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2020-01-27gnu: r-idpmisc: Update to 1.1.20.Ricardo Wurmus
* gnu/packages/cran.scm (r-idpmisc): Update to 1.1.20.
2020-01-27gnu: r-rngwell: Update to 0.10-6.Ricardo Wurmus
* gnu/packages/cran.scm (r-rngwell): Update to 0.10-6.
2020-01-27gnu: r-bio3d: Update to 2.4-1.Ricardo Wurmus
* gnu/packages/cran.scm (r-bio3d): Update to 2.4-1.
2020-01-27gnu: r-parameters: Update to 0.4.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-parameters): Update to 0.4.1.
2020-01-27gnu: r-leiden: Update to 0.3.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-leiden): Update to 0.3.2.
2020-01-27gnu: r-rhpcblasctl: Update to 0.20-17.Ricardo Wurmus
* gnu/packages/cran.scm (r-rhpcblasctl): Update to 0.20-17.
2020-01-27gnu: r-threejs: Update to 0.3.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-threejs): Update to 0.3.3. [native-inputs]: Use jquery 1.12.4 and threejs version r111. [arguments]: Adjust.
2020-01-27gnu: r-farver: Update to 2.0.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-farver): Update to 2.0.3.
2020-01-27gnu: r-adegenet: Update to 2.1.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-adegenet): Update to 2.1.2.
2020-01-27gnu: r-cobs: Update to 1.3-4.Ricardo Wurmus
* gnu/packages/cran.scm (r-cobs): Update to 1.3-4.
2020-01-27gnu: r-dorng: Update to 1.8.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-dorng): Update to 1.8.2. [propagated-inputs]: Remove r-pkgmaker.
2020-01-27gnu: r-future: Update to 1.16.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-future): Update to 1.16.0.
2020-01-27gnu: r-rmpfr: Update to 0.8-1.Ricardo Wurmus
* gnu/packages/cran.scm (r-rmpfr): Update to 0.8-1. [inputs]: Add gmp. [native-inputs]: Add pkg-config.
2020-01-27gnu: r-gmp: Update to 0.5-13.6.Ricardo Wurmus
* gnu/packages/cran.scm (r-gmp): Update to 0.5-13.6.
2020-01-27gnu: r-afex: Update to 0.26-0.Ricardo Wurmus
* gnu/packages/cran.scm (r-afex): Update to 0.26-0.
2020-01-27gnu: r-gh: Update to 1.1.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-gh): Update to 1.1.0. [propagated-inputs]: Add r-cli.
2020-01-27gnu: r-sjplot: Update to 2.8.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-sjplot): Update to 2.8.2. [propagated-inputs]: Remove r-ggrepel, r-glmmtmb, r-lme4, r-magrittr, r-modelr, and r-psych.
2020-01-27gnu: r-effectsize: Update to 0.1.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-effectsize): Update to 0.1.1.
2020-01-27gnu: r-performance: Update to 0.4.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-performance): Update to 0.4.3.
2020-01-27gnu: r-bayestestr: Update to 0.5.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-bayestestr): Update to 0.5.1.
2020-01-27gnu: r-sjstats: Update to 0.17.8.Ricardo Wurmus
* gnu/packages/cran.scm (r-sjstats): Update to 0.17.8. [propagated-inputs]: Add r-effectsize.
2020-01-27gnu: r-survey: Update to 3.37.Ricardo Wurmus
* gnu/packages/cran.scm (r-survey): Update to 3.37.
2020-01-27gnu: r-magick: Update to 2.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-magick): Update to 2.3.
2020-01-27gnu: r-sjlabelled: Update to 1.1.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-sjlabelled): Update to 1.1.2. [propagated-inputs]: Remove r-magrittr, r-purrr, r-rlang, and r-tidyselect.
2020-01-27gnu: r-factominer: Update to 2.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-factominer): Update to 2.1.
2020-01-27gnu: r-leaps: Update to 3.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-leaps): Update to 3.1.
2020-01-27gnu: r-vctrs: Update to 0.2.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-vctrs): Update to 0.2.2. [propagated-inputs]: Remove r-backports and r-zeallot.
2020-01-27gnu: r-tsp: Update to 1.1-8.Ricardo Wurmus
* gnu/packages/cran.scm (r-tsp): Update to 1.1-8.
