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2017-12-21gnu: libarchive: Fix CVE-2017-14502....* gnu/packages/patches/libarchive-CVE-2017-14502.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/backup.scm (libarchive-3.3.2)[source]: Use it. Leo Famulari
2017-12-21gnu: Add python-tempdir....* gnu/packages/python.scm (python-tempdir, python2-tempdir): New variables. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Konrad Hinsen
2017-12-21gnu: libexif: Fix CVE-2017-7544....* gnu/packages/patches/libexif-CVE-2017-7544.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/photo.scm (feh)[source]: Use it. Leo Famulari
2017-12-21gnu: xboing: Fix CVE-2004-0149....* gnu/packages/patches/xboing-CVE-2004-0149: New file. * gnu/packages/games.scm (xboing)[source]: Add patch. * gnu/local.mk (dist_patch_DATA): Register it. Efraim Flashner
2017-12-21gnu: mupdf: Update to 1.12.0 [fixes CVE-2017-15369]....* gnu/packages/pdf.scm (mupdf): Update to 1.12.0. [source]: Remove obsolete patches. [inputs]: Add freeglut. * gnu/packages/patches/mupdf-CVE-2017-14685.patch, gnu/packages/patches/mupdf-CVE-2017-14686.patch, gnu/packages/patches/mupdf-CVE-2017-14687.patch, gnu/packages/patches/mupdf-CVE-2017-15587.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them. * gnu/packages/patches/mupdf-build-with-openjpeg-2.1.patch: Update and rename to... * gnu/packages/patches/mupdf-build-with-latest-openjpeg.patch: ... new file. Leo Famulari
2017-12-21gnu: weechat: Update to 2.0.1....* gnu/packages/irc.scm (weechat): Update to 2.0.1. Tobias Geerinckx-Rice
2017-12-21gnu: Add perl-test-requiresinternet....* gnu/packages/perl-check.scm (perl-test-requiresinternet): New public variable. Tobias Geerinckx-Rice
2017-12-20gnu: links: Fix-CVE-2017-11114....* gnu/packages/patches/links-CVE-2017-11114.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/web-browsers.scm (links)[source]: Use it. Leo Famulari
2017-12-20gnu: linux-libre: Update to 4.14.8....* gnu/packages/linux.scm (%linux-libre-version): Update to 4.14.8. (%linux-libre-hash): Update hash. Mark H Weaver
2017-12-20gnu: linux-libre@4.9: Update to 4.9.71....* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.71. Mark H Weaver
2017-12-20gnu: linux-libre@4.4: Update to 4.4.107....* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.107. Mark H Weaver
2017-12-20gnu: microscheme: Fix home page....* gnu/packages/avr.scm (microscheme)[home-page]: Use GitHub project page. Fixes <https://bugs.gnu.org/29791>. Ricardo Wurmus
2017-12-20gnu: gpgme: Build with the latest GnuPG....* gnu/packages/gnupg.scm (gpgme)[inputs]: Use the latest gnupg package. [arguments]: Keep a reference to the gnupg package used for build. Leo Famulari
2017-12-20gnu: python-pygpgme: Use GnuPG 1 for the test suite....* gnu/packages/gnupg.scm (python-pygpgme, python2-pygpgme)[inputs]: Use gnupg-1 and make it a native-input. Leo Famulari
2017-12-20gnu: libassuan: Update to 2.5.1....* gnu/packages/gnupg.scm (libassuan): Update to 2.5.1. Leo Famulari
2017-12-20gnu: exim: Update to 4.90....* gnu/packages/mail.scm (exim): Update to 4.90. Tobias Geerinckx-Rice
2017-12-20gnu: rng-tools: Update to 6.1....Rng-tools development appears to have moved to GitHub [0]: "NOTE: The rng-tools project hasn't seen updates in some time, but is still in active use. To facilitate ongoing development, the rng-tools project is moved to here: https://github.com/nhorman/rng-tools" [0] https://sourceforge.net/p/gkernel/wiki/Home/ * gnu/packages/linux.scm (rng-tools): Update to 6.1. [source]: Use new upstream URL and give a descriptive file-name. [arguments]: Add a 'bootstrap' phase. [native-inputs]: Add autoconf, automake, and pkg-config. [inputs]: Add sysfsutils. Leo Famulari
2017-12-20gnu: libressl: Update to 2.6.4....* gnu/packages/tls.scm (libressl): Update to 2.6.4. Signed-off-by: Leo Famulari <leo@famulari.name> Rutger Helling
2017-12-20gnu: babl: Update to 0.1.38....* gnu/packages/gimp.scm (babl): Update to 0.1.38. Leo Famulari
