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2021-11-07gnu: r-decipher: Update to 2.22.0.•••* gnu/packages/bioconductor.scm (r-decipher): Update to 2.22.0. Ricardo Wurmus
2021-11-07gnu: r-cummerbund: Update to 2.36.0.•••* gnu/packages/bioconductor.scm (r-cummerbund): Update to 2.36.0. Ricardo Wurmus
2021-11-07gnu: r-coverageview: Update to 1.32.0.•••* gnu/packages/bioconductor.scm (r-coverageview): Update to 1.32.0. Ricardo Wurmus
2021-11-07gnu: r-biocgenerics: Update to 0.40.0.•••* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.40.0. Ricardo Wurmus
2021-11-07gnu: r-biocversion: Update to 3.14.0.•••* gnu/packages/bioconductor.scm (r-biocversion): Update to 3.14.0. Ricardo Wurmus
2021-11-07gnu: r-aneufinder: Update to 1.22.0.•••* gnu/packages/bioconductor.scm (r-aneufinder): Update to 1.22.0. Ricardo Wurmus
2021-11-07gnu: r-biocparallel: Update to 1.28.0.•••* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.28.0. [arguments]: Adjust build phase to patch renamed file. Ricardo Wurmus
2021-11-07gnu: Add r-msfeatures.•••* gnu/packages/bioconductor.scm (r-msfeatures): New variable. Ricardo Wurmus
2021-11-07guix: Upgrade to Bioconductor 3.14.•••* guix/build-system/r.scm (bioconductor-uri): Bump Bioconductor version to 3.14. * guix/import/cran.scm (%bioconductor-version): Same. Ricardo Wurmus
2021-11-07gnu: r-with-tests: Update patch to DESCRIPTION file.•••* gnu/packages/statistics.scm (r-with-tests)[arguments]: Patch line breaks and spaces in DESCRIPTION file to ensure reproducible build. Ricardo Wurmus
2021-11-07gnu: r-with-tests: Remove trailing #T.•••* gnu/packages/statistics.scm (r-with-tests)[arguments]: Remove trailing #T from build phases. Ricardo Wurmus
2021-11-07gnu: r-with-tests: Update to 4.1.2.•••* gnu/packages/statistics.scm (r-with-tests): Update to 4.1.2. Ricardo Wurmus
2021-11-07gnu: ardour: Update to 6.9.•••* gnu/packages/audio.scm (ardour): Update to 6.9. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Thorsten Wilms
2021-11-07shell: Actually clean up the profile cache.•••Previously, most actions would leave the cache as-is because 'guix-environment*' would indirectly call 'exit', and thus its continuation was never reached. * guix/scripts/shell.scm (guix-shell): Move call to 'maybe-remove-expired-cache-entries' to EXIT-HOOK. Ludovic Courtès
2021-11-07import: egg: Allow imports of a specific version.•••* guix/import/egg.scm (eggs-repository): Change URL. (egg-metadata): Accept optional #:version keyword argument. (egg->guix-package): Accept ‘version’ argument. (egg-recursive-import): Add ‘version’ argument and honor it. * guix/scripts/import/egg.scm (guix-import-egg): Parse a specification instead of just a package name. * doc/guix.texi (Invoking guix import): Document it. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Xinglu Chen
2021-11-07doc: Improve documentation of the Bash home service•••* doc/guix.texi (Shells Home Services): Document ‘home-bash-extension’ configuration record. * gnu/home/services/shells.scm (generate-home-bash-documentation): Extract docstrings from ‘home-bash-extension’. (home-bash-configuration): Expound on docstrings. (home-bash-extension): Likewise. Fixes: <https://issues.guix.gnu.org/50991> Signed-off-by: Ludovic Courtès <ludo@gnu.org> Xinglu Chen
2021-11-07home: services: bash: Add ‘aliases’ field.•••* doc/guix.texi (Shells Home Services): Document it. * gnu/home/services/shells.scm (bash-serialize-aliases): New procedure. (home-bash-configuration, home-bash-extension): Add ‘aliases’ field. (home-bash-extensions): Adjust accordingly. * guix/scripts/home/import.scm (generate-bash-configuration+modules): Populate the ‘alias’ field. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Xinglu Chen
2021-11-07file-systems: Validate the 'flags' field.•••Fixes <https://issues.guix.gnu.org/51425>. Reported by Jonathan Brielmaier <jonathan.brielmaier@web.de>. * gnu/system/file-systems.scm (invalid-file-system-flags) (%validate-file-system-flags): New procedures. (validate-file-system-flags): New macro. (<file-system>)[flags]: Add 'sanitize' property. Ludovic Courtès
2021-11-07ui: 'load*' correctly reports 'read-error' in all cases.•••Previously, 'read-error' exceptions other than "missing closing paren" would not be reported; instead, we'd directly call (exit 1) without printing anything. Fixes <https://issues.guix.gnu.org/51463>. Reported by Alice BRENON <alice.brenon@ens-lyon.fr>. * guix/ui.scm (report-load-error): Report the error without re-throwing upon 'read-error'. * tests/guix-build.sh: Add test. Ludovic Courtès
2021-11-07gnu: 0ad: Update to 0.0.25b-alpha.•••* gnu/packages/games.scm (0ad-data): Update to 0.0.25b-alpha. Unpack .zip files without need for a snippet. (0ad): Update to 0.0.25b-alpha. [arguments]<#:phases>: Properly unbundle cxxtest. Respect #:tests?. Install Freedesktop mimeinfo. Install icon to hicolor theme instead of share/pixmaps, which I don't think is used. <#:tests> Disable tests for now since they don't run. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Brendan Tildesley
2021-11-07gnu: ansible-core: Update to 2.11.6.•••* gnu/packages/admin.scm (ansible-core): Update to 2.11.6. Tobias Geerinckx-Rice
