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2020-06-28gnu: emacs-nov-el: Update to 0.3.1.•••* gnu/packages/emacs-xyz.scm (emacs-nov-el): Update to 0.3.1. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Simon South
2020-06-28gnu: emacs-nov-el: Use version tag instead of commit.•••* gnu/packages/emacs-xyz.scm (emacs-nov-el): Remove let binding and associated comment; correct indentation. [source]: Use version tag as commit identifier now that upstream has restored this information. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Simon South
2020-06-28gnu: r-qtl2: Update synopsis, description.•••* gnu/packages/bioinformatics.scm (r-qtl2)[synopsis]: Use upstream's synopsis. [description]: Same. Efraim Flashner
2020-06-28gnu: r-qtl2: Update to 0.22-8.•••* gnu/packages/bioinformatics.scm (r-qtl2): Update to 0.22-8. [source]: Download from cran. Efraim Flashner
2020-06-28gnu: Add rust-scrypt-0.2.•••* gnu/packages/crates-io.scm (rust-scrypt-0.2): New variable. Efraim Flashner
2020-06-28gnu: Add rust-pbkdf2-0.3.•••* gnu/packages/crates-io.scm (rust-pbkdf2-0.3): New variable. Efraim Flashner
2020-06-28gnu: Add rust-hmac-0.7.•••* gnu/packages/crates-io.scm (rust-hmac-0.7): New variable. Efraim Flashner
2020-06-28gnu: Add rust-md-5-0.8.•••* gnu/packages/crates-io.scm (rust-md-5-0.8): New variable. Efraim Flashner
2020-06-28gnu: Add rust-md5-asm-0.4.•••* gnu/packages/crates-io.scm (rust-md5-asm-0.4): New variable. Efraim Flashner
2020-06-27gnu: emacs-idris-mode: Update to 1.0.•••* gnu/packages/emacs-xyz.scm (emacs-idris-mode): Update to 1.0. [description]: Mention compatibility with Idris 1. Eric Bavier
2020-06-28gnu: r-fpc: Update to 2.2-7.•••* gnu/packages/statistics.scm (r-fpc): Update to 2.2-7. Ricardo Wurmus
2020-06-28gnu: r-openssl: Update to 1.4.2.•••* gnu/packages/statistics.scm (r-openssl): Update to 1.4.2. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-28gnu: r-roxygen2: Update to 7.1.1.•••* gnu/packages/statistics.scm (r-roxygen2): Update to 7.1.1. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-28gnu: r-directlabels: Update to 2020.6.17.•••* gnu/packages/cran.scm (r-directlabels): Update to 2020.6.17. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-28gnu: r-rgdal: Update to 1.5-12.•••* gnu/packages/cran.scm (r-rgdal): Update to 1.5-12. Ricardo Wurmus
2020-06-28gnu: r-flexdashboard: Update to 0.5.2.•••* gnu/packages/cran.scm (r-flexdashboard): Update to 0.5.2. [source]: Delete minified JavaScript files in a snippet. Ricardo Wurmus
2020-06-28gnu: r-rcppparallel: Update to 5.0.2.•••* gnu/packages/cran.scm (r-rcppparallel): Update to 5.0.2. Ricardo Wurmus
2020-06-28gnu: r-emmeans: Update to 1.4.8.•••* gnu/packages/cran.scm (r-emmeans): Update to 1.4.8. Ricardo Wurmus
2020-06-28gnu: r-raster: Update to 3.3-7.•••* gnu/packages/cran.scm (r-raster): Update to 3.3-7. Ricardo Wurmus
2020-06-28gnu: r-sjlabelled: Update to 1.1.6.•••* gnu/packages/cran.scm (r-sjlabelled): Update to 1.1.6. Ricardo Wurmus
2020-06-28gnu: r-officer: Update to 0.3.12.•••* gnu/packages/cran.scm (r-officer): Update to 0.3.12. Ricardo Wurmus
