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2020-12-09gnu: r-inline: Update to 0.3.17....* gnu/packages/cran.scm (r-inline): Update to 0.3.17. Ricardo Wurmus
2020-12-09gnu: r-extremes: Update to 2.1....* gnu/packages/cran.scm (r-extremes): Update to 2.1. Ricardo Wurmus
2020-12-09gnu: r-distillery: Update to 1.2....* gnu/packages/cran.scm (r-distillery): Update to 1.2. Ricardo Wurmus
2020-12-09gnu: r-circlize: Update to 0.4.11....* gnu/packages/cran.scm (r-circlize): Update to 0.4.11. Ricardo Wurmus
2020-12-09gnu: r-ps: Update to 1.5.0....* gnu/packages/cran.scm (r-ps): Update to 1.5.0. Ricardo Wurmus
2020-12-09gnu: r-colorspace: Update to 2.0-0....* gnu/packages/cran.scm (r-colorspace): Update to 2.0-0. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-12-09gnu: r-shinyfiles: Update to 0.9.0....* gnu/packages/cran.scm (r-shinyfiles): Update to 0.9.0. Ricardo Wurmus
2020-12-09gnu: r-vegan: Update to 2.5-7....* gnu/packages/cran.scm (r-vegan): Update to 2.5-7. [propagated-inputs]: Remove r-knitr. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-12-09gnu: r-ggpmisc: Update to 0.3.7....* gnu/packages/cran.scm (r-ggpmisc): Update to 0.3.7. Ricardo Wurmus
2020-12-09gnu: r-ggalluvial: Update to 0.12.3....* gnu/packages/cran.scm (r-ggalluvial): Update to 0.12.3. Ricardo Wurmus
2020-12-09gnu: r-v8: Update to 3.4.0....* gnu/packages/cran.scm (r-v8): Update to 3.4.0. Ricardo Wurmus
2020-12-09gnu: r-rticles: Update to 0.17....* gnu/packages/cran.scm (r-rticles): Update to 0.17. Ricardo Wurmus
2020-12-09gnu: r-magrittr: Update to 2.0.1....* gnu/packages/statistics.scm (r-magrittr): Update to 2.0.1. Ricardo Wurmus
2020-12-09import/utils: Fix conditional....This is a follow-up to commit 45584061a9ebe961e2be08ee94c3fe8ad74e2713. * guix/import/utils.scm (package->definition): Use EQ? instead of = to compare truthiness; use ELSE instead of (#T). Ricardo Wurmus
2020-12-09gnu: r-d3r: Update to 0.9.1....* gnu/packages/cran.scm (r-d3r): Update to 0.9.1. [arguments]: Use esbuild for minification. [native-inputs]: Add source for D3 version 6; replace uglify-js with esbuild. Ricardo Wurmus
2020-12-09gnu: Add r-projpred....* gnu/packages/cran.scm (r-projpred): New variable. Ricardo Wurmus
2020-12-09gnu: Add r-optimx....* gnu/packages/cran.scm (r-optimx): New variable. Ricardo Wurmus
2020-12-09gnu: Add r-gamm4....* gnu/packages/cran.scm (r-gamm4): New variable. Ricardo Wurmus
2020-12-09gnu: Add r-fds....* gnu/packages/cran.scm (r-fds): New variable. Ricardo Wurmus
2020-12-09gnu: Add r-rainbow....* gnu/packages/cran.scm (r-rainbow): New variable. Ricardo Wurmus
2020-12-09gnu: Add r-hdrcde....* gnu/packages/cran.scm (r-hdrcde): New variable. Ricardo Wurmus
2020-12-09gnu: Add r-ash....* gnu/packages/cran.scm (r-ash): New variable. Ricardo Wurmus
2020-12-09gnu: Add r-parallelly....* gnu/packages/cran.scm (r-parallelly): New variable. Ricardo Wurmus
2020-12-09gnu: Add r-gitcreds....* gnu/packages/cran.scm (r-gitcreds): New variable. Ricardo Wurmus
2020-12-09gnu: Add r-waldo....* gnu/packages/cran.scm (r-waldo): New variable. Ricardo Wurmus
2020-12-09gnu: Add r-diffobj....* gnu/packages/cran.scm (r-diffobj): New variable. Ricardo Wurmus
2020-12-09gnu: Add r-brio....* gnu/packages/cran.scm (r-brio): New variable. Ricardo Wurmus
2020-12-09gnu: python-llfuse: Update to 1.3.8....* gnu/packages/python-xyz.scm (python-llfuse): Update to 1.3.8. Leo Famulari
2020-12-09gnu: dealii: Update to 9.2.0....* gnu/packages/maths.scm (dealii): Update to 9.2.0. Eric Bavier
