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* gnu/packages/finance.scm (bitcoin-core): Update to 0.18.0.
[inputs]: Use bdb-4.8 for compatibility.
[arguments]: Remove --with-incompatible-bdb from configure flags and add
check-functional phase for functional tests.
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* gnu/packages/dbm.scm (bdb-4.8): New variable.
[arguments]: Configure and build from 'build_unix' directory as
mentioned in documentation.
(bdb-5.3): Inherit from bdb-4.8.
(bdb-6): Inherit from bdb-4.8.
(bdb): Point to bdb-6.
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* etc/guix-install.sh (chk_gpg_keyring): Call gpg with ‘--dry-run’.
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* etc/guix-install.sh (chk_gpg_keyring): New function to handle the
public key check previously stuffed into chk_require.
(main): Call it.
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Previously, this code would cause crashes in Guix (running guix package -s for
example) which could be experienced when Emacs creates temporary files in the
gnu/packages/patches directory when a patch file has been edited, but not
saved.
* guix/discovery.scm (scheme-files): Add else clause to cond used when
handling symlinks.
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* etc/guix-install.sh (chk_require): Make $c local.
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Don't flatten it into a string only to split it again later.
* etc/guix-install.sh (chk_require): Iterate over array elements, not
string tokens.
(main): Pass $REQUIRE as an array of arguments.
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* doc/guix.texi (Invoking guix environment): Add --no-cwd.
* guix/scripts/environment.scm (show-help, %options): Add --no-cwd.
(launch-environment/container): Add 'map-cwd?' param; only add mapping
for cwd if #t. Only change to cwd within container if #t, otherwise
home.
(guix-environment): Error if --no-cwd without --container. Provide
'(not no-cwd?)' to launch-environment/container as 'map-cwd?'.
* tests/guix-environment.sh: Add test for no-cwd.
Co-authored-by: Mike Gerwitz <mtg@gnu.org>
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* guix/scripts/environment.scm (launch-environment/container): Only
apply override-user-mappings to user-mappings and cwd. Do not apply to
network configuration mapping and inputs.
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It requires R < 3.6 and is no longer supported.
* gnu/packages/bioinformatics.scm (r-biocinstaller): Define as
deprecated in favour of r-biocmanager.
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This is needed to deprecate r-biocinstaller, which is no longer
distributed.
* gnu/packages/bioinformatics.scm (r-xbioc): Update to 0.1.16-1.6ff0670.
[propagated-inputs]: Replace deprecated r-biocinstaller with
r-biocmanager.
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This follows up on commit 1de48e8f8afec23847458c533d2fae0d69d8942a.
* gnu/packages/algebra.scm (fplll-4-cmh): New variable.
(cmh)[inputs]: Use it.
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* gnu/packages/llvm.scm (libomp)[source]: Use HTTPS.
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This is a follow-up to commit c5296e205b65a9b53553cf45be2ab223d5e82df5,
which updated llvm.
* gnu/packages/llvm.scm (libomp)[source]: Fix hash.
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* gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm10-knowngene):
Update to 3.4.7.
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* gnu/packages/emacs-xyz.scm (emacs-polymode-org): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/emacs-xyz.scm (emacs-polymode): Update to 0.2.
[source]: Change URL of Git repository to Polymode GitHub project.
[homepage]: Change URL to polymode GitHub project.
[description]: Realign text.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/wm.scm (i3blocks): Update to ec050e7.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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Enable compatibility symlinks to provide commands such as `mkfs.vfat`.
* gnu/packages/disk.scm (dosfstools)[arguments]: Pass
"--enable-compat-symlinks" to configure.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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Replace the parent 'base-package' variable with a 'wireservice-package' macro
that includes all common package fields.
* gnu/packages/wireservice.scm (base-package): Delete.
(wireservice-package): New macro.
(python-leather, python-agate, python-agate-sql, python-agate-dbf,
python-agate-excel): Use wireservice-package.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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Previously, the channel instance to derivation mapping would be
independent of the system. Thus, building the same channel instance for
several different systems would always return the derivation that was
first computed.
This is a followup to c3ab921eed2a471022e9863a94ea521508782e53.
* guix/channels.scm (channel-instance-derivations)[instance->derivation]:
Pass the current system as a third argument to 'mcached'.