2017-12-19gnu: webkitgtk: Update to 2.18.4 [fixes CVE-2017-{7156,13856,13866,13870}]....* gnu/packages/webkit.scm (webkitgtk): Update to 2.18.4. Leo Famulari
2017-12-19gnu: r-htmltable: Update to 1.11.0....* gnu/packages/web.scm (r-htmltable): Update to 1.11.0. [propagated-inputs]: Add r-dplyr, r-htmltools, r-rstudioapi, and r-tidyr. Ricardo Wurmus
2017-12-19gnu: r-testthat: Update to 2.0.0....* gnu/packages/statistics.scm (r-testthat): Update to 2.0.0. [propagated-inputs]: Add r-cli, r-rlang, and r-withr. Ricardo Wurmus
2017-12-19gnu: Add r-cli....* gnu/packages/cran.scm (r-cli): New variable. Ricardo Wurmus
2017-12-19gnu: r-hardyweinberg: Update to 1.5.9....* gnu/packages/cran.scm (r-hardyweinberg): Update to 1.5.9. [propagated-inputs]: Add r-rsolnp. Ricardo Wurmus
2017-12-19gnu: Add r-rsolnp....* gnu/packages/cran.scm (r-rsolnp): New variable. Ricardo Wurmus
2017-12-19gnu: Add r-truncnorm....* gnu/packages/cran.scm (r-truncnorm): New variable. Ricardo Wurmus
2017-12-19gnu: r-curl: Update to 3.1....* gnu/packages/web.scm (r-curl): Update to 3.1. Ricardo Wurmus
2017-12-19gnu: r-ade4: Update to 1.7-10....* gnu/packages/statistics.scm (r-ade4): Update to 1.7-10. [propagated-inputs]: Add r-mass. Ricardo Wurmus
2017-12-19gnu: r-registry: Update to 0.5....* gnu/packages/statistics.scm (r-registry): Update to 0.5. Ricardo Wurmus
2017-12-19gnu: r-iterators: Update to 1.0.9....* gnu/packages/statistics.scm (r-iterators): Update to 1.0.9. Ricardo Wurmus
2017-12-19gnu: r-segmented: Update to 0.5-3.0....* gnu/packages/statistics.scm (r-segmented): Update to 0.5-3.0. Ricardo Wurmus
2017-12-19gnu: r-rprojroot: Update to 1.3-1....* gnu/packages/statistics.scm (r-rprojroot): Update to 1.3-1. Ricardo Wurmus
2017-12-19gnu: r-rcpparmadillo: Update to 0.8.300.1.0....* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.8.300.1.0. Ricardo Wurmus
2017-12-19gnu: r-plotrix: Update to 3.7....* gnu/packages/statistics.scm (r-plotrix): Update to 3.7. Ricardo Wurmus
2017-12-19gnu: r-git2r: Update to 0.20.0....* gnu/packages/statistics.scm (r-git2r): Update to 0.20.0. Ricardo Wurmus
2017-12-19gnu: r-backports: Update to 1.1.2....* gnu/packages/statistics.scm (r-backports): Update to 1.1.2. Ricardo Wurmus
2017-12-19gnu: r-yaml: Update to 2.1.16....* gnu/packages/statistics.scm (r-yaml): Update to 2.1.16. Ricardo Wurmus
2017-12-19gnu: r-reshape2: Update to 1.4.3....* gnu/packages/statistics.scm (r-reshape2): Update to 1.4.3. Ricardo Wurmus
2017-12-19gnu: r-digest: Update to 0.6.13....* gnu/packages/statistics.scm (r-digest): Update to 0.6.13. Ricardo Wurmus
2017-12-19gnu: r-vcd: Update to 1.4-4....* gnu/packages/cran.scm (r-vcd): Update to 1.4-4. Ricardo Wurmus
2017-12-19gnu: r-proxy: Update to 0.4-20....* gnu/packages/cran.scm (r-proxy): Update to 0.4-20. Ricardo Wurmus
2017-12-19gnu: r-biomart: Update to 2.34.1....* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.34.1. [propagated-inputs]: Add r-httr. Ricardo Wurmus
2017-12-19gnu: r-gviz: Update to 1.22.2....* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.22.2. Ricardo Wurmus
2017-12-19gnu: r-gqtlstats: Update to 1.10.1....* gnu/packages/bioinformatics.scm (r-gqtlstats): Update to 1.10.1. Ricardo Wurmus
2017-12-19gnu: r-rtracklayer: Update to 1.38.2....* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.38.2. Ricardo Wurmus
2017-12-19gnu: r-limma: Update to 3.34.4....* gnu/packages/bioinformatics.scm (r-limma): Update to 3.34.4. Ricardo Wurmus
2017-12-19gnu: r-edger: Update to 3.20.2....* gnu/packages/bioinformatics.scm (r-edger): Update to 3.20.2. Ricardo Wurmus
2017-12-19gnu: r-biocstyle: Update to 2.6.1....* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.6.1. Ricardo Wurmus
2017-12-19gnu: r-dexseq: Update to 1.24.2....* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.24.2. Ricardo Wurmus
2017-12-19gnu: r-vegan: Update to 2.4-5....* gnu/packages/bioinformatics.scm (r-vegan): Update to 2.4-5. Ricardo Wurmus
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