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2021-09-30packages: Factorize and document 'computed-origin-method'....The 'computed-origin-method' had been introduced to work around limitations of the 'snippet' mechanism. The procedure was duplicated, which made it hard to automatically detect packages using it. * guix/packages.scm (computed-origin-method): Move procedure from... * gnu/packages/gnuzilla.scm: ...here and... * gnu/packages/gnuzilla.scm: ...there. Signed-off-by: Ludovic Courtès <ludo@gnu.org> zimoun
2021-09-30gnu: komikku: Update to 0.34.0....* gnu/packages/gnome.scm (komikku): Update to 0.34.0. Liliana Marie Prikler
2021-09-30gnu: Add python-pytest-repeat....* gnu/packages/python-check.scm (python-pytest-repeat): New variable. Maxim Cournoyer
2021-09-30gnu: Add julia-documenter....These four variables are added in the same commit to avoid a cyclic dependency. * gnu/packages/julia-xyz.scm (julia-documenter, julia-documentermarkdown, julia-documentertools): New variables. (julia-documenter-bootstrap): New hidden variable. Efraim Flashner
2021-09-30gnu: Add julia-sass....* gnu/packages/julia-xyz.scm (julia-sass): New variable. Efraim Flashner
2021-09-30gnu: Add julia-libsass-jll....* gnu/packages/julia-jll.scm (julia-libsass-jll): New variable. Efraim Flashner
2021-09-30gnu: Add julia-ansicoloredprinters....* gnu/packages/julia-xyz.scm (julia-ansicoloredprinters): New variable. Efraim Flashner
2021-09-30gnu: Add julia-pycall....* gnu/packages/julia-xyz.scm (julia-pycall): New variable. Efraim Flashner
2021-09-30gnu: Add julia-mlstyle....* gnu/packages/julia-xyz.scm (julia-mlstyle): New variable. Efraim Flashner
2021-09-30gnu: Add julia-measurements....* gnu/packages/julia-xyz.scm (julia-measurements): New variable. Efraim Flashner
2021-09-30gnu: Add julia-quadgk....* gnu/packages/julia-xyz.scm (julia-quadgk): New variable. Efraim Flashner
2021-09-30gnu: r-gdsfmt: Adjust bad substitution....* gnu/packages/bioconductor.scm (r-gdsfmt)[source]: Include beginning-of-line anchor in substitution regular expression. Ricardo Wurmus
2021-09-30gnu: r-delayedmatrixstats: Update to 1.14.3....* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.14.3. Ricardo Wurmus
2021-09-30gnu: r-s4vectors: Update to 0.30.1....* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.30.1. Ricardo Wurmus
2021-09-30gnu: r-biocpkgtools: Update to 1.10.2....* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.10.2. [propagated-inputs]: Remove r-rex. Ricardo Wurmus
2021-09-30gnu: r-timeseriesexperiment: Update to 1.10.1....* gnu/packages/bioconductor.scm (r-timeseriesexperiment): Update to 1.10.1. Ricardo Wurmus
2021-09-30gnu: r-gdsfmt: Update to 1.28.1....* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.28.1. Ricardo Wurmus
2021-09-30gnu: r-cicero: Update to 1.10.1....* gnu/packages/bioconductor.scm (r-cicero): Update to 1.10.1. Ricardo Wurmus
2021-09-30gnu: r-zinbwave: Update to 1.14.2....* gnu/packages/bioconductor.scm (r-zinbwave): Update to 1.14.2. Ricardo Wurmus
2021-09-30gnu: r-clusterprofiler: Update to 4.0.5....* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.0.5. [propagated-inputs]: Remove r-rvcheck; add r-yulab-utils. Ricardo Wurmus
2021-09-30gnu: r-ggtree: Update to 3.0.4....* gnu/packages/bioconductor.scm (r-ggtree): Update to 3.0.4. [propagated-inputs]: Remove r-rvcheck; add r-ggfun and r-yulab-utils. Ricardo Wurmus
2021-09-30gnu: r-matrixgenerics: Update to 1.4.3....* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.4.3. Ricardo Wurmus
