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2021-03-05gnu: emacs-eglot: Add missing dependency....* gnu/packages/emacs-xyz.scm (emacs-eglot):[arguments] Add dependency. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> John Soo
2021-03-05gnu: Add emacs-eldoc....* gnu/packages/emacs-xyz.scm (emacs-eldoc): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> John Soo
2021-03-05gnu: php: Update to 7.4.16 [security fixes]....* gnu/packages/php.scm (php): Update to 7.4.16. [arguments]: Patch failing new test. Tobias Geerinckx-Rice
2021-03-05gnu: Add r-circrnaprofiler....* gnu/packages/bioconductor.scm (r-circrnaprofiler): New variable. Mădălin Ionel Patrașcu
2021-03-05gnu: Add r-universalmotif....* gnu/packages/bioconductor.scm (r-universalmotif): New variable. Mădălin Ionel Patrașcu
2021-03-05gnu: Add r-rcppthread....* gnu/packages/cran.scm (r-rcppthread): New variable. Mădălin Ionel Patrașcu
2021-03-05gnu: camlboot: Raise max-silent-time timeout value to 4 hours....* gnu/packages/ocaml.scm (camlboot)[properties]: Add a 'max-silent-time' property, with a value of 4 hours. Julien Lepiller
2021-03-05gnu: Add r-cellchat....* gnu/packages/bioinformatics.scm (r-cellchat): New variable. Ricardo Wurmus
2021-03-05gnu: Add r-gg-gap....* gnu/packages/cran.scm (r-gg-gap): New variable. Ricardo Wurmus
2021-03-05gnu: virtualpg: Update to 2.0.1....* gnu/packages/geo.scm (virtualpg): Update to 2.0.1. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Felix Gruber
2021-03-05gnu: racket: Update to 8.0....* gnu/packages/scheme.scm (racket): Update to 8.0. [arguments]: Add #:configure-flags. Add 'patch-chez-configure' phase. [inputs]: Add "zlib", "zlib:static", "lz4", and "lz4:static". [synopsis, description]: Tweak. (racket-minimal): Update to 8.0. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Philip McGrath
2021-03-05tests: Refer to '%derivation-cache' in the right module....* guix/tests.scm (call-with-external-store): Fix module name for '%derivation-cache'. Ludovic Courtès
2021-03-05download: 'url-fetch/tarbomb' and 'url-fetch/zipbomb' refer to native tools....* guix/download.scm (url-fetch/tarbomb, url-fetch/zipbomb): Use 'ungexp-native' instead of 'ungexp' when referring to the decompression tools. Ludovic Courtès
2021-03-05gexp: Honor #:target in 'compiled-modules'....* guix/gexp.scm (compiled-modules): Pass #:target to 'gexp->derivation'. Ludovic Courtès
2021-03-05doc: Refer to the right node for '--keep-failed'....* doc/guix.texi (Invoking guix-daemon, Debugging Build Failures): Refer to "Common Build Options" for '--keep-failed'. Ludovic Courtès
2021-03-05profiles: 'package->manifest-entry' preserves transformations by default....Previously, transformations applied from a manifest (rather than via "guix install") would be lost. This change fixes that and simplifies things. Reported by zimoun at <https://lists.gnu.org/archive/html/guix-devel/2021-02/msg00153.html>. * guix/profiles.scm (default-properties): New procedure. (package->manifest-entry): Use it for #:properties. * guix/scripts/pack.scm (guix-pack)[with-transformations]: Remove. Remove caller. * guix/scripts/package.scm (transaction-upgrade-entry): Remove calls to 'manifest-entry-with-transformations'. * tests/guix-package.sh: Add test. * tests/transformations.scm ("options->transformation + package->manifest-entry"): New test. Ludovic Courtès
2021-03-05gnu: hamlib: Update to 4.1....* gnu/packages/radio.scm (hamlib): Update to 4.1. Guillaume Le Vaillant
2021-03-05services: guix-build-coordinator: Add dynamic auth with file record....* gnu/services/guix.scm (guix-build-coordinator-agent-dynamic-auth-with-file, guix-build-coordinator-agent-dynamic-auth-with-filen?, guix-build-coordinator-agent-dynamic-auth-with-file-agent-name, guix-build-coordinator-agent-dynamic-auth-with-file-token-file): New procedures. (guix-build-coordinator-agent-shepherd-services): Handle new dynamic auth with file record. * doc/guix.texi (Guix Build Coordinator): Document the new dynamic auth with file record. Christopher Baines
2021-03-04gnu: mupdf: Fix CVE-2021-3407....* gnu/packages/pdf.scm (mupdf)[source]: Add patch. * gnu/packages/patches/mupdf-CVE-2021-3407.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Kei Kebreau
2021-03-04gnu: linux-libre 4.19: Update to 4.19.178....* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.178. (linux-libre-4.19-pristine-source): Update hash. Leo Famulari
2021-03-04gnu: linux-libre 5.4: Update to 5.4.102....* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.102. (linux-libre-5.4-pristine-source): Update hash. Leo Famulari
2021-03-04gnu: linux-libre 5.10: Update to 5.10.20....* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.20. (linux-libre-5.10-pristine-source): Update hash. Leo Famulari
