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2020-06-28gnu: Add rust-subtle-2.Efraim Flashner
* gnu/packages/crates-io.scm (rust-subtle-2): New variable. (rust-subtle-1.0): Inherit from rust-subtle-2.
2020-06-28gnu: rust-block-padding-0.1: Don't skip build.Efraim Flashner
* gnu/packages/crates-io.scm (rust-block-padding-0.1)[arguments]: Don't skip build.
2020-06-28gnu: Add rust-block-padding-0.2.Efraim Flashner
* gnu/packages/crates-io.scm (rust-block-padding-0.2): New variable. (rust-block-padding-0.1): Inherit from rust-block-padding-0.2.
2020-06-28gnu: Add rust-cpuid-bool-0.1.Efraim Flashner
* gnu/packages/crates-io.scm (rust-cpuid-bool-0.1): New variable.
2020-06-28gnu: Add rust-opaque-debug-0.3.Efraim Flashner
* gnu/packages/crates-io.scm (rust-opaque-debug-0.3): New variable. (rust-opaque-debug-0.2): Inherit from rust-opaque-debug-0.3.
2020-06-28.gitignore: Ignore 'etc/committer.scm'.Brice Waegeneire
* .gitignore: Add '/etc/committer.scm'.
2020-06-28doc: Add progress display in 'dd' command lines.Brice Waegeneire
* doc/guix.texi (System Installation): Adjust 'dd' command line to display progress … (System Configuration): … same here.
2020-06-28doc: cookbook: Update entry about getting substitutes through Tor.André Batista
* doc/guix-cookbook.texi (Getting substitutes from Tor): Update section warning to mention the use of torsocks when pulling.
2020-06-28services: Add rshiny service.Efraim Flashner
* gnu/services/science.scm: New file. (<rshiny-configuration>): New record. (rshiny-shepherd-service-type): New variable. * doc/guix.texi (Miscellaneous Services): Document it. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2020-06-28gnu: emacs-nov-el: Update to 0.3.1.Simon South
* gnu/packages/emacs-xyz.scm (emacs-nov-el): Update to 0.3.1. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-06-28gnu: emacs-nov-el: Use version tag instead of commit.Simon South
* gnu/packages/emacs-xyz.scm (emacs-nov-el): Remove let binding and associated comment; correct indentation. [source]: Use version tag as commit identifier now that upstream has restored this information. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-06-28gnu: r-qtl2: Update synopsis, description.Efraim Flashner
* gnu/packages/bioinformatics.scm (r-qtl2)[synopsis]: Use upstream's synopsis. [description]: Same.
2020-06-28gnu: r-qtl2: Update to 0.22-8.Efraim Flashner
* gnu/packages/bioinformatics.scm (r-qtl2): Update to 0.22-8. [source]: Download from cran.
2020-06-28gnu: Add rust-scrypt-0.2.Efraim Flashner
* gnu/packages/crates-io.scm (rust-scrypt-0.2): New variable.
2020-06-28gnu: Add rust-pbkdf2-0.3.Efraim Flashner
* gnu/packages/crates-io.scm (rust-pbkdf2-0.3): New variable.
2020-06-28gnu: Add rust-hmac-0.7.Efraim Flashner
* gnu/packages/crates-io.scm (rust-hmac-0.7): New variable.
2020-06-28gnu: Add rust-md-5-0.8.Efraim Flashner
* gnu/packages/crates-io.scm (rust-md-5-0.8): New variable.
2020-06-28gnu: Add rust-md5-asm-0.4.Efraim Flashner
* gnu/packages/crates-io.scm (rust-md5-asm-0.4): New variable.
2020-06-27gnu: emacs-idris-mode: Update to 1.0.Eric Bavier
* gnu/packages/emacs-xyz.scm (emacs-idris-mode): Update to 1.0. [description]: Mention compatibility with Idris 1.
2020-06-28gnu: r-fpc: Update to 2.2-7.Ricardo Wurmus
* gnu/packages/statistics.scm (r-fpc): Update to 2.2-7.
2020-06-28gnu: r-openssl: Update to 1.4.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-openssl): Update to 1.4.2. [native-inputs]: Add r-knitr.
2020-06-28gnu: r-roxygen2: Update to 7.1.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-roxygen2): Update to 7.1.1. [native-inputs]: Add r-knitr.
2020-06-28gnu: r-directlabels: Update to 2020.6.17.Ricardo Wurmus
* gnu/packages/cran.scm (r-directlabels): Update to 2020.6.17. [native-inputs]: Add r-knitr.
2020-06-28gnu: r-rgdal: Update to 1.5-12.Ricardo Wurmus
* gnu/packages/cran.scm (r-rgdal): Update to 1.5-12.
2020-06-28gnu: r-flexdashboard: Update to 0.5.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-flexdashboard): Update to 0.5.2. [source]: Delete minified JavaScript files in a snippet.
2020-06-28gnu: r-rcppparallel: Update to 5.0.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-rcppparallel): Update to 5.0.2.
2020-06-28gnu: r-emmeans: Update to 1.4.8.Ricardo Wurmus
* gnu/packages/cran.scm (r-emmeans): Update to 1.4.8.
2020-06-28gnu: r-raster: Update to 3.3-7.Ricardo Wurmus
* gnu/packages/cran.scm (r-raster): Update to 3.3-7.
2020-06-28gnu: r-sjlabelled: Update to 1.1.6.Ricardo Wurmus
* gnu/packages/cran.scm (r-sjlabelled): Update to 1.1.6.
2020-06-28gnu: r-officer: Update to 0.3.12.Ricardo Wurmus
* gnu/packages/cran.scm (r-officer): Update to 0.3.12.
2020-06-28gnu: r-ggpubr: Update to 0.4.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggpubr): Update to 0.4.0.
