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2018-03-11gnu: java-jeromq: Fix tests.Gábor Boskovits
* gnu/packages/patches/java-jeromq-fix-tests.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/java.scm (java-jeromq)[source](patches): Add it. [arguments](#test-exclude): Disable more failing tests.
2018-03-11gnu: java-hamcrest-all: Build with icedtea-8.Ricardo Wurmus
* gnu/packages/java.scm (java-hamcrest-all)[arguments]: Build with icedtea-8; do not disable tests. [inputs]: Remove java-hamcrest-core.
2018-03-11gnu: Add pigx-bsseq.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pigx-bsseq): New variable.
2018-03-11gnu: Add pigx-chipseq.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pigx-chipseq): New variable.
2018-03-11gnu: icedtea-8: Build "out" reproducibly.Ricardo Wurmus
Partially fixes <https://bugs.gnu.org/30730>. * gnu/packages/java.scm (icedtea-8)[arguments]: Add phases "patch-keystore" and "strip-jar-timestamps". [source]: Also patch DIST_ID in "configure" script.
2018-03-11gnu: gambit-c: Update to 4.8.9.Tobias Geerinckx-Rice
* gnu/packages/scheme.scm (gambit-c): Update to 4.8.9.
2018-03-11gnu: sssd: Update to 1.16.1.Tobias Geerinckx-Rice
* gnu/packages/sssd.scm (sssd): Update to 1.16.1.
2018-03-11gnu: git-remote-gcrypt: Update to 1.0.3.Tobias Geerinckx-Rice
* gnu/packages/version-control.scm (git-remote-gcrypt): Update to 1.0.3.
2018-03-11gnu: archivemount: Update to 0.8.9.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (archivemount): Update to 0.8.9.
2018-03-10gnu: haunt: Update to 0.2.2.David Thompson
* gnu/packages/guile.scm (haunt): Update to 0.2.2.
2018-03-10gnu: guile-syntax-highlight: Update to 0.1.David Thompson
* gnu/packages/guile.scm (guile-syntax-highlight): Update to 0.1.
2018-03-10gnu: enlightenment: Use 'loginctl' for system actions.Efraim Flashner
* gnu/packages/enlightenment.scm (enlightenment)[arguments]: Use 'loginctl' functions when powering off, sleeping, rebooting or suspending the system.
2018-03-10gnu: zsh: Fix CVE-2018-{7548,7549}.Leo Famulari
* gnu/packages/patches/zsh-CVE-2018-7548.patch, gnu/packages/patches/zsh-CVE-2018-7549.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/shells.scm (zsh)[source]: Use them.
2018-03-10services: databases: Add postgresql-configuration record exports.Christopher Baines
* gnu/services/databases.scm: Export the record type, and all the field accessors.
2018-03-10tests: databases: Add a system test for PostgreSQL.Christopher Baines
* gnu/tests/databases.scm (%postgresql-os, %test-postgresql): New variables. (run-postgresql-test): New procedure.
2018-03-10services: Rework the PostgreSQL config file to use a record type.Christopher Baines
For the default config file representation. This makes it possible to more easily change the configuration file, and have dynamic content. * gnu/services/databases.scm (<postgresql-config-file>): New record type. (%default-postgres-config): Remove this, it's been replaced by the configuration file. (<postgresql-configuration>): Alter the default for the config file field. (postgresql-service): Alter the default value for the config-file parameter.
2018-03-10gnu: r-minimal: Respect SOURCE_DATE_EPOCH in srcfile.Ricardo Wurmus
Fixes <https://bugs.gnu.org/30729>. * gnu/packages/statistics.scm (r-minimal)[arguments]: Replace timestamp hack with patch to "srcfile" and "srcfilecopy".
2018-03-10gnu: xprop: Update to 1.2.3.Marius Bakke
* gnu/packages/xorg.scm (xprop): Update to 1.2.3.
2018-03-10gnu: xpr: Update to 1.0.5.Marius Bakke
* gnu/packages/xorg.scm (xpr): Update to 1.0.5.
2018-03-10gnu: xlsfonts: Update to 1.0.6.Marius Bakke
* gnu/packages/xorg.scm (xlsfonts): Update to 1.0.6.
2018-03-10gnu: xkill: Update to 1.0.5.Marius Bakke
* gnu/packages/xorg.scm (xkill): Update to 1.0.5.
2018-03-10gnu: xbacklight: Update to 1.2.2.Marius Bakke
* gnu/packages/xorg.scm (xbacklight): Update to 1.2.2.
2018-03-10gnu: xwininfo: Update to 1.1.4.Marius Bakke
* gnu/packages/xorg.scm (xwininfo): Update to 1.1.4.
2018-03-10gnu: xset: Update to 1.2.4.Marius Bakke
* gnu/packages/xorg.scm (xset): Update to 1.2.4.
2018-03-10gnu: xwd: Update to 1.0.7.Marius Bakke
* gnu/packages/xorg.scm (xwd): Update to 1.0.7.
2018-03-10gnu: xlsclients: Update to 1.1.4.Marius Bakke
* gnu/packages/xorg.scm (xlsclients): Update to 1.1.4.
2018-03-10gnu: xmessage: Update to 1.0.5.Marius Bakke
* gnu/packages/xorg.scm (xmessage): Update to 1.0.5.
2018-03-10gnu: xinit: Update to 1.4.0.Marius Bakke
* gnu/packages/xorg.scm (xinit): Update to 1.4.0.
