| Age | Commit message (Expand) | Author |
|---|
| 2017-03-18 | gnu: guix: Don't ignore user's GUILE_LOAD_COMPILED_PATH....* gnu/packages/package-management.scm (guix-0.12.0): Guile skips invalid .go
files since 2.0.12 so we don't need to override GUILE_LOAD_COMPILED_PATH to
prevent problems anymore.
| Taylan Ulrich Bayırlı/Kammer |
| 2017-03-18 | gnu: wine: Update to 2.4....* gnu/packages/wine.scm (wine): Update to 2.4.
| Danny Milosavljevic |
| 2017-03-18 | gnu: Add niftilib....* gnu/packages/image.scm (niftilib): New variable.
| John Darrington |
| 2017-03-18 | doc: Clarify reference....* doc/guix.texi (Invoking guix environment): Explicitly name
"guix environment".
| Hartmut Goebel |
| 2017-03-18 | doc: Fix examples....To "spawns a Guile REPL", --ad-hoc is required.
* doc/guix.texi (Invoking guix environment): Add "--ad-hoc" to
container examples.
| Hartmut Goebel |
| 2017-03-18 | bug#26152: [PATCH] gnu: limnoria: Update to 20170110....* gnu/packages/irc.scm (limnoria): Update to 20170110.
Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
| ng0 |
| 2017-03-18 | file-systems: Factorize file-system-packages....* gnu/system/linux-initrd.scm (base-initrd): Move helper-packages body to ...
* gnu/system/file-systems.scm (file-system-packages): ... here. New variable.
Also export it.
| Danny Milosavljevic |
| 2017-03-18 | gnu: rustc: Fix process test....* gnu/packages/rust.scm (rustc)[arguments]: Rename 'patch-lockfile-test
to 'patch-tests. Add another substitution.
| Danny Milosavljevic |
| 2017-03-18 | gnu: Add maxflow....* gnu/packages/maths.scm (maxflow): New variable.
| John Darrington |
| 2017-03-18 | gnu: Add itpp....* gnu/packages/maths.scm (itpp): New variable.
| John Darrington |
| 2017-03-18 | gnu: emacs-slime: Update to 2.19....* gnu/packages/emacs.scm (emacs-slime): Update to 2.19.
| Tobias Geerinckx-Rice |
| 2017-03-18 | gnu: ocaml-qtest: Update to 2.5....* gnu/packages/ocaml.scm (ocaml-qtest): Update to 2.5.
| Ben Woodcroft |
| 2017-03-18 | doc: Make "Application Setup" slightly more visible....Suggested by Arne Babenhauserheide.
* doc/guix.texi (Binary Installation): Make the "Application Setup"
reference an 8th item in the list.
| Ludovic Courtès |
| 2017-03-18 | http-client: Avoid name clash with 'open-connection-for-uri' in 2.2.0....* guix/build/download.scm (open-connection-for-uri): Add note about
same-named binding in Guile 2.2.0.
* guix/http-client.scm: Use 'guix:open-connection-for-uri' for the
procedure coming from (guix build download).
* guix/scripts/lint.scm: Likewise.
* guix/scripts/substitute.scm: Likewise.
| Ludovic Courtès |
| 2017-03-18 | build: Require Guile >= 2.0.9....* configure.ac: Bump requirement to 2.0.9.
* doc/guix.texi (Requirements): Adjust accordingly.
* README (Requirements): Likewise.
* build-aux/download.scm: Remove workaround for <http://bugs.gnu.org/13095>.
* guix/build/download.scm: Likewise.
(http-fetch)[post-2.0.7?]: Remove. Remove conditional code for not
POST-2.0.7?.
* guix/http-client.scm: Remove workaround for <http://bugs.gnu.org/13095>.
(http-fetch)[post-2.0.7?]: Remove. Remove conditional code for not
POST-2.0.7?.
* guix/serialization.scm (read-latin1-string): Remove mention of 2.0.9.
* tests/nar.scm: Use (ice-9 control).
(let/ec): Remove.
| Ludovic Courtès |
| 2017-03-18 | pack: Add '--target'....* guix/scripts/pack.scm (self-contained-tarball): Add #:target.
(docker-image): Add #:target.
[build]: Pass it to 'build-docker-image'.
(%options, show-help): Add '--target'.
(guix-pack): Pass TARGET to 'profile-derivation' and to 'build-image'.
* guix/docker.scm (build-docker-image): Add #:system parameter and honor it.
* doc/guix.texi (Invoking guix pack): Document '--target'.
(Additional Build Options): Refer to the Autoconf manual instead of the
obsolete 'configure.info' for cross-compilation.
| Ludovic Courtès |
| 2017-03-17 | profiles: Packages in a profile can be cross-compiled....* guix/profiles.scm (profile-derivation): Add #:target parameter; pass
it to 'gexp->derivation'.
* tests/profiles.scm ("profile-derivation, cross-compilation"): New test.
| Ludovic Courtès |
| 2017-03-17 | pack: Move absolute file name to <compressor>....* guix/scripts/pack.scm (<compressor>)[package]: Remove.