2021-09-30gnu: r-chippeakanno: Update to 3.26.4....* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.26.4. Ricardo Wurmus
2021-09-30gnu: r-diffbind: Update to 3.2.7....* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.2.7. Ricardo Wurmus
2021-09-30gnu: r-genomicfeatures: Update to 1.44.2....* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.44.2. Ricardo Wurmus
2021-09-30gnu: r-genomeinfodb: Update to 1.28.4....* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.28.4. Ricardo Wurmus
2021-09-30gnu: r-edger: Update to 3.34.1....* gnu/packages/bioconductor.scm (r-edger): Update to 3.34.1. Ricardo Wurmus
2021-09-30gnu: r-biocparallel: Update to 1.26.2....* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.26.2. Ricardo Wurmus
2021-09-30gnu: r-affxparser: Update to 1.64.1....* gnu/packages/bioconductor.scm (r-affxparser): Update to 1.64.1. Ricardo Wurmus
2021-09-30gnu: r-r-filesets: Fix build by setting HOME....* gnu/packages/cran.scm (r-r-filesets)[arguments]: Add build phase to set HOME variable. Ricardo Wurmus
2021-09-30gnu: r-glinternet: Update to 1.0.12....* gnu/packages/statistics.scm (r-glinternet): Update to 1.0.12. Ricardo Wurmus
2021-09-30gnu: r-pbapply: Update to 1.5-0....* gnu/packages/statistics.scm (r-pbapply): Update to 1.5-0. Ricardo Wurmus
2021-09-30gnu: r-rrcov: Update to 1.6-0....* gnu/packages/statistics.scm (r-rrcov): Update to 1.6-0. Ricardo Wurmus
2021-09-30gnu: r-fastica: Update to 1.2-3....* gnu/packages/statistics.scm (r-fastica): Update to 1.2-3. Ricardo Wurmus
2021-09-30gnu: r-sfsmisc: Update to 1.1-12....* gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-12. Ricardo Wurmus
2021-09-30gnu: r-matrixstats: Update to 0.61.0....* gnu/packages/statistics.scm (r-matrixstats): Update to 0.61.0. Ricardo Wurmus
2021-09-30gnu: r-r-utils: Update to 2.11.0....* gnu/packages/statistics.scm (r-r-utils): Update to 2.11.0. Ricardo Wurmus
2021-09-30gnu: r-e1071: Update to 1.7-9....* gnu/packages/statistics.scm (r-e1071): Update to 1.7-9. Ricardo Wurmus
2021-09-30gnu: r-rngtools: Update to 1.5.2....* gnu/packages/statistics.scm (r-rngtools): Update to 1.5.2. Ricardo Wurmus
2021-09-30gnu: r-xml: Update to 3.99-0.8....* gnu/packages/statistics.scm (r-xml): Update to 3.99-0.8. Ricardo Wurmus
2021-09-30gnu: r-rmarkdown: Update to 2.11....* gnu/packages/statistics.scm (r-rmarkdown): Update to 2.11. [propagated-inputs]: Add r-jquerylib. Ricardo Wurmus
2021-09-30gnu: r-plotrix: Update to 3.8-2....* gnu/packages/statistics.scm (r-plotrix): Update to 3.8-2. Ricardo Wurmus
2021-09-30gnu: r-hms: Update to 1.1.1....* gnu/packages/statistics.scm (r-hms): Update to 1.1.1. Ricardo Wurmus
2021-09-30gnu: r-openssl: Update to 1.4.5....* gnu/packages/statistics.scm (r-openssl): Update to 1.4.5. Ricardo Wurmus
2021-09-30gnu: r-roxygen2: Update to 7.1.2....* gnu/packages/statistics.scm (r-roxygen2): Update to 7.1.2. [propagated-inputs]: Remove r-rcpp; add r-cpp11. Ricardo Wurmus
2021-09-30gnu: r-ade4: Update to 1.7-18....* gnu/packages/statistics.scm (r-ade4): Update to 1.7-18. Ricardo Wurmus
2021-09-30gnu: r-tibble: Update to 3.1.4....* gnu/packages/statistics.scm (r-tibble): Update to 3.1.4. Ricardo Wurmus
2021-09-30gnu: r-knitr: Update to 1.34....* gnu/packages/statistics.scm (r-knitr): Update to 1.34. [propagated-inputs]: Remove r-markdown. Ricardo Wurmus
2021-09-30gnu: r-stringi: Update to 1.7.4....* gnu/packages/statistics.scm (r-stringi): Update to 1.7.4. Ricardo Wurmus
2021-09-30gnu: r-digest: Update to 0.6.28....* gnu/packages/statistics.scm (r-digest): Update to 0.6.28. Ricardo Wurmus
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