2020-06-28gnu: r-ggpubr: Update to 0.4.0.•••* gnu/packages/cran.scm (r-ggpubr): Update to 0.4.0. Ricardo Wurmus
2020-06-28gnu: r-renv: Update to 0.11.0.•••* gnu/packages/cran.scm (r-renv): Update to 0.11.0. Ricardo Wurmus
2020-06-28gnu: r-jsonlite: Update to 1.7.0.•••* gnu/packages/cran.scm (r-jsonlite): Update to 1.7.0. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-28gnu: r-scater: Update to 1.16.2.•••* gnu/packages/bioinformatics.scm (r-scater): Update to 1.16.2. Ricardo Wurmus
2020-06-28gnu: r-biocviews: Update to 1.56.1.•••* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.56.1. Ricardo Wurmus
2020-06-28gnu: r-dexseq: Update to 1.34.1.•••* gnu/packages/bioinformatics.scm (r-dexseq): Update to 1.34.1. Ricardo Wurmus
2020-06-27gnu: dropbear: Update to 2020.80 [fix for CVE-2018-20685].•••* gnu/packages/ssh.scm (dropbear): Update to 2020.80. Tobias Geerinckx-Rice
2020-06-27gnu: lxqt: Update to 0.15.0.•••* gnu/packages/lxqt.scm (libstatgrab): Update to 0.92. (lxqt-build-tools): Update to 0.7.0. (libqtxdg): Update to 3.5.0. (liblxqt): Update to 0.15.1. (libsysstat): Update to 0.4.3. (lxqt-about): Update to 0.15.0. (lxqt-admin): Update to 0.15.0. (lxqt-config): Update to 0.15.0. (lxqt-globalkeys): Update to 0.15.0. (lxqt-notificationd): Update to 0.15.0. (lxqt-openssh-askpass): Update to 0.15.0. (lxqt-panel): Update to 0.15.1. (lxqt-policykit): Update to 0.15.0. (lxqt-powermanagement): Update to 0.15.0. (lxqt-qtplugin): Update to 0.15.1. (lxqt-runner): Update to 0.15.0. (lxqt-session): Update to 0.15.0. (lxqt-sudo): Update to 0.15.0. (lxqt-themes): Update to 0.15.0. (libfm-qt): Update to 0.15.1. (pcmanfm-qt): Update to 0.15.1. (compton-conf): Update to 0.15.0. (lximage-qt): Update to 0.15.0. (obconf-qt): Update to 0.15.0. (pavucontrol-qt): Update to 0.15.0. (qps): Update to 2.1.0. (qps)[inputs]: Add kwindowsystem, liblxqt and libqtxdg. (qtermwidget): Update to 0.15.0. (qterminal): Update to 0.15.0. (screengrab): Update to 2.0.1. (lxqt-archiver): Update to 0.2.0. (lxqt-archiver)[origin]: Use tarball release. (lxqt-connman-applet): Update to 0.15.0. (lxqt-connman-applet)[arguments]: Add new patch phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org> André Batista
2020-06-27gnu: libtiff: Use HTTPS.•••* gnu/packages/image.scm (libtiff)[source]: Use HTTPS. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Timotej Lazar
2020-06-27packages: Recognize SHA3 and BLAKE2s for 'content-hash'.•••* guix/packages.scm (build-content-hash): Add 'sha3-256', 'sha3-512', and 'blake2s-256'. * tests/packages.scm ("package-source-derivation, origin, sha3-512"): New test. Ludovic Courtès
2020-06-27daemon: Recognize SHA3 and BLAKE2s.•••* nix/libutil/hash.hh (HashType): Add htSHA3_256, htSHA3_512, and htBLAKE2s_256. * nix/libutil/hash.cc (parseHashType, printHashType): Recognize them. * tests/store.scm ("add-to-store"): Test these algorithms. Ludovic Courtès