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Incorporate some changes from nixpkgs to the gobject-introspection package
patches. This is motivated by looking at issues with libsoup and lollypop.
These changes mean that the share/gir-1.0/Soup-2.4.gir file within
libsoup (and the corresponding binary typelib) references libsoup-2.4.so.1
with an absolute filename, whereas previously, the filename wasn't absolute.
With an absolute filename in the typelib, loading libsoup from lollypop should
work.
* gnu/packages/patches/gobject-introspection-absolute-shlib-path.patch:
Incorporate changes from nixpkgs.
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* gnu/packages/gps.scm (gama): Update to 2.06.
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* gnu/packages/package-management (diffoscope): Update to 116.
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This is necessary to fix a test failure on 32-bit platforms in 4.4.1.
* gnu/packages/check.scm (python-pytest): Update to 4.4.2.
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* gnu/packages/python-xyz.scm (python-pluggy): Update to 0.11.0.
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* gnu/packages/webkit.scm (webkitgtk)[native-inputs]: Change PYTHON-2 to
PYTHON-WRAPPER.
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* gnu/packages/audio.scm (jalv)[arguments]: Remove <#:phases>.
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* gnu/packages/gl.scm (mesa)[arguments]: Add <#:build-type>.
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* gnu/packages/documentation.scm (doxygen)[native-inputs]: Change PYTHON-2 to PYTHON.
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* gnu/packages/documentation.scm (doxygen)[native-inputs]: Change FLEX-2.6.1
to FLEX.
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* gnu/packages/freedesktop.scm (libinput)[arguments]: Add <#:build-type>.
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* guix/build-system/meson.scm (meson-build)[#:build-type]: Set to 'debugoptimized'.
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* gnu/packages/web.scm (libpsl)[inputs]: Move PYTHON-WRAPPER ...
[native-inputs]: ... here.
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Previously, the Python tests were skipped, because they require Python 3.
* gnu/packages/fontutils.scm (graphite2)[arguments]: New field.
[native-inputs]: Change PYTHON-2 and PYTHON2-FONTTOOLS to PYTHON and PYTHON-FONTTOOLS.
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* gnu/packages/compression.scm (zziplib)[arguments]: Set <#:test-target>.
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* gnu/packages/compression.scm (zziplib)[source]: Change to GIT-FETCH.
[argumnents]: New field.
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* gnu/packages/web.scm (libpsl)[inputs]: Change PYTHON-2 to PYTHON-WRAPPER.
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Ninja uses Python at run time, so it must not be a native input.
* gnu/packages/ninja.scm (ninja)[native-inputs]: Change to ...
[inputs]: ... this.
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* gnu/packages/ninja.scm (ninja)[native-inputs]: Change PYTHON-2 to PYTHON-WRAPPER.
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* gnu/packages/libevent.scm (libevent)[inputs]: Change PYTHON-2 to PYTHON-WRAPPER.
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* gnu/packages/glib.scm (itstool): Update to 2.0.6.
[inputs]: Change PYTHON2-LIBXML and PYTHON-2 to PYTHON-LIBXML and PYTHON.
* gnu/packages/gnome.scm (totem)[inputs]: Change PYTHON-2 to PYTHON.
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* gnu/packages/curl.scm (curl)[native-inputs]: Change PYTHON-2 to PYTHON-WRAPPER.
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* gnu/packages/icu4c.scm (icu4c)[arguments]: Don't override <#:tests?>.
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* gnu/packages/icu4c.scm (icu4c)[native-inputs]: Change PYTHON to
PYTHON-MINIMAL.
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* gnu/packages/python.scm (python-2.7)[arguments]: Pass "INSTALL" and
"MKDIR_P" in <#:configure-flags>.
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* gnu/packages/commencement.scm (python-boot0)[version, source]: Downgrade to 3.5.7.
[arguments]: Remove <#:make-flags>. Add <#:phases>.
[native-inputs]: Remove artifical dependency on PKG-CONFIG.
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* gnu/packages/wireservice.scm (csvkit): New variable.
* gnu/packages/patches/csvkit-fix-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/wireservice.scm (python-agate-excel): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/wireservice.scm (python-agate-dbf): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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