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2023-03-03services: dbus: Deprecate 'dbus-service' procedure.Bruno Victal
* doc/guix.texi (Desktop Services): Replace with 'dbus-root-service-type'. Document dbus-configuration. * gnu/services/dbus.scm (dbus-service): Define with 'define-deprecated'. * gnu/services/desktop.scm (desktop-services-for-system): Replace with dbus-root-service-type. * gnu/system/install.scm (%installation-services): Ditto. * gnu/tests/base.scm (%avahi-os): Ditto. * gnu/tests/docker.scm (%docker-os): Ditto. * gnu/tests/lightdm.scm (minimal-desktop-services): Ditto. * gnu/tests/virtualization.scm (%libvirt-os): Ditto. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03services: spice: Deprecate 'spice-vdagent-service' procedure.Bruno Victal
* doc/guix.texi (Miscellaneous Services): Replace 'spice-vdagent-service' with 'spice-vdagent-service-type'. Document <spice-vdagent-configuration>. * gnu/services/spice.scm (spice-vdagent-service): Deprecate procedure. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03services: lirc: Deprecate 'lirc-service' procedure.Bruno Victal
* doc/guix.texi (Miscellaneous Services): Replace 'lirc-service' with 'lirc-service-type'. Document <lirc-configuration>. * gnu/services/lirc.scm (<lirc-configuration>): Set default values based on the arguments from the now deprecated 'lirc-service' procedure. (lirc-service-type): Set default value. (lirc-service): Deprecate procedure. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03services: vpn: Deprecate 'openvpn-client-service' & 'openvpn-server-service' ↵Bruno Victal
procedures. * doc/guix.texi (VPN Services): Replace 'openvpn-client-service' & 'openvpn-server-service' procedures with their service-type counterparts. * gnu/services/vpn.scm (openvpn-client-service, openvpn-server-service): Deprecate procedure. (openvpn-server-service-type, openvpn-client-service-type): Set default value. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03services: mail: Deprecate 'dovecot-service' procedure.Bruno Victal
* doc/guix.texi (Mail Services): Replace 'dovecot-service' with 'dovecot-service-type'. * gnu/services/mail.scm (dovecot-service-type): Set default value. (dovecot-service): Deprecate procedure. * gnu/tests/mail.scm (%dovecot-os): Use dovecot-service-type. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03services: desktop: Deprecate 'bluetooth-service' procedure.Bruno Victal
* doc/guix.texi (Desktop Services): Remove mention of 'bluetooth-service'. * gnu/services/desktop.scm (bluetooth-service): Deprecate procedure. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03services: desktop: Deprecate 'geoclue-service' procedure.Bruno Victal
* doc/guix.texi (Desktop Services): Replace 'geoclue-service' with 'geoclue-service-type'. * gnu/services/desktop.scm (<geoclue-configuration>): Set default values based on the values from the now deprecated geoclue-service procedure. (geoclue-service): Deprecate procedure. (desktop-services-for-system): Use geoclue-service-type. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03services: desktop: Deprecate 'udisks-service' procedure.Bruno Victal
* doc/guix.texi (Desktop Services): Replace 'udisks-service' with 'udisks-service-type'. Document <udisks-configuration>. * gnu/packages/kde-multimedia.scm (k3b)[description]: Replace 'udisks-service' with 'udisks-service-type'. * gnu/services/desktop.scm (udisks-service-type): Set default value. (udisks-service): Deprecate procedure. (desktop-services-for-system): Use udisks-service-type. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03services: dbus: Deprecate 'polkit-service' procedure.Bruno Victal
* doc/guix.texi (Desktop Services): Replace 'polkit-service' with 'polkit-service-type'. * gnu/services/dbus.scm (polkit-service): Deprecate procedure. * gnu/tests/docker.scm (%docker-os): Use polkit-service-type. * gnu/tests/virtualization.scm (%libvirt-os): Ditto. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03services: desktop: Deprecate 'accountsservice-service' procedure.Bruno Victal
* doc/guix.texi (Desktop Services): Replace 'accountsservice-service' with 'accountsservice-service-type'. * gnu/services/desktop.scm (accountsservice-service): Deprecate procedure. (desktop-services-for-system): Use accountsservice-service-type. * gnu/tests/lightdm.scm (minimal-desktop-services): Ditto. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03services: elogind-configuration: Do not ignore 'handle-hibernate-key' by ↵Bruno Victal
default. * gnu/services/desktop.scm (<elogind-configuration>)[handle-hibernate-key]: Set default value to 'hibernate. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03services: desktop: Deprecate 'elogind-service' procedure.Bruno Victal
