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2021-03-03gnu: linux-libre 4.4: Update to 4.4.259....* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.259. (linux-libre-4.4-pristine-source): Update hash. Leo Famulari
2021-03-03gnu: linux-libre 4.9: Update to 4.9.259....* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.259. (linux-libre-4.9-pristine-source): Update hash. Leo Famulari
2021-03-03gnu: linux-libre 4.14: Update to 4.14.223....* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.223. (linux-libre-4.14-pristine-source): Update hash. Leo Famulari
2021-03-03gnu: libmatroska: Update to 1.6.3....* gnu/packages/video.scm (libmatroska): Update to 1.6.3. Léo Le Bouter
2021-03-03gnu: libebml: Update to 1.4.2 [fixes CVE-2021-3405]....* gnu/packages/xml.scm (libebml): Update to 1.4.2. Léo Le Bouter
2021-03-03gnu: jasper: Update to 2.0.25 [fixes CVE-2021-26926]....* gnu/packages/image.scm (jasper): Update to 2.0.25. Léo Le Bouter
2021-03-03gnu: python-pillow: Update to 8.1.1 [security fixes]....* gnu/packages/python-xyz.scm (python-pillow): Update to 8.1.1. Léo Le Bouter
2021-03-03gnu: certbot, python-acme: Update to 1.12.0....* gnu/packages/tls.scm (python-acme): Update to 1.12.0. (certbot): Update to 1.12.0. [arguments]: Replace the 'build-documentation' phase. Leo Famulari
2021-03-03gnu: ocaml-4.07: Bootstrap....* gnu/packages/ocaml.scm (ocaml-4.07): Implement bootstrap via camlboot. Julien Lepiller
2021-03-03gnu: Add camlboot....* gnu/packages/ocaml.scm (camlboot): New variable. Julien Lepiller
2021-03-03gnu: emacs-posframe: Update to 0.8.7....* gnu/packages/emacs-xyz.scm (emacs-posframe): Update to 0.8.7. Nicolas Goaziou
2021-03-03services: shepherd: Make 'assert-valid-graph' public....* gnu/services/shepherd.scm (assert-valid-graph): Make public. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Andrew Tropin
2021-03-03gexp: #:references-graphs refers to non-native derivations....Fixes a regression introduced in c6d6aee6659acb293eb33f498fdac3b47a19a48, where #:reference-graphs would end up referring to native inputs. This would notably break the compilation of systems using a childhurd, because they would attempt to build the 'hurd' package natively. * guix/gexp.scm (lower-reference-graphs)[tuple->gexp-input]: Honor TARGET. * tests/gexp.scm ("gexp->derivation #:references-graphs cross-compilation"): New test. Ludovic Courtès
2021-03-03gnu: sbcl-slynk: Update to 20210224....* gnu/packages/lisp-xyz.scm (sbcl-slynk): Update to 20210224. Pierre Neidhardt
2021-03-03gnu: emacs-sly: Update to 20210224....* gnu/packages/emacs-xyz.scm (emacs-sly): Update to 20210224. Pierre Neidhardt
2021-03-03gnu: Add cl-tooter....* gnu/packages/lisp-xyz.scm (cl-tooter, ecl-tooter, sbcl-tooter): New variables. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> cage
2021-03-03gnu: infernal: Update to 1.1.4....* gnu/packages/bioinformatics.scm (infernal): Update to 1.1.4. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Tim Howes
2021-03-03gnu: hmmer: Update to 3.3.2....* gnu/packages/bioinformatics.scm (hmmer): Update to 3.3.2. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Tim Howes
2021-03-03gnu: bpytop: Update to 1.0.63....* gnu/packages/admin.scm (bpytop): Update to 1.0.63. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Michael Rohleder
2021-03-03gnu: Add cl-html-diff....* gnu/packages/lisp-xyz.scm (cl-html-diff, ecl-cl-html-diff, sbcl-cl-html-diff): New variables. Signed-off-by: Pierre Neidhardt <mail@ambrevar.xyz> André Alexandre Gomes
2021-03-03gnu: Add cl-difflib....* gnu/packages/lisp-xyz.scm (cl-difflib, ecl-cl-difflib, sbcl-cl-difflib): New variables. Signed-off-by: Pierre Neidhardt <mail@ambrevar.xyz> André Alexandre Gomes
2021-03-03gnu: sbcl-file-attributes: Update to 20210302....* gnu/packages/lisp-xyz.scm (sbcl-file-attributes): Update to 20210302. Pierre Neidhardt
2021-03-03gnu: openssh: Update to 8.5p1....* gnu/packages/patches/openssh-fix-ssh-copy-id.patch: Remove patch. * gnu/local.mk (dist_patch_DATA): Also unregister it. * gnu/packages/ssh.scm (openssh): Update to 8.5p1. Léo Le Bouter
2021-03-03gnu: osip: Update to 5.2.0....* gnu/packages/telephony.scm (osip): Update to 5.2.0. Léo Le Bouter
2021-03-02openpgp: Remove now unnecessary procedure....* guix/openpgp.scm (hash-algorithm-name): Remove. This procedure has been provided by Guile-Gcrypt since 0.3.0. Ludovic Courtès