2021-11-07gnu: xfstests: Update to 1.1.0-1.bae1d15.•••* gnu/packages/file-systems.scm (xfstests): Update to 1.1.0-1.bae1d15. Tobias Geerinckx-Rice
2021-11-07gnu: lv2: Update to 1.18.2.•••* gnu/packages/audio.scm (lv2): Update to 1.18.2. Tobias Geerinckx-Rice
2021-11-07gnu: jalv: Update to 1.6.6.•••* gnu/packages/audio.scm (jalv): Update to 1.6.6. Tobias Geerinckx-Rice
2021-11-07gnu: lilv: Update to 0.24.12.•••* gnu/packages/audio.scm (lilv): Update to 0.24.12. [arguments]: Don't explicitly return #t from phases. Tobias Geerinckx-Rice
2021-11-07gnu: dvdisaster: Remove uninstallation script.•••* gnu/packages/cdrom.scm (dvdisaster)[arguments]: Add a new 'remove-uninstall-script phase. Tobias Geerinckx-Rice
2021-11-07gnu: dvdisaster: Update to 0.79.9.•••* gnu/packages/cdrom.scm (dvdisaster): Update to 0.79.9. [source, home-page]: Update home page. [arguments]: Don't explicitly return #t from phases. Tobias Geerinckx-Rice
2021-11-07gnu: openttd: Fix build failure.•••* packages/games.scm (openttd)[native-inputs]: Use gcc-9 to fix build failure. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com> Felix Gruber
2021-11-07gnu: openttd-openmsx: Update to 0.4.2.•••* packages/games.scm (openttd-openmsx): Update to 0.4.2. [native-inputs]: Replace python-2 with python-wrapper. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com> Felix Gruber
2021-11-07gnu: openttd-opensfx: Update to 1.0.2.•••* packages/games.scm (openttd-opensfx): Update to 1.0.2. [native-inputs]: Replace python-2 with python. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com> Felix Gruber
2021-11-07gnu: openttd-opengfx: Update to 7.1.•••* packages/games.scm (openttd-opengfx): Update to 7.1. [native-inputs]: Replace python-2 with python. [arguments]: Use cc-for-target. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com> Felix Gruber
2021-11-07gnu: openttd-engine: Update to 12.0.•••* gnu/packages/games.scm (openttd-engine): Update engine to 12.0. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com> Felix Gruber
2021-11-07gnu: Add weechat-wee-slack.•••* gnu/packages/messaging.scm (weechat-wee-slack): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Arun Isaac
2021-11-07gnu: Add weechat-matrix.•••* gnu/packages/messaging.scm (weechat-matrix): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Arun Isaac
2021-11-07gnu: Add python-webcolors.•••* gnu/packages/python-web.scm (python-webcolors): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Arun Isaac
2021-11-07gnu: Add rust-log4rs-1.•••* gnu/packages/crates-io.scm (rust-log4rs-1): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Vinicius Monego
2021-11-07gnu: Add rust-log-mdc-0.1.•••* gnu/packages/crates-io.scm (rust-log-mdc-0.1): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Vinicius Monego
2021-11-07gnu: Add rust-diffus-0.10.•••* gnu/packages/crates-io.scm (rust-diffus-0.10): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Vinicius Monego
2021-11-07gnu: Add rust-diffus-derive-0.10.•••* gnu/packages/crates-io.scm (rust-diffus-derive-0.10): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Vinicius Monego
2021-11-07gnu: Add rust-snake-case-0.3.•••* gnu/packages/crates-io.scm (rust-snake-case-0.3): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Vinicius Monego
2021-11-07gnu: Add rust-xmltree-0.10.•••* gnu/packages/crates-io.scm (rust-xmltree-0.10): New variable. (rust-xmltree-0.8): Inherit from above. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Vinicius Monego
2021-11-07gnu: Add rust-color-backtrace-0.5.•••* gnu/packages/crates-io.scm (rust-color-backtrace-0.5): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Vinicius Monego
2021-11-07gnu: x42-plugins: Prepare for cross-compiling.•••* gnu/packages/music.scm (x42-plugins)[arguments]: Remove 'set-CC-variable phase. Use cc-for-target in make-flags. Efraim Flashner
2021-11-07gnu: x42-plugins: Update to 20211016.•••* gnu/packages/music.scm (x42-plugins): Update to 20211016. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Thorsten Wilms
2021-11-07guix-install.sh: Undo some bugs introduced by shellcheck.•••* etc/guix-install.sh: Unquote all file names containing ~root. Tobias Geerinckx-Rice
2021-11-07gnu: emacs-stream: Don't set a source file name.•••This is a follow-up to 678248f5ea3d3d19bc2a5a41d90bb30e63e667e1. * gnu/packages/emacs-xyz.scm (emacs-stream)[source]: Remove FILE-NAME, as the tarball name is already OK; and the -checkout name breaks build system assumptions on the core-updates branch. Marius Bakke
2021-11-07gnu: osm2pgsql: Update to 1.5.1.•••* gnu/packages/geo.scm (osm2pgsql): Update to 1.5.1. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Felix Gruber
2021-11-07gnu: protozero: Update to 1.7.0.•••* gnu/packages/protobuf.scm (protozero): Update to 1.7.0. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Felix Gruber
2021-11-07gnu: libosmium: Update to 2.17.1.•••* gnu/packages/geo.scm (libosmium): Update to 2.17.1. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Felix Gruber
2021-11-07gnu: webkitgtk: Improve the 32-bit x86 target check.•••* gnu/packages/webkit.scm (webkitgtk)[arguments]: In the 'prepare-build-environment' phase, use 'target-x86-32?'. Mark H Weaver
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