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2020-08-13build-system/haskell: Add 'extra-directories' keyword.•••See <https://bugs.gnu.org/39309>. * guix/build-system/haskell.scm (lower): Include the transitive propagated inputs of 'extra-directories' inputs. (haskell-build): Add the 'extra-directories' keyword and pass it through to the builder. * guix/build/haskell-build-system.scm (configure): Use it to select which inputs get passed via 'extra-include-dirs' and 'extra-lib-dirs' to Cabal. * gnu/packages/haskell-xyz.scm (ghc-alsa-core, ghc-hmatrix, ghc-hmatrix-gsl, ghc-hslua, ghc-iwlib, ghc-libyaml, ghc-ncurses, ghc-openglraw, ghc-x11, ghc-x11-xft, ghc-zlib): Set 'extra-directories'. * gnu/packages/haskell-crypto.scm (ghc-digest, ghc-hsopenssl): Likewise. Timothy Sample
2020-08-12haskell-build-system: register: Remove references to the doc output.•••* guix/build/haskell-build-system.scm (register): Strip references to the doc output from the generated package config files; move the haddock files from the "doc" output to the "lib" output. Ricardo Wurmus
2020-08-12haskell-build-system: register: Respect lib output.•••* guix/build/haskell-build-system.scm (register): Use lib output if it exists. Ricardo Wurmus
2020-08-12build-system/haskell: Add default output "static".•••* guix/build-system/haskell.scm (lower): Add OUTPUTS keyword and add the "static" output in the common case. (haskell-build): Set the default value for the OUTPUTS keyword to include the "static" output. * guix/build/haskell-build-system.scm (install): Move static libraries to the "static" output if it exists. Ricardo Wurmus
2020-08-12build-system/haskell: Configure to link with shared libraries.•••* guix/build/haskell-build-system.scm (configure): Add configure flags to build shared libraries by default, to generate position independent code, and to set the RUNPATH. Ricardo Wurmus
2020-08-12build-system/haskell: Refactor configure step.•••* guix/build/haskell-build-system.scm (configure): Replace append with quasiquotes and splicing. Ricardo Wurmus
2020-08-12build-system/haskell: Support parallel builds.•••* guix/build-system/haskell.scm (haskell-build): Add keyword PARALLEL-BUILD? and pass it on to the builder. * guix/build/haskell-build-system.scm (build): Accept keyword PARALLEL-BUILD? and pass the number of parallel jobs to GHC. Ricardo Wurmus
2020-08-12gnu: Add ghc-8.8.•••* gnu/packages/haskell.scm (ghc-8.8): New variable. Timothy Sample
2020-08-12gnu: r-car: Update to 3.0-9.•••* gnu/packages/statistics.scm (r-car): Update to 3.0-9. Ricardo Wurmus
2020-08-12gnu: r-fit-models: Update to 0.64.•••* gnu/packages/statistics.scm (r-fit-models): Update to 0.64. Ricardo Wurmus
2020-08-12gnu: r-rrcov: Update to 1.5-5.•••* gnu/packages/statistics.scm (r-rrcov): Update to 1.5-5. Ricardo Wurmus
2020-08-12gnu: r-hmisc: Update to 4.4-1.•••* gnu/packages/statistics.scm (r-hmisc): Update to 4.4-1. [propagated-inputs]: Remove r-acepack. Ricardo Wurmus
2020-08-12gnu: r-tidyr: Update to 1.1.1.•••* gnu/packages/statistics.scm (r-tidyr): Update to 1.1.1. [propagated-inputs]: Remove r-rcpp and r-stringi; add r-cpp11. Ricardo Wurmus
2020-08-12gnu: r-dt: Update to 0.15.•••* gnu/packages/statistics.scm (r-dt): Update to 0.15. Ricardo Wurmus
2020-08-12gnu: r-xml: Update to 3.99-0.5.•••* gnu/packages/statistics.scm (r-xml): Update to 3.99-0.5. Ricardo Wurmus
2020-08-12gnu: r-rcpparmadillo: Update to 0.9.900.2.0.•••* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.9.900.2.0. Ricardo Wurmus
2020-08-12gnu: r-devtools: Update to 2.3.1.•••* gnu/packages/statistics.scm (r-devtools): Update to 2.3.1. [propagated-inputs]: Remove r-crayon, r-digest, r-glue, and r-git2r. Ricardo Wurmus
2020-08-12gnu: r-httr: Update to 1.4.2.•••* gnu/packages/statistics.scm (r-httr): Update to 1.4.2. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-08-12gnu: r-data-table: Update to 1.13.0.•••* gnu/packages/statistics.scm (r-data-table): Update to 1.13.0. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-08-12gnu: r-dplyr: Update to 1.0.1.•••* gnu/packages/statistics.scm (r-dplyr): Update to 1.0.1. Ricardo Wurmus