2020-01-27gnu: r-xts: Update to 0.12-0.Ricardo Wurmus
* gnu/packages/cran.scm (r-xts): Update to 0.12-0.
2020-01-27gnu: r-broom: Update to 0.5.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-broom): Update to 0.5.4.
2020-01-27gnu: r-lpsolve: Update to 5.6.15.Ricardo Wurmus
* gnu/packages/cran.scm (r-lpsolve): Update to 5.6.15.
2020-01-27gnu: r-prettyunits: Update to 1.1.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-prettyunits): Update to 1.1.1.
2020-01-27gnu: r-rgooglemaps: Update to 1.4.5.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-rgooglemaps): Update to 1.4.5.2.
2020-01-27gnu: r-callr: Update to 3.4.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-callr): Update to 3.4.1.
2020-01-27gnu: r-diversitree: Update to 0.9-13.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-diversitree): Update to 0.9-13.
2020-01-27gnu: r-metap: Update to 1.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-metap): Update to 1.3.
2020-01-27gnu: python-testpath: Remove incorrect #:imported-modules.Ludovic Courtès
Fixes <https://bugs.gnu.org/39298>. Reported by Clément Lassieur <clement@lassieur.org> and Ricardo Wurmus <rekado@elephly.net>. This pacakge would import (srfi srfi-1) from the host Guile, leading to build failures when the host Guile is 3.0. * gnu/packages/check.scm (python-testpath)[arguments]: Remove incorrect #:imported-modules.
2020-01-27gnu: emacs-org-make-toc: Update to 0.4.David Wilson
* gnu/packages/emacs-xyz.scm (emacs-org-make-toc): Update to 0.4
2020-01-27gnu: public-inbox: Enable support for background HTTP/NNTP daemons.宋文武
* gnu/packages/mail.scm (public-inbox)[inputs]: Add perl-net-server.
2020-01-27gnu: keepassxc: Update to 2.5.3.Efraim Flashner
* gnu/packages/password-utils.scm (keepassxc): Update to 2.5.3.
2020-01-27gnu: s6: Install documentation.宋文武
* gnu/packages/skarnet.scm (s6)[arguments]: Add 'install-doc' phase.
2020-01-27gnu: ocaml: Switch to ocaml 4.09 by default.Julien Lepiller
Bap and earley cannot be updated as they do not support 4.09 yet. Bap requires the janestreet packages, which cannot be upgraded as no version supports 4.09 and 4.07 at the same time. Moreover, newer versions of the janestreet packages have a different dependency graph, which will require a whole new set of packages. We cannot simply use package-with-ocaml4.07 on them. * gnu/packages/ocaml.scm (ocaml-sqlite3, ocaml-ppx-tools, ocaml-gen) (ocaml-sedlex, ocaml-pcre, ocaml-expect, ocaml-ezjsonm, ocaml-uri) (ocaml-piqilib, ocaml-piqi, ocaml-charinfo-width, ocaml-zed) (ocaml-lambda-term, ocaml-utop, ocaml-ppx-inline-test, ocaml-earley) (ocaml-merlin, ocaml-gsl, ocaml-gsl-1, ocaml-sexplib0, ocaml-parsexp) (ocaml-sexplib, ocaml-base, ocaml-stdio, ocaml-ppxlib, ocaml-ppx-compare) (ocaml-fieldslib, ocaml-variantslib, ocaml-ppx-fields-conv) (ocaml-ppx-sexp-conv, ocaml-ppx-variants-conv, ocaml-ppx-custom-printf) (ocaml-bin-prot, ocaml-ppx-hash, ocaml-ppx-enumerate, ocaml-ppx-bench) (ocaml-ppx-here, ocaml-ppx-typerep, ocaml-ppx-sexp-value) (ocaml-ppx-sexp-message, ocaml-ppx-pipebang, ocaml-ppx-optional) (ocaml-ppx-optcomp, ocaml-ppx-fail, ocaml-ppx-let, ocaml-ppx-assert) (ocaml-ppx-expect, ocaml-ppx-js-style, ocaml-ppx-typerep-conv) (ocaml-ppx-base, ocaml-ppx-bin-prot, ocaml-ppx-jane) (ocaml-splittable-random, ocaml-configurator, ocaml-spawn, ocaml-core) (ocaml-core-kernel, ocaml-odoc, ocaml-fftw3, ocaml-lacaml): Rename