2020-06-27daemon: Remove OpenSSL hash compatibility wrappers.•••* nix/libutil/hash.cc (struct Ctx): Copy from gcrypt-hash.hh. (start, update, finish): Use gcrypt functions directly instead of OpenSSL-like wrappers. * nix/libutil/gcrypt-hash.cc, nix/libutil/gcrypt-hash.hh, nix/libutil/md5.h, nix/libutil/sha1.h, nix/libutil/sha256.h, nix/libutil/sha512.h: Remove. * nix/local.mk (libutil_a_SOURCES, libutil_headers): Adjust accordingly. Ludovic Courtès
2020-06-27daemon: Map directly to gcrypt hash functions.•••* nix/libutil/hash.hh (HashType): Map directly to GCRY_MD_ values. (md5HashSize, sha1HashSize, sha256HashSize, sha512HashSize): Remove. * nix/libutil/hash.cc (Hash::Hash): Use 'gcry_md_get_algo_dlen'. Ludovic Courtès
2020-06-27bash completion: Complete 'guix environment' properly.•••* etc/completion/bash/guix (_guix_complete): Add case for "guix environment". Ludovic Courtès
2020-06-27gnu: Add autofs.•••* gnu/packages/file-systems.scm (autofs): New public variable. Co-authored-by: Oleg Pykhalov <go.wigust@gmail.com> Tobias Geerinckx-Rice
2020-06-27gnu: python-setproctitle: Fix indentation.•••* gnu/packages/python-xyz.scm (python-setproctitle): Re-indent. Tobias Geerinckx-Rice
2020-06-27gnu: python-setproctitle: Fix build.•••* gnu/packages/python-xyz.scm (python-setproctitle)[arguments]: Add ‘--embed’ to $PYCONFIG. Tobias Geerinckx-Rice
2020-06-27gnu: Add r-shapforxgboost.•••* gnu/packages/cran.scm (r-shapforxgboost): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Peter Lo
2020-06-27gnu: Add emacs-browse-kill-ring.•••* gnu/packages/emacs-xyz.scm (emacs-browse-kill-ring): New variable. Ricardo Wurmus
2020-06-27gnu: x265: Update to 3.4.•••* gnu/packages/patches/x265-arm-flags.patch: Update patch. * gnu/packages/video.scm (x265): Update to 3.4. [arguments]: Remove obsolete substitution. Disable the newly-added assembly optimizations on AArch64, as they are not implemented for all targets we build. Marius Bakke
2020-06-27gnu: libcyaml: Remove unused input.•••* gnu/packages/web.scm (libcyaml)[native-inputs]: Remove GIT. Marius Bakke
2020-06-27gnu: ilmbase: Update to 2.5.2.•••* gnu/packages/patches/ilmbase-fix-test-arm.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/graphics.scm (ilmbase): Update to 2.5.2. [source](patches): Remove 'ilmbase-fix-test-arm.patch'. (openexr)[arguments]: Really increase test timeout, as the previous fix was ineffective. Marius Bakke
2020-06-27gnu: libzip: Update to 1.7.1.•••* gnu/packages/compression.scm (libzip): Update to 1.7.1. Marius Bakke
2020-06-27gnu: exempi: Delete the static library.•••* gnu/packages/freedesktop.scm (exempi)[arguments]: Add phase to delete libexempi.a. Marius Bakke
2020-06-27gnu: exempi: Update to 2.5.2.•••* gnu/packages/freedesktop.scm (exempi): Update to 2.5.2. Marius Bakke
2020-06-27gnu: python-gevent: Update to 20.6.2.•••* gnu/packages/python-xyz.scm (python-gevent): Update to 20.6.2. (python2-gevent)[native-inputs]: Add PYTHON2-SELECTORS2. Marius Bakke
2020-06-27gnu: python-greenlet: Update to 0.4.16.•••* gnu/packages/python-xyz.scm (python-greenlet): Update to 0.4.16. Marius Bakke
2020-06-27gnu: Add python2-selectors2.•••* gnu/packages/python-xyz.scm (python2-selectors2): New public variable. Marius Bakke
2020-06-27gnu: dav1d: Update to 0.7.1.•••* gnu/packages/video.scm (dav1d): Update to 0.7.1. Marius Bakke