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2023-07-12gnu: r-ggtern: Update to 3.4.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggtern): Update to 3.4.2.
2023-07-12gnu: r-fastdummies: Update to 1.7.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-fastdummies): Update to 1.7.3.
2023-07-12gnu: r-curl: Update to 5.0.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-curl): Update to 5.0.1.
2023-07-12gnu: r-jsonlite: Update to 1.8.7.Ricardo Wurmus
* gnu/packages/cran.scm (r-jsonlite): Update to 1.8.7. [native-inputs]: Add r-r-rsp.
2023-07-12gnu: r-readxl: Update to 1.4.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-readxl): Update to 1.4.3.
2023-07-12gnu: r-ecp: Update to 3.1.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-ecp): Update to 3.1.5.
2023-07-12gnu: r-ggpmisc: Update to 0.5.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggpmisc): Update to 0.5.3.
2023-07-12gnu: r-googlesheets4: Update to 1.1.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-googlesheets4): Update to 1.1.1.
2023-07-12gnu: r-googledrive: Update to 2.1.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-googledrive): Update to 2.1.1.
2023-07-12gnu: r-datawizard: Update to 0.8.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-datawizard): Update to 0.8.0.
2023-07-12gnu: r-ggpicrust2: Update to 1.7.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ggpicrust2): Update to 1.7.1. [propagated-inputs]: Remove r-phyloseq; add r-ggh4x.
2023-07-12gnu: r-scistreer: Update to 1.2.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-scistreer): Update to 1.2.0.
2023-07-12gnu: r-numbat: Update to 1.3.2-1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-numbat): Update to 1.3.2-1.
2023-07-12gnu: r-biomartr: Update to 1.0.4.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biomartr): Update to 1.0.4.
2023-07-12gnu: apache-arrow: Update to 12.0.1.Ricardo Wurmus
* gnu/packages/databases.scm (apache-arrow): Update to 12.0.1.
2023-07-12gnu: r-mlr3: Update to 0.16.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-mlr3): Update to 0.16.1.
2023-07-12gnu: r-igraph: Update to 1.5.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-igraph): Update to 1.5.0. [propagated-inputs]: Add r-cli.
2023-07-12gnu: r-terra: Update to 1.7-39.Ricardo Wurmus
* gnu/packages/cran.scm (r-terra): Update to 1.7-39. [inputs]: Add curl, openssh, openssl, and pcre2.
2023-07-12gnu: r-leidenalg: Update to 1.1.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-leidenalg): Update to 1.1.0. [properties]: Add hint for updater to keep gmp as input.
2023-07-12gnu: Add r-envstats.Ricardo Wurmus
* gnu/packages/cran.scm (r-envstats): New variable.
2023-07-12gnu: r-gmp: Update to 0.7-2.Ricardo Wurmus
* gnu/packages/cran.scm (r-gmp): Update to 0.7-2. [arguments]: Remove obsolete build phase. [properties]: Tell updater that "gmp" is an extra input.
2023-07-12gnu: r-haven: Update to 2.5.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-haven): Update to 2.5.3. [properties]: Declare readstat as an extra input. [native-inputs]: Add pkg-config.
2023-07-12gnu: r-gprofiler2: Update to 0.2.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-gprofiler2): Update to 0.2.2. [native-inputs]: Add r-rmarkdown.
2023-07-12gnu: r-v8: Update to 4.3.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-v8): Update to 4.3.2. [properties]: Declare libnode as an extra input, not an ignored input.
2023-07-12gnu: r-lme4: Update to 1.1-34.Ricardo Wurmus
* gnu/packages/statistics.scm (r-lme4): Update to 1.1-34.
2023-07-12gnu: r-digest: Update to 0.6.33.Ricardo Wurmus
* gnu/packages/statistics.scm (r-digest): Update to 0.6.33. [native-inputs]: Add r-simplermarkdown.
2023-07-12import/cran: Add one more package name transformation.Ricardo Wurmus
* guix/import/cran.scm (transform-sysname): Add entry for "zlib-devel".