[command]: Document as being a gexp with an absolute file name.
(%compressors): Adjust accordingly.
(self-contained-tarball): Simplify PATH expression. Move 'string-join'
for the compressor command on the build side.
(docker-image): Simplify PATH expression.
* tests/pack.scm (%gzip-compressor): Adjust accordingly.
| Ludovic Courtès |
| 2017-03-17 | gnu: libbluray: Update to 1.0.0....* gnu/packages/video.scm (libbluray): Update to 1.0.0.
| Marius Bakke |
| 2017-03-17 | gnu: libx264: Update to 20170316-2245....* gnu/packages/video.scm (libx264): Update to 20170316-2245.
| Marius Bakke |
| 2017-03-17 | gnu: libwebp: Update to 0.6.0....* gnu/packages/image.scm (libwebp): Update to 0.6.0.
[source]: Remove patch.
* gnu/packages/patches/libwebp-CVE-2016-9085.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
| Marius Bakke |
| 2017-03-17 | gnu: ninja: Update to 1.7.2....* gnu/packages/ninja.scm (ninja): Update to 1.7.2.
[source]: Remove patch.
* gnu/packages/patches/ninja-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
| Marius Bakke |
| 2017-03-17 | gnu: btrfs-progs: Use @dfn in description....* gnu/packages/linux.scm (btrfs-progs)[description]: Use @dfn.
| Tobias Geerinckx-Rice |
| 2017-03-17 | gnu: btrfs-progs: Update to 4.10.1....* gnu/packages/linux.scm (btrfs-progs): Update to 4.10.1.
| Tobias Geerinckx-Rice |
| 2017-03-17 | build/cargo-build-system: Make cargo-build-system install working packages....* guix/build/cargo-build-system.scm (configure): Remove proprietary
dependencies. Add rust dependencies and configure Cargo to find them.
(build): Also build libraries, not just applications.
(file-sha256): New variable.
(generate-checksums): New variable. Export it.
(touch): New variable.
(install): Generate checksums so Cargo accepts the package.
| Danny Milosavljevic |
| 2017-03-17 | build-system/cargo (cargo-build): Add cargo-build-flags, remove configure-flags....* guix/build-system/cargo.scm (cargo-build): Add cargo-build-flags,
remove configure-flags.
| Danny Milosavljevic |
| 2017-03-17 | gnu: cargo: Use upstream cargo....* gnu/packages/rust.scm (cargo): Use upstream cargo.
| Danny Milosavljevic |
| 2017-03-17 | gnu: rust: Update to 1.15.0....* gnu/packages/rust.scm (%rust-bootstrap-binaries-version): Update to 1.14.0.
(%rust-bootstrap-binaries): Update to 1.14.0.
(rustc): Update to 1.15.0.
[arguments]: Pass "--disable-rustbuild" to configure.
| Danny Milosavljevic |
| 2017-03-17 | gnu: libpng-apng: Remove unnecessary call to libtool....* gnu/packages/image.scm (libpng-apng)[phases]: Remove it.
| Kei Kebreau |
| 2017-03-17 | gnu: Add libpng-apng....* gnu/packages/image.scm (libpng-apng): New variable.
Co-authored-by: Kei Kebreau <kei@openmailbox.org>
| ng0 |
| 2017-03-17 | gnu: Add ocaml-mcl....* gnu/packages/machine-learning.scm (ocaml-mcl): New variable.
| Ben Woodcroft |
| 2017-03-17 | gnu: Add ocaml-gsl....* gnu/packages/maths.scm (ocaml-gsl): New variable.
| Ben Woodcroft |
| 2017-03-17 | gnu: Add ocaml-csv....* gnu/packages/ocaml.scm (ocaml-csv): New variable.
| Ben Woodcroft |
| 2017-03-17 | gnu: Add ocaml-sqlite3....* gnu/packages/ocaml.scm (ocaml-sqlite3): New variable.
| Ben Woodcroft |
| 2017-03-17 | gnu: snakemake: Update to 3.11.2....* gnu/packages/python.scm (snakemake): Update to 3.11.2.
| Ricardo Wurmus |
| 2017-03-17 | gnu: r-minimal: Fix remaining reproducibility problems....Fixes <https://bugs.gnu.org/25598>.
* gnu/packages/statistics.scm (r-minimal)[arguments]: Add remaining
reproducibility fixes to "build-reproducibly" phase.
| Ricardo Wurmus |
| 2017-03-17 | gnu: r: Rename to r-minimal....* gnu/packages/statistics.scm (r): Rename to...
(r-minimal): ...this new variable.
(r-with-recommended-packages): Rename to...
(r): ...this.
* guix/build-system/r.scm (default-r): Reference r-minimal.