2020-06-28gnu: r-renv: Update to 0.11.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-renv): Update to 0.11.0.
2020-06-28gnu: r-jsonlite: Update to 1.7.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-jsonlite): Update to 1.7.0. [native-inputs]: Add r-knitr.
2020-06-28gnu: r-scater: Update to 1.16.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-scater): Update to 1.16.2.
2020-06-28gnu: r-biocviews: Update to 1.56.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.56.1.
2020-06-28gnu: r-dexseq: Update to 1.34.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.34.1.
2020-06-27gnu: dropbear: Update to 2020.80 [fix for CVE-2018-20685].Tobias Geerinckx-Rice
* gnu/packages/ssh.scm (dropbear): Update to 2020.80.
2020-06-27gnu: lxqt: Update to 0.15.0.André Batista
* gnu/packages/lxqt.scm (libstatgrab): Update to 0.92. (lxqt-build-tools): Update to 0.7.0. (libqtxdg): Update to 3.5.0. (liblxqt): Update to 0.15.1. (libsysstat): Update to 0.4.3. (lxqt-about): Update to 0.15.0. (lxqt-admin): Update to 0.15.0. (lxqt-config): Update to 0.15.0. (lxqt-globalkeys): Update to 0.15.0. (lxqt-notificationd): Update to 0.15.0. (lxqt-openssh-askpass): Update to 0.15.0. (lxqt-panel): Update to 0.15.1. (lxqt-policykit): Update to 0.15.0. (lxqt-powermanagement): Update to 0.15.0. (lxqt-qtplugin): Update to 0.15.1. (lxqt-runner): Update to 0.15.0. (lxqt-session): Update to 0.15.0. (lxqt-sudo): Update to 0.15.0. (lxqt-themes): Update to 0.15.0. (libfm-qt): Update to 0.15.1. (pcmanfm-qt): Update to 0.15.1. (compton-conf): Update to 0.15.0. (lximage-qt): Update to 0.15.0. (obconf-qt): Update to 0.15.0. (pavucontrol-qt): Update to 0.15.0. (qps): Update to 2.1.0. (qps)[inputs]: Add kwindowsystem, liblxqt and libqtxdg. (qtermwidget): Update to 0.15.0. (qterminal): Update to 0.15.0. (screengrab): Update to 2.0.1. (lxqt-archiver): Update to 0.2.0. (lxqt-archiver)[origin]: Use tarball release. (lxqt-connman-applet): Update to 0.15.0. (lxqt-connman-applet)[arguments]: Add new patch phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-06-27gnu: libtiff: Use HTTPS.Timotej Lazar
* gnu/packages/image.scm (libtiff)[source]: Use HTTPS. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-06-27packages: Recognize SHA3 and BLAKE2s for 'content-hash'.Ludovic Courtès
* guix/packages.scm (build-content-hash): Add 'sha3-256', 'sha3-512', and 'blake2s-256'. * tests/packages.scm ("package-source-derivation, origin, sha3-512"): New test.
2020-06-27daemon: Recognize SHA3 and BLAKE2s.Ludovic Courtès
* nix/libutil/hash.hh (HashType): Add htSHA3_256, htSHA3_512, and htBLAKE2s_256. * nix/libutil/hash.cc (parseHashType, printHashType): Recognize them. * tests/store.scm ("add-to-store"): Test these algorithms.
2020-06-27daemon: Remove OpenSSL hash compatibility wrappers.Ludovic Courtès
* nix/libutil/hash.cc (struct Ctx): Copy from gcrypt-hash.hh. (start, update, finish): Use gcrypt functions directly instead of OpenSSL-like wrappers. * nix/libutil/gcrypt-hash.cc, nix/libutil/gcrypt-hash.hh, nix/libutil/md5.h, nix/libutil/sha1.h, nix/libutil/sha256.h, nix/libutil/sha512.h: Remove. * nix/local.mk (libutil_a_SOURCES, libutil_headers): Adjust accordingly.
2020-06-27daemon: Map directly to gcrypt hash functions.Ludovic Courtès
* nix/libutil/hash.hh (HashType): Map directly to GCRY_MD_ values. (md5HashSize, sha1HashSize, sha256HashSize, sha512HashSize): Remove. * nix/libutil/hash.cc (Hash::Hash): Use 'gcry_md_get_algo_dlen'.
2020-06-27bash completion: Complete 'guix environment' properly.Ludovic Courtès
* etc/completion/bash/guix (_guix_complete): Add case for "guix environment".
2020-06-27gnu: Add autofs.Tobias Geerinckx-Rice
* gnu/packages/file-systems.scm (autofs): New public variable. Co-authored-by: Oleg Pykhalov <go.wigust@gmail.com>
2020-06-27gnu: python-setproctitle: Fix indentation.Tobias Geerinckx-Rice
* gnu/packages/python-xyz.scm (python-setproctitle): Re-indent.
2020-06-27gnu: python-setproctitle: Fix build.Tobias Geerinckx-Rice
* gnu/packages/python-xyz.scm (python-setproctitle)[arguments]: Add ‘--embed’ to $PYCONFIG.
2020-06-27gnu: Add r-shapforxgboost.Peter Lo
* gnu/packages/cran.scm (r-shapforxgboost): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2020-06-27gnu: Add emacs-browse-kill-ring.Ricardo Wurmus
* gnu/packages/emacs-xyz.scm (emacs-browse-kill-ring): New variable.
2020-06-27gnu: x265: Update to 3.4.Marius Bakke
* gnu/packages/patches/x265-arm-flags.patch: Update patch. * gnu/packages/video.scm (x265): Update to 3.4. [arguments]: Remove obsolete substitution. Disable the newly-added assembly optimizations on AArch64, as they are not implemented for all targets we build.
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