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* gnu/packages/databases.scm (python2-py2neo): Delete variable.
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* gnu/packages/databases.scm (python2-apsw): Delete variable.
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* gnu/packages/databases.scm (python2-ccm): Delete variable.
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* gnu/packages/databases.scm (python2-peewee): Delete variable.
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* gnu/packages/databases.scm (python2-trollius-redis): Delete variable.
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* gnu/packages/databases.scm (python2-redis): Delete variable.
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* gnu/packages/databases.scm (python2-neo4j-driver): Delete variable.
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* gnu/packages/chemistry.scm (nmoldyn): Delete variable.
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* gnu/packages/chemistry.scm (domainfinder): Delete variable.
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* gnu/packages/check.scm (python2-nose-randomly): Delete variable.
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* gnu/packages/check.scm (python2-pytest-subtesthack): Delete variable.
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* gnu/packages/check.scm (python2-pytest-flakes): Delete variable.
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* gnu/packages/check.scm (python2-cov-core): Delete variable.
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* gnu/packages/check.scm (python2-discover): Delete variable.
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* gnu/packages/check.scm (python2-flexmock): Delete variable.
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* gnu/packages/check.scm (python2-minimock): Delete variable.
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* gnu/packages/check.scm (python2-rednose): Delete variable.
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* gnu/packages/check.scm (python2-python-paramunittest): Delete variable.
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* gnu/packages/check.scm (python2-pytest-capturelog): Delete variable.
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* gnu/packages/check.scm (python2-nose2): Delete variable.
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* gnu/packages/check.scm (python2-testlib): Delete variable.
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* gnu/packages/check.scm (python2-pytest-catchlog): Delete variable.
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* gnu/packages/check.scm (python2-nose-timer): Delete variable.
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* gnu/packages/bittorrent.scm (transmission-remote-cli): Delete variable.
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* gnu/packages/bioinformatics.scm (pyicoteo): Delete variable.
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* gnu/packages/bioinformatics.scm (python2-pbcore): Delete variable.
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* gnu/packages/bioinformatics.scm (python2-pyfaidx): Delete variable.
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* gnu/packages/bioinformatics.scm (python2-screed): Delete variable.
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* gnu/packages/bioinformatics.scm (miso): Delete variable.
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* gnu/packages/bioinformatics.scm (python2-warpedlmm): Delete variable.
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* gnu/packages/bioinformatics.scm (poretools): Delete variable.
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* gnu/packages/bioinformatics.scm (python2-dendropy): Delete variable.
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* gnu/packages/bioinformatics.scm (bamm): Delete variable.
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* gnu/packages/bioinformatics.scm (python2-pybedtools): Delete variable.
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* gnu/packages/bioinformatics.scm (python2-htseq): Delete variable.
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* gnu/packages/bioinformatics.scm (pepr): Delete variable.
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* gnu/packages/bioinformatics.scm (tetoolkit): Update to 2.2.1b.
[python]: Delete argument.
[phases]: Delete trailing #t.
{make-writable}: Delete phase.
{adjust-requirements}: New phase.
{patch-invocations}: Use search-input-file.
{wrap-program}: Use search-input-file.
[inputs]: Remove python2-argparse. Replace python2-pysam with python-pysam.
[home-page]: Update URL.
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* gnu/packages/bioinformatics.scm (python2-pybigwig): Delete variable.
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* gnu/packages/bioinformatics.scm (ribodiff): Delete variable.
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* gnu/packages/bioinformatics.scm (grit): Delete variable.
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* gnu/packages/bioinformatics.scm (python2-fastalite): Delete variable.
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* gnu/packages/audio.scm (python2-pyaudio): Delete variable.
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* gnu/packages/audio.scm (raul-devel): Delete variable.
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* gnu/packages/audio.scm (raul): Delete variable.
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* gnu/packages/music.scm (ingen): Delete variable.
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* gnu/packages/audio.scm (python2-pyalsaaudio): Delete variable.
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* gnu/packages/admin.scm (graphios): Delete variable.
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* gnu/packages/ada.scm (python2-langkit): Delete variable.
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* gnu/packages/check.scm (python-pytest-runner-2): Delete variable.
(python2-pytest-runner): Likewise.
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* guix/diagnostics.scm (source-properties->location): The location column is
0-indexed, not 1-indexed (the same as in source-properties, so the code is
accurate).
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