2020-08-12gnu: r-ggdendro: Update to 0.1.21.•••* gnu/packages/statistics.scm (r-ggdendro): Update to 0.1.21. [propagated-inputs]: Remove r-knitr. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-08-12gnu: r-bit64: Update to 4.0.2.•••* gnu/packages/statistics.scm (r-bit64): Update to 4.0.2. Ricardo Wurmus
2020-08-12gnu: r-bit: Update to 4.0.4.•••* gnu/packages/statistics.scm (r-bit): Update to 4.0.4. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-08-12gnu: r-brms: Update to 2.13.5.•••* gnu/packages/cran.scm (r-brms): Update to 2.13.5. Ricardo Wurmus
2020-08-12gnu: r-rxnat: Update to 1.0.12.•••* gnu/packages/cran.scm (r-rxnat): Update to 1.0.12. [propagated-inputs]: Add r-dplyr. Ricardo Wurmus
2020-08-12gnu: r-aws: Update to 2.4-3.•••* gnu/packages/cran.scm (r-aws): Update to 2.4-3. Ricardo Wurmus
2020-08-12gnu: r-rstanarm: Update to 2.21.1.•••* gnu/packages/cran.scm (r-rstanarm): Update to 2.21.1. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-08-12gnu: r-rstan: Update to 2.21.2.•••* gnu/packages/cran.scm (r-rstan): Update to 2.21.2. [propagated-inputs]: Add r-withr. Ricardo Wurmus
2020-08-12gnu: r-quanteda: Update to 2.1.1.•••* gnu/packages/cran.scm (r-quanteda): Update to 2.1.1. Ricardo Wurmus
2020-08-12gnu: r-shinycssloaders: Update to 1.0.0.•••* gnu/packages/cran.scm (r-shinycssloaders): Update to 1.0.0. Ricardo Wurmus
2020-08-12gnu: r-adamethods: Update to 1.2.1.•••* gnu/packages/cran.scm (r-adamethods): Update to 1.2.1. Ricardo Wurmus
2020-08-12gnu: r-fda: Update to 5.1.5.1.•••* gnu/packages/cran.scm (r-fda): Update to 5.1.5.1. Ricardo Wurmus
2020-08-12gnu: r-rgdal: Update to 1.5-16.•••* gnu/packages/cran.scm (r-rgdal): Update to 1.5-16. Ricardo Wurmus
2020-08-12gnu: r-parameters: Update to 0.8.2.•••* gnu/packages/cran.scm (r-parameters): Update to 0.8.2. Ricardo Wurmus
2020-08-12gnu: r-dalex: Update to 1.3.1.1.•••* gnu/packages/cran.scm (r-dalex): Update to 1.3.1.1. Ricardo Wurmus
2020-08-12gnu: r-ibreakdown: Update to 1.3.1.•••* gnu/packages/cran.scm (r-ibreakdown): Update to 1.3.1. Ricardo Wurmus
2020-08-12gnu: r-ingredients: Update to 1.3.1.•••* gnu/packages/cran.scm (r-ingredients): Update to 1.3.1. Ricardo Wurmus
2020-08-12gnu: r-gbm: Update to 2.1.8.•••* gnu/packages/cran.scm (r-gbm): Update to 2.1.8. [propagated-inputs]: Remove r-gridextra. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-08-12gnu: r-hierfstat: Update to 0.5-7.•••* gnu/packages/cran.scm (r-hierfstat): Update to 0.5-7. [propagated-inputs]: Add r-gaston. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-08-12gnu: r-ibdreg: Update to 0.3.1.•••* gnu/packages/cran.scm (r-ibdreg): Update to 0.3.1. Ricardo Wurmus
2020-08-12gnu: r-rms: Update to 6.0-1.•••* gnu/packages/cran.scm (r-rms): Update to 6.0-1. Ricardo Wurmus
2020-08-12gnu: r-sf: Update to 0.9-5.•••* gnu/packages/cran.scm (r-sf): Update to 0.9-5. Ricardo Wurmus
2020-08-12gnu: r-deldir: Update to 0.1-28.•••* gnu/packages/cran.scm (r-deldir): Update to 0.1-28. Ricardo Wurmus
2020-08-12gnu: r-irkernel: Update to 1.1.1.•••* gnu/packages/cran.scm (r-irkernel): Update to 1.1.1. Ricardo Wurmus
2020-08-12gnu: r-lavaan: Update to 0.6-7.•••* gnu/packages/cran.scm (r-lavaan): Update to 0.6-7. Ricardo Wurmus
2020-08-12gnu: r-compositions: Update to 2.0-0.•••* gnu/packages/cran.scm (r-compositions): Update to 2.0-0. [propagated-inputs]: Add r-mass. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-08-12gnu: r-epi: Update to 2.41.•••* gnu/packages/cran.scm (r-epi): Update to 2.41. Ricardo Wurmus
2020-08-12gnu: r-assertive: Update to 0.3-6.•••* gnu/packages/cran.scm (r-assertive): Update to 0.3-6. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-08-12gnu: r-assertive-datetimes: Update to 0.0-3.•••* gnu/packages/cran.scm (r-assertive-datetimes): Update to 0.0-3. Ricardo Wurmus
2020-08-12gnu: r-assertive-reflection: Update to 0.0-5.•••* gnu/packages/cran.scm (r-assertive-reflection): Update to 0.0-5. Ricardo Wurmus
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