2021-03-02gnu: usync: Patch shebang....* gnu/packages/sync.scm (usync)[propagated-inputs]: Move SCSH to... [inputs]: ... here. New field. [arguments]: Add #:phases. Ludovic Courtès
2021-03-02gnu: Add usync....* gnu/packages/sync.scm (usync): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Stefan Reichör
2021-03-02gnu: ocaml-llvm: Move to (gnu packages llvm)....Commit 8f710cc598fb675d267f49a82cffc197f03ad52c introduced a circular dependency between ocaml.scm and llvm.scm by referring to 'llvm' from the top level of ocaml.scm. This fixes it. * gnu/packages/ocaml.scm (make-ocaml-llvm, ocaml-llvm) (ocaml-llvm-9, ocaml-llvm-10, ocaml-llvm-11): Move to... * gnu/packages/llvm.scm: ... here. Ludovic Courtès
2021-03-02gnu: stgit: Update to 1.0....* gnu/packages/version-control.scm (stgit): Update to 1.0. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Stefan Reichör
2021-03-02gnu: Add python-jinja2-cli....* gnu/packages/python-xyz.scm (python-jinja2-cli): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Ellis Kenyő
2021-03-02gnu: Add pcg-cpp....* gnu/packages/cpp.scm (pcg-cpp): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Greg Hogan
2021-03-02gnu: r-haven: Unvendor readstat....* gnu/packages/cran.scm (r-haven) [snippet]: Remove bundled readstat. [arguments]: Patch Makevars to use system readstat. [inputs]: Replace zlib with readstat. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Lars-Dominik Braun
2021-03-02gnu: Add readstat....* gnu/packages/statistics.scm (readstat): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Lars-Dominik Braun
2021-03-02gnu: Python 2: Fix CVE-2021-3177....* gnu/packages/patches/python-2.7-CVE-2021-3177.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/python.scm (python-2.7)[replacement]: New field. (python-2.7/fixed): New variable. Leo Famulari
2021-03-02gnu: python-matplotlib: Fix running under Wayland with GTK3....* gnu/packages/python-xyz.scm (python-matplotlib)[source]: Add patch. * gnu/packages/patches/python-matplotlib-run-under-wayland-gtk3.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Tobias Geerinckx-Rice
2021-03-02gnu: pitivi: Update to 2021.01.0....* gnu/packages/video.scm (pitivi): Update to 2021.01.0. Tobias Geerinckx-Rice
2021-03-02gnu: pitivi: Build from git source....* gnu/packages/video.scm (pitivi)[source]: Use GIT-FETCH and GIT-FILE-NAME. Tobias Geerinckx-Rice
2021-03-02gnu: bat: Update to 0.18.0....* gnu/packages/rust-apps.scm (bat): Update to 0.18.0. Nicolas Goaziou
2021-03-02gnu: Add rust-bat-0.17....* gnu/packages/crates-io.scm (rust-bat-0.17): New variable. * gnu/packages/shells.scm (rust-nu-plugin-textview-0.27)[arguments]: Use rust-bat-0.17 instead of bat as Cargo input. Nicolas Goaziou
2021-03-02gnu: Add rust-bugreport-0.3....* gnu/packages/crates-io.scm (rust-bugreport-0.3): New variable. Nicolas Goaziou
2021-03-02gnu: Add rust-snailquote-0.3....* gnu/packages/crates-io.scm (rust-snailquote-0.3): New variable. Nicolas Goaziou
2021-03-02gnu: Add rust-unicode-categories-0.1....* gnu/packages/crates-io.scm (rust-unicode-categories-0.1): New variable. Nicolas Goaziou
2021-03-02gnu: Add rust-sys-info-0.7....* gnu/packages/crates-io.scm (rust-sys-info-0.7): New variable. Nicolas Goaziou
2021-03-02gnu: Add rust-clircle-0.3....* gnu/packages/crates-io.scm (rust-clircle-0.3): New variable. Nicolas Goaziou
2021-03-02gnu: rust-syntect-4: Update to 4.5.0....* gnu/packages/crates-io.scm (rust-syntect-4): Update to 4.5.0. Nicolas Goaziou
2021-03-02gnu: rust-assert-cmd-1: Update to 1.0.3....* gnu/packages/crates-io.scm (rust-assert-cmd-1): Update to 1.0.3. [arguments]: Add rust-bstr Cargo input. Nicolas Goaziou
2021-03-02gnu: rust-bstr-0.2: Update to 0.2.15....* gnu/packages/crates-io.scm (rust-bstr-0.2): Update to 0.2.15. Nicolas Goaziou
2021-03-02gnu: rust-predicates-1: Update to 1.0.7....* gnu/packages/crates-io.scm (rust-predicates-1): Update to 1.0.7. Nicolas Goaziou
2021-03-02gnu: kallisto: Update to 0.46.2....* gnu/packages/bioinformatics.scm (kallisto): Update to 0.46.2. [source]: Remove bundled htslib sources. Ricardo Wurmus
2021-03-02gnu: kallisto: Use older htslib....* gnu/packages/bioinformatics.scm (kallisto)[inputs]: Use htslib-1.9 instead of the latest. Ricardo Wurmus