to ... (ocaml4.07-sqlite3, ocaml4.07-ppx-tools, ocaml4.07-gen, ocaml4.07-sedlex) (ocaml4.07-pcre, ocaml4.07-expect, ocaml4.07-ezjsonm, ocaml4.07-uri) (ocaml4.07-piqilib, ocaml4.07-piqi, ocaml4.07-charinfo-width) (ocaml4.07-zed, ocaml4.07-lambda-term, ocaml4.07-utop) (ocaml4.07-ppx-inline-test, ocaml4.07-earley, ocaml4.07-merlin) (ocaml4.07-gsl, ocaml4.07-gsl-1, ocaml4.07-sexplib0, ocaml4.07-parsexp) (ocaml4.07-sexplib, ocaml4.07-base, ocaml4.07-stdio, ocaml4.07-ppxlib) (ocaml4.07-ppx-compare, ocaml4.07-fieldslib, ocaml4.07-variantslib) (ocaml4.07-ppx-fields-conv, ocaml4.07-ppx-sexp-conv) (ocaml4.07-ppx-variants-conv, ocaml4.07-ppx-custom-printf) (ocaml4.07-bin-prot, ocaml4.07-ppx-hash, ocaml4.07-ppx-enumerate) (ocaml4.07-ppx-bench, ocaml4.07-ppx-here, ocaml4.07-ppx-typerep) (ocaml4.07-ppx-sexp-value, ocaml4.07-ppx-sexp-message) (ocaml4.07-ppx-pipebang, ocaml4.07-ppx-optional, ocaml4.07-ppx-optcomp) (ocaml4.07-ppx-fail, ocaml4.07-ppx-let, ocaml4.07-ppx-assert) (ocaml4.07-ppx-expect, ocaml4.07-ppx-js-style) (ocaml4.07-ppx-typerep-conv, ocaml4.07-ppx-base, ocaml4.07-ppx-bin-prot) (ocaml4.07-ppx-jane, ocaml4.07-splittable-random) (ocaml4.07-configurator, ocaml4.07-spawn, ocaml4.07-core) (ocaml4.07-core-kernel, ocaml4.07-odoc, ocaml4.07-fftw3) (ocaml4.07-lacaml): ... to this and use ocaml 4.07. (bap, unison): Use ocaml-4.07. * gnu/packages/bioinformatics.scm (pplacer): Use ocaml-4.07.
2020-01-27guix: ocaml: Also replace dune when relevant in package-with-explicit-ocaml.Julien Lepiller
* guix/build-system/ocaml.scm (package-with-explicit-ocaml): Take a dune argument and add it to transformed packages when relevant.
2020-01-27gnu: Add ocaml4.07-dune.Julien Lepiller
* gnu/packages/ocaml.scm (ocaml4.07-dune): New variable.
2020-01-27gnu: Add ocaml4.07-lablgtk.Julien Lepiller
* gnu/packages/ocaml.scm (ocaml4.07-lablgtk): New variable. (lablgtk)[properties]: Add variant.
2020-01-27gnu: ocambuild: Update to 0.14.0.Julien Lepiller
* gnu/packages/ocaml.scm (ocamlbuild): Update to 0.14.0. [build-system]: Use ocaml-build-system.
2020-01-26gnu: pcsxr: Wrap with GSETTINGS_SCHEMA_DIR path variable.Kei Kebreau
Without setting this path variable, gtk+ must be installed in the user's profile for pcsxr's GUI to work. * gnu/packages/emulators.scm (pcsxr)[arguments]: Add 'wrap-program' phase and return #t from 'cd-subdir' and 'fix-cdio-lookup' phases.
2020-01-27gnu: sicp: Remove unused module import.Marius Bakke
* gnu/packages/scheme.scm (sicp)[arguments]: Do not import (srfi srfi-1).
2020-01-27gnu: emacs-org-contrib: Update to 20200126.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-org-contrib): Update to 20200126.
2020-01-26gnu: emacs-org: Update to 9.3.2.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-org): Update to 9.3.2.
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