgcna: Update to 1.71.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-wgcna): Update to 1.71.
2022-05-28gnu: r-activepathways: Update to 1.1.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-activepathways): Update to 1.1.0.
2022-05-28gnu: r-with-tests: Update to 4.2.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-with-tests): Update to 4.2.0. [arguments]: Add phase 'patch-tests; add phase 'set-home.
2022-05-28gnu: wget2: Reindent package.Efraim Flashner
* gnu/packages/wget.scm (wget2): Reindent package with 'guix style'.
2022-05-28gnu: wget2: Update to 2.0.1.Efraim Flashner
* gnu/packages/wget.scm (wget2): Update to 2.0.1. [arguments]: Remove trailing #t from phases.
2022-05-28gnu: mesa: Build with llvm on armhf-linux.Efraim Flashner
* gnu/packages/gl.scm (mesa)[inputs]: Add llvm for all architectures. [native-inputs]: Add glslang for all architectures. [arguments]: Adjust configure-flags to give armhf-linux its own gallium-drivers and enable llvm support. Rewrite portions that no longer depend on specific architectures to enable flags. Adjust custom 'disable-failing-test phase to skip a test on armhf-linux.
2022-05-28gnu: clang-from-llvm: Fix build on some architectures.Efraim Flashner
* gnu/packages/llvm.scm (clang-from-llvm)[arguments]: Adjust custom 'symlink-cfi_ignorelist phase to only symlink when the file exists.
2022-05-28gnu: quodlibet: Fix inputs.Liliana Marie Prikler
* gnu/packages/music.scm (quodlibet)[inputs]: Add bash-minimal for ‘wrap-program’. Remove extraneous gtk+.
2022-05-28gnu: Add quodlibet.Remco van 't Veer
* gnu/packages/music.scm (quodlibet): New variable. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-05-28gnu: emacs-magit: Use directory excursions rather than wild chdir.Liliana Marie Prikler
* gnu/packages/emacs-xyz.scm (emacs-magit)[#:phases] <build-info-manual, configure-git>: Don't chdir. <set-magit-version, patch-exec-paths>: Use full file names. <enter-lisp-directory>: Drop phase. <expand-load-path, install>: Wrap in directory excursions.
2022-05-28gnu: emacs-magit: Drop the libgit backend.Zhu Zihao
The libgit backend currently provides next to no features, but demands extra maintenance overhead. It is in fact not a usable backend; thus let's not use it. * gnu/packages/emacs-xyz.scm (emacs-magit)[arguments] <#:emacs>: Drop argument. <#:exclude>: Add sources related to emacs-libgit. [inputs]: Remove emacs-libgit. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-05-28gnu: emacs-magit: Use G-expressions.Zhu Zihao
* gnu/packages/emacs-xyz.scm (emacs-magit)[arguments]: Use G-expressions. <#:phases>: Use search-input-file to find perl for ‘patch-exec-paths’. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-05-27gnu: diffoscope: Update to 214.Vagrant Cascadian
* gnu/packages/diffoscope.scm (diffoscope): Update to 214. [arguments]: Remove 'xb-tool-external-tool phase.
2022-05-28gnu: Add python-gatt.Wamm K. D
* gnu/packages/python-xyz.scm (python-gatt): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-27substitute: Check for --help or --version options early.yarl-baudig@mailoo.org
Running `guix archive --authorize` sets /etc/guix/acl to 600 via with-atomic-file-output via mkstemp!. Then running `guix substitute --help/--version` fails on "permission denied". While "guix substitute" is an internal tool, the options --help and --version exist and you should be able to run those from the command line. * guix/scripts/substitute.scm (guix-substitute): Earlier check for --help or --version. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-27gnu: Add python-srt.Pradana AUMARS
* gnu/packages/python-xyz (python-srt): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-27gnu: Add python-wasabi.Artyom V. Poptsov
* gnu/packages/python-xyz.scm (python-wasabi): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-27gnu: emacs-evil-org: Update to 0d10ff7.jgart
* gnu/packages/emacs-xyz.scm (emacs-evil-org): Update to 0d10ff7. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-27gnu: emacs-detached: Update to 0.7.Niklas Eklund
* gnu/packages/emacs-xyz.scm (emacs-detached): Update to 0.7. (emacs-dtache): Define as a deprecated alias. I have both renamed the package dtache -> detached as well as moving the development from gitlab to sourcehut. This patch reflects those changes, as well as updating to the latest release of the package. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-27gnu: Add python-catalogue.Artyom V. Poptsov
* gnu/packages/python-xyz.scm (python-catalogue): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-27gnu: yad: Update to 12.0.Benjamin Slade
* gnu/packages/gtk.scm (yad): Update to 12.0. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-27gnu: python-peachpy: Update to 913d74c.Ludovic Courtès
Fixes <https://issues.guix.gnu.org/55669>. Reported by Sebastian Gibb <mail@sebastiangibb.de>. * gnu/packages/python-xyz.scm (python-peachpy): Update to 913d74c.
