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2022-05-28gnu: r-annotationdbi: Update to 1.58.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.58.0.
2022-05-28gnu: r-annotate: Update to 1.74.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-annotate): Update to 1.74.0.
2022-05-28gnu: r-affxparser: Update to 1.68.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-affxparser): Update to 1.68.1.
2022-05-28gnu: r-affyio: Update to 1.66.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-affyio): Update to 1.66.0.
2022-05-28gnu: r-affycoretools: Update to 1.68.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.68.1.
2022-05-28gnu: r-affycontam: Update to 1.54.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-affycontam): Update to 1.54.0.
2022-05-28gnu: r-affycompatible: Update to 1.56.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-affycompatible): Update to 1.56.0.
2022-05-28gnu: r-affycomp: Update to 1.72.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-affycomp): Update to 1.72.0.
2022-05-28gnu: r-affy: Update to 1.74.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-affy): Update to 1.74.0.
2022-05-28gnu: r-isoformswitchanalyzer: Update to 1.18.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-isoformswitchanalyzer): Update to 1.18.0.
2022-05-28gnu: r-iranges: Update to 2.30.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-iranges): Update to 2.30.0.
2022-05-28gnu: r-ideoviz: Update to 1.32.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ideoviz): Update to 1.32.0.
2022-05-28gnu: r-bluster: Update to 1.6.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bluster): Update to 1.6.0.
2022-05-28gnu: r-drimseq: Update to 1.24.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-drimseq): Update to 1.24.0.
2022-05-28gnu: r-derfinderhelper: Update to 1.30.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-derfinderhelper): Update to 1.30.0.
2022-05-28gnu: r-delayedarray: Update to 0.22.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.22.0.
2022-05-28gnu: r-deepsnv: Update to 1.42.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-deepsnv): Update to 1.42.0.
2022-05-28gnu: r-decipher: Update to 2.24.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-decipher): Update to 2.24.0.
2022-05-28gnu: r-dearseq: Update to 1.8.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-dearseq): Update to 1.8.1. [propagated-inputs]: Add r-compquadform, r-dplyr, r-magrittr, r-reshape2, r-rlang, r-tibble, and r-viridislite. [native-inputs]: Add r-knitr.
2022-05-28gnu: r-cummerbund: Update to 2.38.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-cummerbund): Update to 2.38.0.
2022-05-28gnu: r-coverageview: Update to 1.34.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-coverageview): Update to 1.34.0.
2022-05-28gnu: r-biocgenerics: Update to 0.42.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.42.0.
2022-05-28gnu: r-biocversion: Update to 3.15.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocversion): Update to 3.15.2.
2022-05-28gnu: r-aneufinder: Update to 1.24.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-aneufinder): Update to 1.24.0.
2022-05-28gnu: r-adductomicsr: Update to 1.12.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-adductomicsr): Update to 1.12.0.
2022-05-28gnu: r-agilp: Update to 3.28.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-agilp): Update to 3.28.0.
2022-05-28gnu: r-aggregatebiovar: Update to 1.6.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-aggregatebiovar): Update to 1.6.0.
2022-05-28gnu: r-agdex: Update to 1.44.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-agdex): Update to 1.44.0.
2022-05-28gnu: r-affyrnadegradation: Update to 1.42.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-affyrnadegradation): Update to 1.42.0.
2022-05-28gnu: r-affixcan: Update to 1.14.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-affixcan): Update to 1.14.0.
2022-05-28gnu: r-adsplit: Update to 1.66.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-adsplit): Update to 1.66.0.
2022-05-28gnu: r-adimpute: Update to 1.6.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-adimpute): Update to 1.6.0.
2022-05-28gnu: r-adamgui: Update to 1.12.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-adamgui): Update to 1.12.0.
2022-05-28gnu: r-adam: Update to 1.12.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-adam): Update to 1.12.0.
2022-05-28gnu: r-absseq: Update to 1.50.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-absseq): Update to 1.50.0.
2022-05-28gnu: r-abarray: Update to 1.64.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-abarray): Update to 1.64.0.
2022-05-28gnu: r-biostrings: Update to 2.64.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.64.0. [arguments]: Remove build phase 'patch-for-R-4.2.0.
2022-05-28gnu: Add r-decoupler.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-decoupler): New variable.
2022-05-28guix: Upgrade to Bioconductor 3.15.Ricardo Wurmus
* guix/build-system/r.scm (bioconductor-uri): Bump Bioconductor version to 3.15. * guix/import/cran.scm (%bioconductor-version): Same.
2022-05-28gnu: apache-arrow: Update to 8.0.0.Ricardo Wurmus
* gnu/packages/databases.scm (apache-arrow): Update to 8.0.0.
2022-05-28gnu: Add r-rcppml.Ricardo Wurmus
* gnu/packages/cran.scm (r-rcppml): New variable.
2022-05-28gnu: Add r-dixontest.Ricardo Wurmus
* gnu/packages/cran.scm (r-dixontest): New variable.
2022-05-28gnu: r-biostrings: Patch for R 4.2.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biostrings)[arguments]: Add build phase 'patch-for-R-4.2.0.
2022-05-28gnu: r-rcurl: Update to 1.98-1.6.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rcurl): Update to 1.98-1.6. [source]: Take from CRAN. [arguments]: Remove trailing #T from build phase. [native-inputs]: Add libxml2. [inputs]: Use new input list style.
2022-05-28gnu: nlopt: Update to 2.7.1.Ricardo Wurmus
* gnu/packages/maths.scm (nlopt): Update to 2.7.1. [source]: Fetch from git. [build-system]: Use cmake-build-system. [arguments]: Adjuts 'set-libnlopt-file-name phase. [inputs]: Replace guile-2.0 with guile-3.0; add octave and python. [native-inputs]: Add swig.
2022-05-28gnu: r-binom: Update to 1.1-1.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-binom): Update to 1.1-1.1.
2022-05-28gnu: r-desctools: Update to 0.99.45.Ricardo Wurmus
* gnu/packages/statistics.scm (r-desctools): Update to 0.99.45. [propagated-inputs]: Add r-httr and r-readxl.
2022-05-28gnu: r-datasaurus: Update to 0.1.6.Ricardo Wurmus
* gnu/packages/statistics.scm (r-datasaurus): Update to 0.1.6.
2022-05-28gnu: r-logspline: Update to 2.1.17.Ricardo Wurmus
* gnu/packages/statistics.scm (r-logspline): Update to 2.1.17.
2022-05-28gnu: r-clubsandwich: Update to 0.5.6.Ricardo Wurmus
* gnu/packages/statistics.scm (r-clubsandwich): Update to 0.5.6.
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