| Age | Commit message (Expand) | Author |
|---|
| 2020-12-09 | gnu: Add libzim....* gnu/packages/web.scm (libzim): New variable.
| Pierre Neidhardt |
| 2020-12-09 | gnu: Add emacs-helm-switch-to-repl....* gnu/packages/emacs-xyz.scm (emacs-helm-switch-to-repl): New variable.
| Pierre Neidhardt |
| 2020-12-09 | gnu: emacs-debbugs: Update to 0.27....* gnu/packages/emacs-xyz.scm (emacs-debbugs): Update to 0.27.
| Nicolas Goaziou |
| 2020-12-09 | gnu: pciutils: Fix compilation error on GNU/Hurd....* gnu/packages/patches/pciutils-hurd-fix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/pciutils.scm (pciutils)[arguments]: Add
'apply-hurd-patch' phase when (hurd-target?) is true.
[inputs]: Add "hurd-patch" entry when (hurd-target?) is true.
| Ludovic Courtès |
| 2020-12-09 | doc: Document 'advertise?' for 'guix-publish-configuration'....* doc/guix.texi (Base Services): Document the 'advertise?' field of
'guix-publish-configuration'.
| Ludovic Courtès |
| 2020-12-09 | services: guix-publish: Depend on 'avahi-daemon' when needed....* gnu/services/base.scm (guix-publish-shepherd-service): Add
'user-processes' to 'requirement'. When ADVERTISE? is true, also add
'avahi-daemon'.
| Ludovic Courtès |
| 2020-12-09 | services: avahi: Depend on 'user-processes'....* gnu/services/avahi.scm (avahi-shepherd-service): Add 'user-processes'
to 'requirement'.
| Ludovic Courtès |
| 2020-12-09 | gnu: r-diffbind: Update to 3.0.8....* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.0.8.
| Ricardo Wurmus |
| 2020-12-09 | gnu: r-rhtslib: Propagate zlib....* gnu/packages/bioinformatics.scm (r-rhtslib)[inputs]: Move zlib from here...
[propagated-inputs]: ...to here.
(r-variantannotation, r-rsamtools, r-bamsignals, r-rhdf5,
r-methylkit)[inputs]: Remove zlib.
* gnu/packages/bioconductor.scm (r-diffbind, r-quasr, r-cytolib, r-ncdfflow,
r-flowworkspace, r-seqbias)[inputs]: Remove zlib.
| Ricardo Wurmus |
| 2020-12-09 | gnu: r-delayedmatrixstats: Update to 1.12.1....* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.12.1.
[propagated-inputs]: Add r-matrixgenerics.
| Ricardo Wurmus |
| 2020-12-09 | gnu: r-gqtlstats: Update to 1.21.3....* gnu/packages/bioinformatics.scm (r-gqtlstats): Update to 1.21.3.
| zimoun |
| 2020-12-09 | gnu: r-gqtlbase: Update to 1.21.1....Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
* gnu/packages/bioinformatics.scm (r-gqtlbase): Update to 1.21.1.
[arguments]: Add phase to patch broken NAMESPACE file.
| zimoun |
| 2020-12-09 | gnu: r-bigmelon: Update to 1.16.0....* gnu/packages/bioconductor.scm (r-bigmelon): Update to 1.16.0.
| zimoun |
| 2020-12-09 | gnu: r-watermelon: Update to 1.34.0....* gnu/packages/bioconductor.scm (r-watermelon): Update to 1.34.0.
| zimoun |
| 2020-12-09 | gnu: r-yarn: Update to 1.16.0....* gnu/packages/bioconductor.scm (r-yarn): Update to 1.16.0.
| zimoun |
| 2020-12-09 | gnu: r-quantro: Update to 1.24.0....* gnu/packages/bioconductor.scm (r-quantro): Update to 1.24.0.
| zimoun |
| 2020-12-09 | gnu: r-lumi: Update to 2.42.0....* gnu/packages/bioconductor.scm (r-lumi): Update to 2.42.0.
| zimoun |
| 2020-12-09 | gnu: r-methylumi: Update to 2.36.0....* gnu/packages/bioconductor.scm (r-methylumi): Update to 2.36.0.
| zimoun |
| 2020-12-09 | gnu: r-minfi: Update to 1.36.0....* gnu/packages/bioconductor.scm (r-minfi): Update to 1.36.0.
| zimoun |
| 2020-12-09 | gnu: Add r-catalyst....* gnu/packages/bioconductor.scm (r-catalyst): New variable.
| zimoun |
| 2020-12-09 | gnu: r-ggcyto: Update to 1.18.0....* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.18.0.
| zimoun |
| 2020-12-09 | gnu: r-scdd: Update to 1.14.0....* gnu/packages/bioconductor.scm (r-scdd): Update to 1.14.0.
| zimoun |
| 2020-12-09 | gnu: r-chipcomp: Update to 1.20.0....* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.20.0.
| zimoun |
| 2020-12-09 | gnu: r-pcatools: Update to 2.2.0....* gnu/packages/bioconductor.scm (r-pcatools): Update to 2.2.0.
| zimoun |
| 2020-12-09 | gnu: r-biocviews: Update to 1.58.1....* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.58.1.
Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
| zimoun |
| 2020-12-09 | gnu: r-scran: Update to 1.18.0....* gnu/packages/bioconductor.scm (r-scran): Update to 1.18.0.
[propagated-inputs]: Add r-bluster, r-scuttle. Remove r-iranges.
Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
| zimoun |
| 2020-12-09 | gnu: r-scater: Update to 1.18.3....* gnu/packages/bioconductor.scm (r-scater): Update to 1.18.3.
[propagated-inputs]: Add r-gridextra, r-scutlle. Remove r-beachmat, r-rcpp.
Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
| zimoun |
| 2020-12-09 | gnu: Add r-scuttle....* gnu/packages/bioconductor.scm (r-scuttle): New variable.
| Ricardo Wurmus |
| 2020-12-09 | gnu: r-delayedmatrixstats: Update to 1.12.0....* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.12.0.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>.
| zimoun |
| 2020-12-09 | gnu: r-rhdf5: Update to 2.34.0....* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.34.0.
[propagated-inputs]: Add r-rhdf5filters.
[arguments]: Avoid to have a plain directory on the list of libraries to
link.
Co-authored-by: Ricardo Wurmus <reka@elephly.net>.
| zimoun |
| 2020-12-09 | gnu: Add r-rhdf5filters....* gnu/packages/bioinformatics.scm (r-rhdf5filters): New variable.
| Ricardo Wurmus |
| 2020-12-09 | gnu: r-singlecellexperiment: Update to 1.12.0....* gnu/packages/bioconductor.scm (r-singlecellexperiment): Update to 1.12.0.
| zimoun |
| 2020-12-09 | gnu: r-yapsa: Update to 1.16.0....* gnu/packages/bioconductor.scm (r-yapsa): Update to 1.16.0.
| zimoun |
| 2020-12-09 | gnu: r-biocsingular: Update to 1.6.0....* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.6.0.
| zimoun |
| 2020-12-09 | gnu: r-genomicinteractions: Update to 1.24.0....* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.24.0.
| zimoun |
| 2020-12-09 | gnu: r-interactionset: Update to 1.18.0....* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.18.0.
| zimoun |
| 2020-12-09 | gnu: r-genomationdata: Update to 1.22.0....* gnu/packages/bioinformatics.scm (r-genomationdata): Update to 1.22.0.
| zimoun |
| 2020-12-09 | gnu: Add r-sparsematrixstats....* gnu/packages/bioconductor.scm (r-sparsematrixstats): New variable.
| Ricardo Wurmus |
| 2020-12-09 | gnu: Add r-bluster....* gnu/packages/bioconductor.scm (r-bluster): New variable.
| Roel Janssen |
| 2020-12-09 | gnu: r-annaffy: Update to 1.62.0....* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.62.0.
| Roel Janssen |
| 2020-12-09 | gnu: r-sushi: Update to 1.28.0....* gnu/packages/bioinformatics.scm (r-sushi): Update to 1.28.0.
| zimoun |
| 2020-12-09 | gnu: r-gwascat: Update to 2.22.0....* gnu/packages/bioinformatics.scm (r-gwascat): Update to 2.22.0.
[propagated-inputs]: Add r-biocfilecache, r-readr, r-snpstats, and
r-variantannotation; remove r-biocgenerics, r-ggplot2, r-rsamtools, and
r-rtracklayer.
| zimoun |
| 2020-12-09 | gnu: r-gviz: Update to 1.34.0....* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.34.0.
| zimoun |
| 2020-12-09 | gnu: r-ldblock: Update to 1.20.0....* gnu/packages/bioinformatics.scm (r-ldblock): Update to 1.20.0.
| zimoun |
| 2020-12-09 | gnu: r-erma: Update to 1.6.0....* gnu/packages/bioinformatics.scm (r-erma): Update to 1.6.0.
| zimoun |
| 2020-12-09 | gnu: r-snpstats: Update to 1.40.0....* gnu/packages/bioinformatics.scm (r-snpstats): Update to 1.40.0.
| zimoun |
| 2020-12-09 | gnu: r-ggbio: Update to 1.38.0....* gnu/packages/bioinformatics.scm (r-ggbio): Update to 1.38.0.
| zimoun |
| 2020-12-09 | gnu: r-biovizbase: Update to 1.38.0....* gnu/packages/bioinformatics.scm (r-biovizbase): Update to 1.38.0.
| zimoun |
| 2020-12-09 | gnu: r-organismdbi: Update to 1.32.0....* gnu/packages/bioinformatics.scm (r-organismdbi): Update to 1.32.0.
| zimoun |
| 2020-12-09 | gnu: r-ensembldb: Update to 2.14.0....* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.14.0.
| zimoun |