2023-07-12gnu: r-plotly: Update to 4.10.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-plotly): Update to 4.10.2.
2023-07-12gnu: r-opencpu: Update to 2.2.10.Ricardo Wurmus
* gnu/packages/cran.scm (r-opencpu): Update to 2.2.10. [properties]: Add hints for updater.
2023-07-12gnu: r-rgl: Update to 1.2.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-rgl): Update to 1.2.1. [properties]: Tell updater to not remove glu and libx11.
2023-07-12gnu: r-bslib: Update to 0.5.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-bslib): Update to 0.5.0. [source]: Delete minified JavaScript for components. [arguments]: Update 'process-javascript phase to generate components from source. [native-inputs]: Add typescript-components.
2023-07-12refresh: Sort update specs by package location.Ricardo Wurmus
Fixes <https://issues.guix.gnu.org/64358>. * guix/scripts/refresh.scm (guix-refresh): Sort update specs by location from bottom to top before updating packages.
2023-07-11gnu: rr: Fix typo in synopsis.jgart
* gnu/packages/debug.scm (rr) [synopsis]: Fix typo.
2023-07-11gnu: keepassxc: Fix broken home-page url.jgart
* gnu/packages/password-utils.scm (keepassxc): Fix broken url. [home-page]: Fix broken url.
2023-07-11gnu: nix: Update to 2.16.1.Zhu Zihao
* gnu/packages/package-management.scm (nix): Update to 2.16.1. [source]: Use HTTPS for package source. [inputs]: Add nlohmann-json. [native-inputs]: Add rapidcheck. [arguments]<#:phases>: In phase "check", change the value of environment variable "NIX_STORE" to "/nix/store" temporarily. * gnu/packages/patches/nix-dont-build-html-doc.diff: Update. Co-authored-by: jgart <jgart@dismail.de>
2023-07-11gnu: Add rapidcheck.Zhu Zihao
* gnu/packages/check.scm (rapidcheck): New variable.
2023-07-11gnu: Add python-redo.AwesomeAdam54321
* gnu/packages/python-xyz.scm (python-redo): New variable.
2023-07-11gnu: Add python-cloup.Daniel Meißner
* gnu/packages/python-xyz.scm (python-cloup): New variable. Co-authored-by: jgart <jgart@dismail.de>
2023-07-11gnu: rocm: Update to 5.6.0.John Kehayias
Update all of the ROCm packages at the same time as they share a version number and should be upgraded together, including llvm-for-rocm. * gnu/packages/llvm.scm (llvm-for-rocm): Update to 5.6.0. [source]{patches}: Remove unneeded patches (linkdl and remove-isystem-usr-include). * gnu/packages/rocm.scm (rocm-cmake, roct-thunk-interface): Update to 5.6.0. (rocclr-src): Update to 5.6.0. [source]{patches}: Add enable-gfx800 patch. (rocm-device-libs): Update to 5.6.0. [inputs]: Update style. (rocm-comgr): Update to 5.6.0. [inputs]: Remove lld. Update style. (rocr-runtime): Update to 5.6.0. [arguments]: Use gexps. Remove configure-flags. Add add-rocm-device-lib-path phase. [inputs]: Add libdrm. Update style. [native-inputs]: Add pkg-config. Update style. (rocm-opencl-runtime): Update to 5.6.0. [source]{patches}: Remove noopencl patch. [arguments]{configure-flags}: Add BUILD_ICD=OFF and FILE_REORG_BACKWARD_COMPATIBILITY=OFF flags. [inputs]: Add opencl-headers. (rocminfo): Update to 5.6.0. [arguments]: Use gexps. Use search-input-file instead of assoc-ref and which. (rocm-bandwidth-test): Update to 5.6.0. [source]{patches}: Add fix-includes patch. * gnu/packages/patches/rocm-comgr-3.1.0-dependencies.patch, gnu/packages/patches/rocm-opencl-runtime-4.3-noclinfo.patch: Update patches. * gnu/packages/patches/llvm-roc-4.0.0-remove-isystem-usr-include.patch, gnu/packages/patches/llvm-roc-5.0.0-linkdl.patch, gnu/packages/patches/rocm-opencl-runtime-4.3-noopencl.patch: Delete files. * gnu/packages/patches/rocm-bandwidth-test-5.5.0-fix-includes.patch, gnu/packages/patches/rocclr-5.6.0-enable-gfx800.patch: New files. * gnu/local.mk (dist_patch_DATA): Update patches.