* doc/guix.texi (Desktop Services): Replace 'elogind-service' with 'elogind-service-type'. * gnu/services/desktop.scm (elogind-service): Deprecate procedure. (desktop-services-for-system): Use elogind-service-type. * gnu/tests/lightdm.scm (minimal-desktop-services): Ditto. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03services: ssh: Deprecate 'dropbear-service' procedure.Bruno Victal
* doc/guix.texi (Networking Services): Replace 'dropbear-service' with 'dropbear-service-type'. * gnu/services/ssh.scm (dropbear-service): Deprecate procedure. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03services: ssh: Deprecate 'lsh-service' procedure.Bruno Victal
* doc/guix.texi (Networking Services): Remove mention of lsh-service. Document lsh-service-type and lsh-service-configuration. * gnu/services/ssh.scm (<lsh-configuration>): Set default values based on the now deprecated 'lsh-service' procedure. (lsh-service-type): Set default value. (lsh-service): Deprecate procedure. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03services: base: Deprecate 'rngd-service' procedure.Bruno Victal
* doc/guix.texi (Base Services): Replace rngd-service with rngd-service-type. Document <rngd-configuration>. * gnu/services/base.scm (<rngd-configuration>): Set default values from the values in the now deprecated 'rngd-service' procedure. (rngd-service): Deprecate procedure. (rngd-service-type): Set default value. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03services: base: Deprecate 'udev-service' procedure.Bruno Victal
* doc/guix.texi (Base Services): Replace udev-service with udev-service-type. Document <udev-configuration>. Use @defun @-commands for udev-rules-service, udev-rule and file->udev-rule. * gnu/services/base.scm (udev-service): Deprecate procedure. * gnu/system/install.scm (%installation-services): Use udev-service-type. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03services: base: Deprecate 'syslog-service' procedure.Bruno Victal
* doc/guix.texi (Base Services): Replace syslog-service with syslog-service-type. * gnu/services/base.scm (%default-syslog.conf): Place before <syslog-configuration>. (syslog-service-type): Set default value. (syslog-service): Deprecate procedure. (%base-services): Use syslog-service-type. * gnu/system/hurd.scm (%base-services/hurd): Ditto. * gnu/system/install.scm (%installation-services): Ditto. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03services: base: Deprecate 'nscd-service' procedure.Bruno Victal
* doc/guix.texi (Application Setup): Compress @cindex entries. (Base Services): Compress @cindex entries. Delete %nscd-default-configuration. Replace 'nscd-service' with 'nscd-service-type'. * gnu/services/base.scm (%nscd-default-configuration): Deprecate variable. (nscd-service): Deprecate procedure. * gnu/system/install.scm (%installation-services): Use nscd-service-type. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03doc: kmscon-service-type: Use @defvar @-command.Bruno Victal
* doc/guix.texi (Base Services): Use @defvar @-command for kmscon-service-type. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03services: base: Deprecate 'agetty-service' procedure.Bruno Victal
* doc/guix.texi (Base Services): Replace agetty-service with agetty-service-type. * gnu/services/base.scm (agetty-service): Deprecate procedure. * gnu/system/examples/beaglebone-black.tmpl (operating-system)[services]: Use agetty-service-type. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03services: base: Deprecate 'mingetty-service' procedure.Bruno Victal
* doc/guix.texi (Base Services): Replace mingetty-service with mingetty-service-type. * gnu/services/base.scm (mingetty-service): Deprecate procedure. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03services: base: Deprecate 'login-service' procedure.Bruno Victal
* doc/guix.texi (Base Services): Replace with login-service-type. * gnu/services/base.scm (login-service): Deprecate procedure. * gnu/system/install.scm (%installation-services): Use login-service-type. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03services: base: Deprecate 'host-name-service' procedure.Bruno Victal
* doc/guix.texi (operating-system Reference): Reorder cross-reference. Add an anchor to be used ... (Base services): ... here by host-name-service-type. Document host-name-service-type. * gnu/services/base.scm: Export host-name-service-type. (host-name-service): Deprecate procedure. * gnu/system.scm (operating-system-default-essential-services): Use host-name-service-type. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03gnu: Add r-seurat-utils.Navid Afkhami
* gnu/packages/bioinformatics.scm (r-seurat-utils): New variable.
2023-03-03gnu: Add r-hgnchelper.Navid Afkhami
* gnu/packages/cran.scm (r-hgnchelper): New variable.
2023-03-03gnu: Add r-tictoc.Navid Afkhami
* gnu/packages/bioinformatics.scm (r-tictoc): New variable.
