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2016-09-02gnu: Add Infernal.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (infernal): New variable.
2016-09-02gnu: libidn: Replace with 1.33 [fixes CVE-2015-8948 and CVE-2016-{6261,6263}].Leo Famulari
* gnu/packages/libidn.scm (libidn)[replacement]: New field. (libidn-1.33): New variable.
2016-09-02gnu: python2-ipython: Use strip-python2-variant.Efraim Flashner
* gnu/packages/python.scm (python2-ipython): Inherit using strip-python2-variant. [propagated-inputs]: Remove work-around for python2-terminado. [inputs]: Remove work-around for python2-jsonschema, python2-matplotlib, python2-numpy, python2-requests. (python-inputs)[properties]: New field.
2016-09-02gnu: python2-numexpr: Use strip-python2-variant.Efraim Flashner
* gnu/packages/python.scm (python2-numexpr): Replace package definition with 'package-with-python2', using 'strip-python2-variant'.
2016-09-02gnu: python2-scikit-image: Use strip-python2-variant.Efraim Flashner
* gnu/packages/python.scm (python2-scikit-image): Inherit using strip-python2-variant. [propagated-inputs]: Remove work-around for python2-matplotlib, python2-numpy, python2-scipy.
2016-09-02gnu: python-scikit-learn: Set source file name.Efraim Flashner
* gnu/packages/python.scm (python-scikit-learn)[source]: Add 'file-name' field.
2016-09-02gnu: python2-scikit-learn: Use strip-python2-variant.Efraim Flashner
* gnu/packages/python.scm (python2-scikit-learn): Replace package definition with 'package-with-python2', using 'strip-python2-variant' to simplify the package definition.
2016-09-02gnu: python-requests-mock: Update to 1.0.0.Efraim Flashner
* gnu/packages/openstack.scm (python-requests-mock): Update to 1.0.0. [inputs]: Remove python-setuptools. Move python-mock ... [native-inputs]: ... to here. Add python-discover, python-fixtures, python-sphinx, python-testrepostory, python-testtools. [properties]: Add python2-variant. (python2-requests-mock): inherit stripped variant. [native-inputs]: Use python2-setuptools.
2016-09-01Revert "gnu: gsl: Update to 2.2."Mark H Weaver
This reverts commit b16b16e6c2ba9780ebdf936c325e06ebcc0a950b. Rationale: gsl-2.2 consistently fails its test suite on i686. Inkscape depends on gsl, and the grub background image is converted using inkscape, so i686 systems can no longer be built.
2016-09-02gnu: dtc: Add missing symbols patch from debian.Danny Milosavljevic
* gnu/packages/u-boot.scm (dtc)[source]: Add patch. * gnu/packages/patches/dtc-add-missing-symbols-to-lds.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: David Craven <david@craven.ch>
2016-09-01guix build: Rewrite '--with-input' in terms of 'package-input-rewriting'.Ludovic Courtès
* guix/scripts/build.scm (transform-package-inputs): Rewrite in terms of 'package-input-rewriting'.
2016-09-01packages: Add 'package-input-rewriting'.Ludovic Courtès
* guix/packages.scm (package-input-rewriting): New procedure. * tests/packages.scm ("package-input-rewriting"): New test. * doc/guix.texi (Defining Packages): Document it. (Package Transformation Options): Add cross-reference.
2016-09-01gnu: Fix typo in description of xfce-desktop-service.John Darrington
* gnu/services/desktop.scm (xfce-desktop-service) abilit --> ability.
2016-09-01gnu: Add rpcbindJohn Darrington
* gnu/packages/onc-rpc.scm (rpcbind): New variable.
2016-09-01gnu: Add telepathy-mission-control.Kei Kebreau
* gnu/packages/freedesktop.scm (telepathy-mission-control): New variable.