2023-07-11gnu: Add emacs-sakura-theme.Ahmad Draidi
* gnu/packages/emacs-xyz.scm (emacs-sakura-theme): New variable. Signed-off-by: Andrew Tropin <andrew@trop.in>
2023-07-11gnu: Add emacs-abyss-theme.Ahmad Draidi
* gnu/packages/emacs-xyz.scm (emacs-abyss-theme): New variable. Signed-off-by: Andrew Tropin <andrew@trop.in>
2023-07-11gnu: Add emacs-starlit-theme.Ahmad Draidi
* gnu/packages/emacs-xyz.scm (emacs-starlit-theme): New variable. Signed-off-by: Andrew Tropin <andrew@trop.in>
2023-07-11gnu: emacs-dumbparens: Update to 0-1.59bb5ae.Ahmad Draidi
* gnu/packages/emacs-xyz.scm (emacs-dumbparens): Update to 0-1.59bb5ae. [source]: Download from new upstream URL. [home-page]: Use new home-page. Signed-off-by: Andrew Tropin <andrew@trop.in>
2023-07-11gnu: emacs-scroll-on-drag: Update to 0.1-2.179c2ac.Ahmad Draidi
* gnu/packages/emacs-xyz.scm (emacs-scroll-on-drag): Update to 0.1-2.179c2ac. [source]: Download from new upstream URL. [home-page]: Use new home-page. Signed-off-by: Andrew Tropin <andrew@trop.in>
2023-07-11gnu: emacs-mode-line-idle: Update to 0.2-0.1dc0115.Ahmad Draidi
* gnu/packages/emacs-xyz.scm (emacs-mode-line-idle): Update to 0.2-0.1dc0115. [source]: Download from new upstream URL. [home-page]: Use new home-page. Signed-off-by: Andrew Tropin <andrew@trop.in>
2023-07-11gnu: emacs-undo-fu-session: Update to 0.6-0.a6c4f73.Ahmad Draidi
* gnu/packages/emacs-xyz.scm (emacs-undo-fu-session): Update to 0.6-0.a6c4f73. [source]: Download from new upstream URL. [arguments]: Update #:test-command. Fix tests by adding '--eval (setq undo-fu-session-ignore-temp-files nil)' to #:test-command. [home-page]: Use new home-page. Signed-off-by: Andrew Tropin <andrew@trop.in>
2023-07-11gnu: emacs-undo-fu: Update to 0.5-0.0e22308.Ahmad Draidi
* gnu/packages/emacs-xyz.scm (emacs-undo-fu): Update to 0.5-0.0e22308. [source]: Download from new upstream URL. [home-page]: Use new home-page. Signed-off-by: Andrew Tropin <andrew@trop.in>
2023-07-11gnu: emacs-spell-fu: Update to 0.3-1.67a26b7.Ahmad Draidi
* gnu/packages/emacs-xyz.scm (emacs-spell-fu): Update to 0.3-1.67a26b7. [source]: Download from new upstream URL. [home-page]: Use new home-page. Signed-off-by: Andrew Tropin <andrew@trop.in>
2023-07-11gnu: gnuplot: Update to 5.4.8.Paul A. Patience
* gnu/packages/maths.scm (gnuplot): Update to 5.4.8. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-07-11gnu: gmsh: Update to 4.11.1.Paul A. Patience
* gnu/packages/maths.scm (gmsh): Update to 4.11.1. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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