2020-12-09gnu: Add r-restrserve....* gnu/packages/cran.scm (r-restrserve): New variable. Signed-off-by: Christopher Baines <mail@cbaines.net> Eric Brown
2020-12-09gnu: Add kiwix-desktop....* gnu/packages/web.scm (kiwix-desktop): New variable. Pierre Neidhardt
2020-12-09gnu: Add kiwix-lib....* gnu/packages/web.scm (kiwix-lib): New variable. Pierre Neidhardt
2020-12-09gnu: Add libzim....* gnu/packages/web.scm (libzim): New variable. Pierre Neidhardt
2020-12-09gnu: Add emacs-helm-switch-to-repl....* gnu/packages/emacs-xyz.scm (emacs-helm-switch-to-repl): New variable. Pierre Neidhardt
2020-12-09gnu: emacs-debbugs: Update to 0.27....* gnu/packages/emacs-xyz.scm (emacs-debbugs): Update to 0.27. Nicolas Goaziou
2020-12-09gnu: pciutils: Fix compilation error on GNU/Hurd....* gnu/packages/patches/pciutils-hurd-fix.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/pciutils.scm (pciutils)[arguments]: Add 'apply-hurd-patch' phase when (hurd-target?) is true. [inputs]: Add "hurd-patch" entry when (hurd-target?) is true. Ludovic Courtès
2020-12-09doc: Document 'advertise?' for 'guix-publish-configuration'....* doc/guix.texi (Base Services): Document the 'advertise?' field of 'guix-publish-configuration'. Ludovic Courtès
2020-12-09services: guix-publish: Depend on 'avahi-daemon' when needed....* gnu/services/base.scm (guix-publish-shepherd-service): Add 'user-processes' to 'requirement'. When ADVERTISE? is true, also add 'avahi-daemon'. Ludovic Courtès
2020-12-09services: avahi: Depend on 'user-processes'....* gnu/services/avahi.scm (avahi-shepherd-service): Add 'user-processes' to 'requirement'. Ludovic Courtès
2020-12-09gnu: r-diffbind: Update to 3.0.8....* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.0.8. Ricardo Wurmus
2020-12-09gnu: r-rhtslib: Propagate zlib....* gnu/packages/bioinformatics.scm (r-rhtslib)[inputs]: Move zlib from here... [propagated-inputs]: ...to here. (r-variantannotation, r-rsamtools, r-bamsignals, r-rhdf5, r-methylkit)[inputs]: Remove zlib. * gnu/packages/bioconductor.scm (r-diffbind, r-quasr, r-cytolib, r-ncdfflow, r-flowworkspace, r-seqbias)[inputs]: Remove zlib. Ricardo Wurmus
2020-12-09gnu: r-delayedmatrixstats: Update to 1.12.1....* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.12.1. [propagated-inputs]: Add r-matrixgenerics. Ricardo Wurmus
2020-12-09gnu: r-gqtlstats: Update to 1.21.3....* gnu/packages/bioinformatics.scm (r-gqtlstats): Update to 1.21.3. zimoun
2020-12-09gnu: r-gqtlbase: Update to 1.21.1....Co-authored-by: Ricardo Wurmus <rekado@elephly.net> * gnu/packages/bioinformatics.scm (r-gqtlbase): Update to 1.21.1. [arguments]: Add phase to patch broken NAMESPACE file. zimoun
2020-12-09gnu: r-bigmelon: Update to 1.16.0....* gnu/packages/bioconductor.scm (r-bigmelon): Update to 1.16.0. zimoun
2020-12-09gnu: r-watermelon: Update to 1.34.0....* gnu/packages/bioconductor.scm (r-watermelon): Update to 1.34.0. zimoun
2020-12-09gnu: r-yarn: Update to 1.16.0....* gnu/packages/bioconductor.scm (r-yarn): Update to 1.16.0. zimoun
2020-12-09gnu: r-quantro: Update to 1.24.0....* gnu/packages/bioconductor.scm (r-quantro): Update to 1.24.0. zimoun
2020-12-09gnu: r-lumi: Update to 2.42.0....* gnu/packages/bioconductor.scm (r-lumi): Update to 2.42.0. zimoun
2020-12-09gnu: r-methylumi: Update to 2.36.0....* gnu/packages/bioconductor.scm (r-methylumi): Update to 2.36.0. zimoun
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