* gnu/packages/emacs.scm (emacs-ess)[inputs],
gnu/packages/machine-learning.scm (shogun)[inputs],
gnu/packages/python.scm (python-rpy2)[inputs],
gnu/packages/bioinformatics.scm (ribotaper)[inputs],
(couger)[propagated-inputs],
(roary)[inputs],
(rsem)[inputs],
(rcas-web)[inputs]: Change "r" to "r-minimal".
| Ricardo Wurmus |
| 2017-03-17 | gnu: Add r-with-recommended-packages....* gnu/packages/statistics.scm (r-with-recommended-packages): New variable.
| Ricardo Wurmus |
| 2017-03-17 | gnu: r: Do not build recommended packages....* gnu/packages/statistics.scm (r)[arguments]: Rename phase
"build-recommended-packages-reproducibly" to "build-reproducibly"; add
configure flag "--without-recommended-packages".
* guix/import/cran.scm (default-r-packages): Remove recommended packages.
* gnu/packages/python.scm (python-rpy2)[inputs]: Add r-survival.
* gnu/packages/bioinformatics.scm (r-ape)[propagated-inputs]: Add r-lattice
and r-nlme.
(r-vegan)[propagated-inputs]: Add r-mass.
(r-genefilter)[propagated-inputs]: Add r-survival.
(r-grohmm)[propagated-inputs]: Add r-mass.
(r-bioccheck)[propagated-inputs]: Add r-codetools.
(r-summarizedexperiment)[propagated-inputs]: Add r-matrix.
(r-topgo)[propagated-inputs]: Add r-lattice.
(r-sva)[propagated-inputs]: Add r-mgcv.
(r-raremetals2)[propagated-inputs]: Add r-mass.
(r-vsn)[propagated-inputs]: Add r-lattice.
(r-pcamethods)[propagated-inputs]: Add r-mass.
* gnu/packages/bioinformatics.scm (r-ggplot2)[propagated-inputs]: Add r-mass.
(r-locfit)[propagated-inputs]: Add r-lattice.
(r-coda)[propagated-inputs]: Add r-lattice.
(r-irlba)[propagated-inputs]: Add r-matrix.
(r-glmnet)[propagated-inputs]: Add r-matrix.
(r-e1071)[propagated-inputs]: Add r-class.
(r-spams)[propagated-inputs]: Add r-lattice and r-matrix.
(r-hmisc)[propagated-inputs]: Add r-cluster, r-foreign, r-lattice, r-nnet, and
r-rpart.
(r-zoo)[propagated-inputs]: Add r-lattice.
(r-mixtools)[propagated-inputs]: Add r-boot and r-mass.
(r-flexmix)[propagated-inputs]: Add r-lattice and r-nnet.
(r-prabclus)[propagated-inputs]: Add r-mass.
(r-fpc)[propagated-inputs]: Add r-class, r-cluster, and r-mass.
(r-rcppeigen)[propagated-inputs]: Add r-matrix.
(r-matrixmodels)[propagated-inputs]: Add r-matrix.
(r-lme4)[propagated-inputs]: Add r-mass and r-nlme.
(r-pbkrtest)[propagated-inputs]: Add r-mass and r-matrix.
(r-car)[propagated-inputs]: Add r-mass, r-mgcv, and r-nnet.
(r-tclust)[propagated-inputs]: Add r-cluster.
| Ricardo Wurmus |
| 2017-03-17 | gnu: r-survival: Move to set of recommended R packages....* gnu/packages/statistics.scm (r-survival): Move up to set of recommended R
packages.
| Ricardo Wurmus |
| 2017-03-17 | gnu: Add r-spatial....* gnu/packages/statistics.scm (r-spatial): New variable.
| Ricardo Wurmus |
| 2017-03-17 | gnu: r-rpart: Move to the set of recommended packages....* gnu/packages/statistics.scm (r-rpart): Move up to the set of recommended
packages.
| Ricardo Wurmus |
| 2017-03-17 | gnu: r-nnet: Move to set of recommended R packages....* gnu/packages/machine-learning.scm (r-nnet): Move from here...
* gnu/packages/statistics.scm (r-nnet): ...to here because the other
recommended R packages are here.
| Ricardo Wurmus |
| 2017-03-17 | gnu: r-mgcv: Move to set of recommended R packages....* gnu/packages/statistics.scm (r-mgcv): Move up to set of recommended R
packages.
| Ricardo Wurmus |
| 2017-03-17 | gnu: Add r-nlme....* gnu/packages/statistics.scm (r-nlme): New variable.
| Ricardo Wurmus |
| 2017-03-17 | gnu: r-matrix: Move to set of recommended R packages....* gnu/packages/statistics.scm (r-matrix): Move to set of recommended R
packages.
| Ricardo Wurmus |
| 2017-03-17 | gnu: r-lattice: Move to other recommended R packages....* gnu/packages/statistics.scm (r-lattice): Move to the set of recommended R
packages.
| Ricardo Wurmus |
| 2017-03-17 | gnu: Add r-kernsmooth....* gnu/packages/statistics.scm (r-kernsmooth): New variable.
| Ricardo Wurmus |
| 2017-03-17 | gnu: Add r-foreign....* gnu/packages/statistics.scm (r-foreign): New variable.
| Ricardo Wurmus |
| 2017-03-17 | gnu: Add r-codetools....* gnu/packages/statistics.scm (r-codetools): New variable.
| Ricardo Wurmus |