2022-05-27gnu: linux-libre 4.9: Update to 4.9.316.Leo Famulari
* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.316. (linux-libre-4.9-pristine-source): Update hash.
2022-05-27gnu: linux-libre 4.14: Update to 4.14.281.Leo Famulari
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.281. (linux-libre-4.14-pristine-source): Update hash.
2022-05-27gnu: linux-libre 4.19: Update to 4.19.245.Leo Famulari
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.245. (linux-libre-4.19-pristine-source): Update hash.
2022-05-27gnu: linux-libre 5.4: Update to 5.4.196.Leo Famulari
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.196. (linux-libre-5.4-pristine-source): Update hash.
2022-05-27gnu: linux-libre 5.10: Update to 5.10.118.Leo Famulari
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.118. (linux-libre-5.10-pristine-source): Update hash.
2022-05-27gnu: linux-libre 5.15: Update to 5.15.43.Leo Famulari
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.43. (linux-libre-5.15-pristine-source): Update hash.
2022-05-27gnu: linux-libre: Update to 5.17.11.Leo Famulari
* gnu/packages/linux.scm (linux-libre-5.17-version): Update to 5.17.11. (linux-libre-5.17-pristine-source): Update hash.
2022-05-27gnu: nginx-rtmp-module: Use gexps in phases.Jack Hill
* gnu/packages/web.scm (nginx-rtmp-module)[#:phases]: Use gexps and remove trailing #t. Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-05-27gnu: nginx-rtmp-module: Use #:configure-flags from nginx.Jack Hill
* gnu/packages/web.scm (nginx-rtmp-module)[arguments]: Simplify copying of arguments from nginx and augment #:configure-flags from nginx rather than overwriting. Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-05-27gnu: python-protobuf-3.6: Add missing input.Christopher Baines
This was removed from python-protobuf in 5f8491ea95d7ba88801aa28b6d2b98f30b033186. * gnu/packages/protobuf.scm (python-protobuf-3.6)[inputs]: Add python-six.
2022-05-22gnu: obs-websocket: Update to 4.9.1.Tobias Geerinckx-Rice
* gnu/packages/video.scm (obs-websocket): Update to 4.9.1. [arguments]: Update CMakeLists.txt permissions substitution. Don't explicitly return #t from phases.
2022-05-22gnu: jo: Update to 1.6.Tobias Geerinckx-Rice
* gnu/packages/web.scm (jo): Update to 1.6.
2022-05-27gnu: emacs-deferred: Fix wrong number of arguments.Liliana Marie Prikler
* gnu/packages/patches/emacs-deferred-fix-number-of-arguments.patch: New file. * gnu/packages/emacs-xyz.scm (emacs-deferred)[patches]: Use it here. * gnu/local.mk (dist_patch_DATA): Add it here.
2022-05-22gnu: java-jdom: Update to 2.0.6.1 [fixes CVE-2021-33813].Tobias Geerinckx-Rice
* gnu/packages/xml.scm (java-jdom): Update to 2.0.6.1.
2022-05-22gnu: jumpapp: Update to 1.2.Tobias Geerinckx-Rice
* gnu/packages/xdisorg.scm (jumpapp): Update to 1.2. [arguments]: Don't explicitly return #t from phases.
2022-05-22gnu: lxc: Update to 4.0.12.Tobias Geerinckx-Rice
* gnu/packages/virtualization.scm (lxc): Update to 4.0.12.
2022-05-22gnu: libcbor: Mark up description.Tobias Geerinckx-Rice
* gnu/packages/compression.scm (libcbor)[description]: Use @acronym{}.
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