2021-03-04gnu: linux-libre: Update to 5.11.3....* gnu/packages/linux.scm (linux-libre-5.11-version): Update to 5.11.3. (linux-libre-5.11-pristine-source, deblob-scripts-5.11): Update hashes. Leo Famulari
2021-03-04gnu: ruby-minitest: Update to 5.12.2....* gnu/packages/ruby.scm (ruby-minitest): Update to 5.12.2. Efraim Flashner
2021-03-04gnu: ruby-builder: Update to 3.2.4....* gnu/packages/ruby.scm (ruby-builder): Update to 3.2.4. Efraim Flashner
2021-03-04gnu: ripgrep: Fix build....* gnu/packages/rust-apps.scm (ripgrep)[arguments]: Disable tests for now. Some are failing due to recent rust-bstr upgrade. Nicolas Goaziou
2021-03-04gnu: mariadb-connector-c: Fix source tarball file name....* gnu/packages/databases.scm (mariadb-connector-c)[source]: Add a FILE-NAME. Tobias Geerinckx-Rice
2021-03-04gnu: mariadb-connector-c: Update to 3.1.12....* gnu/packages/databases.scm (mariadb-connector-c): Update to 3.1.12. Tobias Geerinckx-Rice
2021-03-04gnu: pigz: Update to 2.6....* gnu/packages/compression.scm (pigz): Update to 2.6. Tobias Geerinckx-Rice
2021-03-04gnu: clzip: Update to 1.12....* gnu/packages/compression.scm (clzip): Update to 1.12. Tobias Geerinckx-Rice
2021-03-04gnu: simde: Update to 0.7.2....* gnu/packages/assembly.scm (simde): Update to 0.7.2. Tobias Geerinckx-Rice
2021-03-04gnu: fasm: Update to 1.73.27....* gnu/packages/assembly.scm (fasm): Update to 1.73.27. Tobias Geerinckx-Rice
2021-03-04gnu: libolm: Update to 3.2.2....* gnu/packages/crypto.scm (libolm): Update to 3.2.2. Tobias Geerinckx-Rice
2021-03-04gnu: indi: Update to 1.8.9....* gnu/packages/astronomy.scm (indi): Update to 1.8.9. Tobias Geerinckx-Rice
2021-03-04gnu: oath-toolkit: Update to 2.6.6....* gnu/packages/authentication.scm (oath-toolkit): Update to 2.6.6. Tobias Geerinckx-Rice
2021-03-04gnu: libisofs: Update to 1.5.4....* gnu/packages/cdrom.scm (libisofs): Update to 1.5.4. Tobias Geerinckx-Rice
2021-03-04gnu: python-jedi: Allow test phase to be skipped....* gnu/packages/python-xyz.scm (python-jedi)[arguments]: Wrap custom 'check phase tests with check for tests? keyword. Efraim Flashner
2021-03-04gnu: dovecot-pigeonhole: Update to 0.5.14....* gnu/packages/mail.scm (dovecot-pigeonhole): Update to 0.5.14. Tobias Geerinckx-Rice
2021-03-04gnu: dovecot: Update to 2.3.14....* gnu/packages/mail.scm (dovecot): Update to 2.3.14. Tobias Geerinckx-Rice
2021-03-04gnu: python-plotly: Allow test phase to be skipped....* gnu/packages/graph.scm (python-plotly)[arguments]: Wrap custom 'check phase tests with test with tests? keyword. Efraim Flashner
2021-03-04gnu: python-plotly: Update to 4.14.3....* gnu/packages/graph.scm (python-plotly): Update to 4.14.3. [propagated-inputs]: Remove python-decorator. Add python-ipython, python-pillow. Move python-ipywidgets, python-xarray ... [native-inputs]: ... to here. Efraim Flashner
2021-03-04gnu: Add tinmop....* gnu/packages/web-browsers.scm (tinmop): New variable. Co-authored-by: Guillaume Le Vaillant <glv@posteo.net> cage
2021-03-04gnu: sbcl-esrap: Update to 0.18-1.da6b24f....* gnu/packages/lisp-xyz.scm (sbcl-esrap): Update to 0.18-1.da6b24f. [source, home-page]: Update to new maintainer's URL. [native-inputs]: Remove eos, add fiveam. [description]: Add new features. Guillaume Le Vaillant
2021-03-04gnu: Add cl-percent-encoding....* gnu/packages/lisp-xyz.scm (cl-percent-encoding, ecl-percent-encoding, sbcl-percent-encoding): New variables. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> cage
2021-03-04gnu: Add cl-html5-parser....* gnu/packages/lisp-xyz.scm (cl-html5-parser, ecl-cl-html5-parser, sbcl-cl-html5-parser): New variables. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> cage
2021-03-04gnu: Add cl-crypto-shortcuts....* gnu/packages/lisp-xyz.scm (cl-crypto-shortcuts, ecl-crypto-shortcuts, sbcl-crypto-shortcuts): New variables. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> cage
2021-03-04gnu: Add cl-i18n....* gnu/packages/lisp-xyz.scm (cl-i18n, ecl-cl-i18n, sbcl-cl-i18n): New variables. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> cage
2021-03-04gnu: Add cl-sxql-composer....* gnu/packages/lisp-xyz.scm (cl-sxql-composer, ecl-sxql-composer, sbcl-sxql-composer): New variables. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Guillaume Le Vaillant
2021-03-04gnu: Add cl-access....* gnu/packages/lisp-xyz.scm (cl-access, ecl-access, sbcl-access): New variables. Co-authored-by: Guillaume Le Vaillant <glv@posteo.net> cage
2021-03-04gnu: Add cl-spark....* gnu/packages/lisp-xyz.scm (cl-spark, ecl-cl-spark, sbcl-cl-spark): New variables. Co-authored-by: Guillaume Le Vaillant <glv@posteo.net> cage