2016-09-01gnu: Add u-boot.Danny Milosavljevic
* gnu/packages/u-boot.scm (u-boot, make-u-boot-package, u-boot-vexpress_ca9x4, u-boot-malta): New variables. Co-authored-by: David Craven <david@craven.ch>
2016-09-01gnu: Add dtc.Danny Milosavljevic
* gnu/packages/u-boot.scm (dtc): New variable. * gnu/local.mk (GNU_SYSTEM_MODULES): Add file. Co-authored-by: David Craven <david@craven.ch>
2016-09-01Update 'TODO'.Vincent Legoll
* TODO: Remove items about guix challenge & guix publish. Signed-off-by: Vincent Legoll <vincent.legoll@gmail.com> Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-09-01Reinstate "services: elogind: Provide '%elogind-file-systems' by extension."Ludovic Courtès
This reverts commit 17073dafc59d62fb8cbb8b94d61d3ecc488ac59f.
2016-09-01gnu: slim: Move to display-managers.scm.Marius Bakke
* gnu/packages/display-managers.scm: New file. * gnu/packages/slim.scm: Delete file. * gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly. * gnu/services/xorg.scm: Likewise.
2016-09-01tests: hackage: Fix mock urls.Efraim Flashner
Followup to 18f747350437136b203ef6400176d1fb07b131ea. * tests/hackage.scm (hackage->guix-package): Use 'https' in mock urls.
2016-09-01gnu: Fix typo in copyright notice in (gnu packages networking).Mark H Weaver
* gnu/packages/networking.scm: "Coypright" --> "Copyright".
2016-08-31gnu: icedtea-6: Update to 1.13.12 [security fixes].Leo Famulari
Fixes CVE-2016-{3458,3485,3500,3508,3550,3606}. * gnu/packages/java.scm (icedtea-6): Update to 1.13.12. [source]: Remove 'icedtea-remove-overrides' patch. [arguments]: Move ALSA header substitution to 'patch-paths' phase. * gnu/packages/patches/icedtea-remove-overrides.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2016-08-31gnu: rofi: Update to 1.2.0.Marius Bakke
* gnu/packages/xdisorg.scm (rofi): Update to 1.2.0. [inputs]: Drop libx11 and add xcb-util-xrm. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-08-31gnu: Add xcb-util-xrm.Marius Bakke
* gnu/packages/xdisorg.scm (xcb-util-xrm): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-08-31gnu: wcslib: Correct formatting and grammar.John Darrington
* gnu/packages/astronomy.scm (wcslib): Minor whitespace and grammatical changes.
2016-08-31gnu: bambam: Remove wrap-binary phase.Eric Bavier
Functionality provided already by python-build-system. * gnu/packages/games.scm (bambam)[arguments]: Remove 'wrap-binary phase. [synopsis]: Capitalize first word.
2016-08-31tests: cpan: Fix mock urls.Eric Bavier
Followup to 7a62263ee5. * tests/cpan.scm (cpan->guix-package): Use "https" in mock urls.
2016-08-31services: shepherd: Add 'shepherd-service-upgrade', from 'guix system'.Ludovic Courtès
* guix/scripts/system.scm (service-upgrade): Move to... * gnu/services/shepherd.scm (shepherd-service-upgrade): ... here. * tests/system.scm ("service-upgrade: nothing to do", "service-upgrade: one unchanged, one upgraded, one new", "service-upgrade: service depended on is not unloaded", "service-upgrade: obsolete services that depend on each other"): Move to... * tests/services.scm: ... here. Adjust to 'service-upgrade' rename.
2016-08-31guix system: Do not unload services depended on.Ludovic Courtès
Reported by Mark H Weaver <mhw@netris.org> at <https://lists.gnu.org/archive/html/guix-devel/2016-08/msg01470.html>. * guix/scripts/system.scm (service-upgrade)[live-service-required?]: New procedure. [obsolete?]: Use it. * tests/system.scm ("service-upgrade: service depended on is not unloaded", "service-upgrade: obsolete services that depend on each other"): New tests.
2016-08-31services: shepherd: Parameterize 'shepherd-service-back-edges'.Ludovic Courtès
* gnu/services/shepherd.scm (shepherd-service-back-edges): Add #:provision and #:requirement parameter. Honor them.