2023-03-03gnu: Add r-ggexpress.Navid Afkhami
* gnu/packages/bioinformatics.scm (r-ggexpress): New variable.
2023-03-03gnu: Add r-markdownreports.Navid Afkhami
* gnu/packages/bioinformatics.scm (r-markdownreports): New variable.
2023-03-03gnu: Add r-markdownhelpers.Navid Afkhami
* gnu/packages/bioinformatics.scm (r-markdownhelpers): New variable.
2023-03-03gnu: Add r-codeandroll2.Navid Afkhami
* gnu/packages/bioinformatics.scm (r-codeandroll2): New variable.
2023-03-03gnu: Add r-readwriter.Navid Afkhami
* gnu/packages/bioinformatics.scm (r-readwriter): New variable.
2023-03-03gnu: Add r-stringendo.Navid Afkhami
* gnu/packages/bioinformatics.scm (r-stringendo): New variable.
2023-03-03gnu: Add julia-astrotime.Sharlatan Hellseher
* gnu/packages/julia-xyz.scm (julia-astrotime): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03gnu: Add julia-muladdmacro.Sharlatan Hellseher
* gnu/packages/julia-xyz.scm (julia-muladdmacro): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03gnu: Add julia-itemgraphs.Sharlatan Hellseher
* gnu/packages/julia-xyz.scm (julia-itemgraphs): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03gnu: Add julia-lightgraphs.Sharlatan Hellseher
* gnu/packages/julia-xyz.scm (julia-lightgraphs): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03gnu: Add julia-arnoldimethod.Sharlatan Hellseher
* gnu/packages/julia-xyz.scm (julia-arnoldimethod): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03gnu: Add julia-inflate.Sharlatan Hellseher
* gnu/packages/julia-xyz.scm (julia-inflate): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03gnu: Add julia-earthorientation.Sharlatan Hellseher
* gnu/packages/julia-xyz.scm (julia-earthorientation): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03gnu: Add julia-remotefiles.Sharlatan Hellseher
* gnu/packages/julia-xyz.scm (julia-remotefiles): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03gnu: Add julia-optionaldata.Sharlatan Hellseher
* gnu/packages/julia-xyz.scm (julia-optionaldata): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03gnu: Add julia-leapseconds.Sharlatan Hellseher
* gnu/packages/julia-xyz.scm (julia-leapseconds): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03git-download: Apply Git attributes on checkouts coming from SWH.Ludovic Courtès
Fixes a bug whereby CR/LF conversion, for instance, would not be applied on Git repositories retrieved from SWH: https://sympa.inria.fr/sympa/arc/swh-devel/2023-03/msg00000.html Reported by Simon Tournier <simon.tournier@inserm.fr>. Suggested by Valentin Lorentz <valentin.lorentz@inria.fr>. Co-authored by Simon Tournier <simon.tournier@inserm.fr>. * guix/git-download.scm (git-fetch)[build]: Add Git operations conditioned by '.gitattributes' on the result from SWH. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-03gnu: Add r-oscope.Navid Afkhami
* gnu/packages/bioconductor.scm (r-oscope): New variable.
2023-03-03gnu: cl-tripod: Fix build.Guillaume Le Vaillant
* gnu/packages/lisp-xyz.scm (sbcl-tripod)[arguments]: Use the 'assoc-ref' form for the bin output. (cl-tripod)[outputs]: Remove bin. (ecl-tripod)[outputs]: Remove bin. [arguments]: Remove 'build-program' phase.
2023-03-03gnu: eisl: Update to 2.72.Guillaume Le Vaillant
* gnu/packages/lisp.scm (eisl): Update to 2.72. [arguments]: Update 'fix-paths' phase.
2023-03-03gnu: gcl: Update to 2.6.14.Guillaume Le Vaillant
* gnu/packages/lisp.scm (gcl): Update to 2.6.14.
2023-03-03gnu: sbcl: Update to 2.3.2.Guillaume Le Vaillant
* gnu/packages/lisp.scm (sbcl): Update to 2.3.2.
2023-02-26gnu: fish: Update to 3.6.0.Winter
* gnu/packages/shells.scm (fish): Update to 3.6.0. [source]: Remove snippet, as the bundled PCRE2 sources have been removed (see CHANGELOG.rst). Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2023-02-26file-systems: Validate 'no-diratime flag.Tobias Geerinckx-Rice
This follows up on commit c0773455397746b10194bc14c7cef144f4095b65, and adds a comment to avoid this in future. * gnu/system/file-systems.scm (invalid-file-system-flags): Add 'no-diratime to the list of KNOWN-FLAGS.
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