2018-03-10gnu: xwud: Update to 1.0.5.Marius Bakke
* gnu/packages/xorg.scm (xwud): Update to 1.0.5.
2018-03-10gnu: xsetroot: Update to 1.1.2.Marius Bakke
* gnu/packages/xorg.scm (xsetroot): Update to 1.1.2.
2018-03-10gnu: xrefresh: Update to 1.0.6.Marius Bakke
* gnu/packages/xorg.scm (xrefresh): Update to 1.0.6.
2018-03-10gnu: xrdb: Update to 1.1.1.Marius Bakke
* gnu/packages/xorg.scm (xrdb): Update to 1.1.1.
2018-03-10gnu: xfontsel: Update to 1.0.6.Marius Bakke
* gnu/packages/xorg.scm (xfontsel): Update to 1.0.6.
2018-03-10gnu: xcursor-themes: Update to 1.0.5.Marius Bakke
* gnu/packages/xorg.scm (xcursor-themes): Update to 1.0.5.
2018-03-10gnu: xbitmaps: Update to 1.1.2.Marius Bakke
* gnu/packages/xorg.scm (xbitmaps): Update to 1.1.2.
2018-03-10linux-initrd: Autoload known-module-aliases.Danny Milosavljevic
* gnu/system/linux-initrd.scm: Autoload known-module-aliases.
2018-03-09gnu: linux-libre: Update to 4.15.8.Mark H Weaver
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.15.8. (%linux-libre-hash): Update hash.
2018-03-09gnu: linux-libre@4.14: Update to 4.14.25.Mark H Weaver
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.25. (%linux-libre-4.14-hash): Update hash.
2018-03-10linux-initrd: Skip initrd module check when 'modules.alias' can't be found.Ludovic Courtès
Fixes <https://bugs.gnu.org/30760>. Reported by Tomáš Čech <sleep_walker@gnu.org>. * gnu/system/linux-initrd.scm (check-device-initrd-modules): Call 'known-module-aliases' and catch 'system-error around it. Pass it to 'matching-modules'.
2018-03-09gnu: 'autoconf-wrapper' is no longer a procedure.Ludovic Courtès
Fixes <https://bugs.gnu.org/30710>. Suggested by Björn Höfling <bjoern.hoefling@bjoernhoefling.de>. * gnu/packages/autotools.scm (autoconf-wrapper): Rename to... (make-autoconf-wrapper): ... this. Add 'properties' field. (autoconf-wrapper): New variable. * gnu/packages/gnunet.scm (guile-gnunet): Adjust accordingly. * gnu/packages/gnupg.scm (signing-party): Likewise. * gnu/packages/guile.scm (guile-ics, guile-bash): Likewise. * gnu/packages/libevent.scm (libuv): Likewise. * gnu/packages/logging.scm (glog): Likewise. * gnu/packages/mail.scm (libetpan): Likewise. * gnu/packages/mate.scm (mate-icon-theme-faenza) (mate-screensaver): Likewise. * gnu/packages/package-management.scm (guix): Likewise. * gnu/packages/sawfish.scm (librep): Likewise. * gnu/packages/video.scm (motion): Likewise. * gnu/packages/zile.scm (zile-on-guile): Likewise.
2018-03-09gnu: linux-libre@4.1: Update to 4.1.50.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.50.
2018-03-09gnu: Update python-django-gravatar2.Christopher Baines
* gnu/packages/django.scm (python-django-gravatar2)[version]: Update from 1.4.0 to 1.4.2. [source]: Update sha256 hash. [arguments]: Disable the tests, as the django project for the tests is missing.
2018-03-09gnu: Update python-django-filter to 1.1.0.Christopher Baines
* gnu/packages/django.scm (python-django-filter)[version]: Update from 0.14.0 to 1.1.0. [source]: Update sha256 hash. [native-inputs]: Add python-djangorestframework and python-django-crispy-forms as native inputs, as they are used in the test suite.
2018-03-09gnu: Add python-django-crispy-forms.Christopher Baines
* gnu/packages/django.scm (python-django-crispy-forms): New variable.
2018-03-09gnu: Add python-djangorestframework.Christopher Baines
* gnu/packages/django.scm (python-djangorestframework): New variable.
2018-03-09tests: mail: Add test for dovecot.Oleg Pykhalov
* gnu/tests/mail.scm (%dovecot-os, %test-dovecot): New variables. (run-dovecot-test): New procedure.
2018-03-09services: dovecot: Copy dovecot.conf to /etc/dovecot.Oleg Pykhalov
Many Dovecot utilities compiled with assumption of ‘/etc/dovecot/dovecot.conf’ existence. * gnu/services/mail.scm (dovecot-shepherd-service): Move config generation. Invoke ‘dovecot’ without ‘-c’ flag. (%dovecot-activation): Copy ‘dovecot.conf’ to ‘/etc/dovecot’. (dovecot-service-type): Make ‘%dovecot-activation’ non-constant.
2018-03-09gnu: r-rhdf5lib: Make build reproducible.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-rhdf5lib)[arguments]: Remove timestamp and host system kernel version.
2018-03-09gnu: hdf5: Do not record the build-time kernel version.Ricardo Wurmus
* gnu/packages/maths.scm (hdf5)[arguments]: Patch libhdf5.settings to prevent the kernel version on the build node from affecting the output.
2018-03-08gnu: r-fnn: Remove duplicate definition.Ricardo Wurmus
* gnu/packages/cran.scm (r-fnn)[home-page]: Use HTTPS. * gnu/packages/statistics.scm (r-fnn): Remove.
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