2016-08-31guix system: Use 'shepherd-service-lookup-procedure' in 'service-upgrade'.Ludovic Courtès
* guix/scripts/system.scm (service-upgrade)[essential?]: SERVICE is now a <live-service>. [lookup-target, lookup-live, running?, stopped, obsolete?]: New procedures. [to-load, to-unload]: Use them. TO-UNLOAD is now a list of <live-service>. (call-with-service-upgrade-info): Extract symbols from TO-UNLOAD. * tests/system.scm ("service-upgrade: one unchanged, one upgraded, one new"): Adjust accordingly.
2016-08-31services: shepherd: Add 'shepherd-service-lookup-procedure'.Ludovic Courtès
* gnu/services/shepherd.scm (shepherd-service-lookup-procedure): New procedure. (shepherd-service-back-edges)[provision->service]: Use it. * tests/services.scm ("shepherd-service-lookup-procedure"): New test.
2016-08-31guix system: Extract and test the service upgrade procedure.Ludovic Courtès
* guix/scripts/system.scm (service-upgrade): New procedure, with code from... (call-with-service-upgrade-info): ... here. Use it. * tests/system.scm (live-service, service-upgrade): New variables. ("service-upgrade: nothing to do", "service-upgrade: one unchanged, one upgraded, one new"): New tests.
2016-08-31services: herd: Provide <live-service> objects.Ludovic Courtès
* gnu/services/herd.scm (<live-service>): New record type. (current-services): Change to return a single value: #f or a list of <live-service>. * guix/scripts/system.scm (call-with-service-upgrade-info): Adjust accordingly. * gnu/tests/base.scm (run-basic-test)["shepherd services"]: Adjust accordingly.
2016-08-31doc: Fix 'ntp-service' typo.Ludovic Courtès
Reported by Vincent Legoll <vincent.legoll@gmail.com>. * doc/guix.texi (Networking Services): Change #:name-service to #:servers in 'ntp-service' documentation.
2016-08-31gnu: subread: Update to 1.5.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (subread): Update to 1.5.1.
2016-08-31gnu: Add emacs-auto-complete.ng0
* gnu/packages/emacs.scm (emacs-auto-complete): New variable. Signed-off-by: Alex Kost <alezost@gmail.com>
2016-08-31gnu: Add emacs-cyberpunk-theme.ng0
* gnu/packages/emacs.scm (emacs-cyberpunk-theme): New variable. Signed-off-by: Alex Kost <alezost@gmail.com>
2016-08-31gnu: Add emacs-flx.ng0
* gnu/packages/emacs.scm (emacs-flx): New variable. Signed-off-by: Alex Kost <alezost@gmail.com>
2016-08-31gnu: aragorn: Update to 1.2.37.Ben Woodcroft
* gnu/packages/bioinformatics.scm (aragorn): Update to 1.2.37.
2016-08-31gnu: autojump: Fix failing tests.Eric Bavier
This is a followup to 1d33b9e; test script was moved in upgrade to version 22.3.4. * gnu/packages/admin.scm (autojump)[arguments]: Adjust unit test script file name.
2016-08-31gnu: Add bambam.Efraim Flashner
* gnu/packages/games.scm (bambam): New variable.
2016-08-31gnu: alsa-utils: Use 'modify-phases'.Efraim Flashner
* gnu/packages/linux.scm (alsa-utils)[arguments]: Use 'modify-phases' syntax.
2016-08-31gnu: alsa-utils: Update to 1.1.2.Efraim Flashner
* gnu/packages/linux.scm (alsa-utils): Update to 1.1.2.
2016-08-31gnu: Add gnuastroJohn Darrington
* gnu/packages/astronomy.scm (gnuastro): New variable.
2016-08-31gnu: Add wcslibJohn Darrington
* gnu/packages/astronomy.scm (wcslib): New variable.
2016-08-31gnu: Add cfitsioJohn Darrington
* gnu/packages/astronomy.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2016-08-31gnu: fossil: Update to 1.35.Efraim Flashner
* gnu/packages/version-control.scm (fossil): Update to 1.35. [source]: Download from fossil-scm.org, remove patch, remove snippet. * gnu/packages/patches/fossil-test-fixes.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
2016-08-30gnu: Add telepathy-idle.Kei Kebreau
* gnu/packages/freedesktop.scm (telepathy-idle): New variable.
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