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2018-11-23gnu: slepc: Update to 3.10.1....* gnu/packages/maths.scm (slepc): Update to 3.10.1. Signed-off-by: Marius Bakke <mbakke@fastmail.com> Paul Garlick
2018-11-23gnu: petsc: Update to 3.10.2...* gnu/packages/maths.scm (petsc): Update to 3.10.2. Signed-off-by: Marius Bakke <mbakke@fastmail.com> Paul Garlick
2018-11-23gnu: python-ilinkedlist: Update to 0.4.0....* gnu/packages/python.scm (python-ilinkedlist): Update to 0.4.0. Signed-off-by: Marius Bakke <mbakke@fastmail.com> Luther Thompson
2018-11-23gnu: pt-scotch, pt-scotch32: Add Open MPI setup phase....* gnu/packages/maths.scm (pt-scotch)[arguments]: Use 'invoke' instead of 'system*'. Add 'mpi-setup' phase. (pt-scotch32)[arguments]: Likewise. Ludovic Courtès
2018-11-23gnu: pigx-scrnaseq: Use latest snakemake....* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[inputs]: Replace snakemake-4 with snakemake. Ricardo Wurmus
2018-11-23gnu: pigx-bsseq: Use latest snakemake....* gnu/packages/bioinformatics.scm (pigx-bsseq)[inputs]: Replace snakemake-4 with snakemake. Ricardo Wurmus
2018-11-23gnu: pigx-chipseq: Use latest snakemake....* gnu/packages/bioinformatics.scm (pigx-chipseq)[inputs]: Replace snakemake-4 with snakemake. Ricardo Wurmus
2018-11-23gnu: python-gevent: Update to 1.3.7....* gnu/packages/python.scm (python-gevent): Update to 1.3.7. [arguments]: Find headers for greenlet in phase "do-not-use-bundled-sources". [propagated-inputs]: Add python-objgraph. Ricardo Wurmus
2018-11-23gnu: Add python-objgraph....* gnu/packages/python.scm (python-objgraph): New variable. Ricardo Wurmus
2018-11-23gnu: python-loompy: Remove python-typing....* gnu/packages/bioinformatics.scm (python-loompy)[propagated-inputs]: Remove python-typing. Ricardo Wurmus
2018-11-23build: Binary tarball now populates the "current-guix" profile....* Makefile.am (guix-binary.%.tar.xz): Pass '--profile-name=current-guix'. Remove glibc and glibc-utf8-locales. * doc/guix.texi (Binary Installation): Update accordingly. * etc/guix-install.sh * etc/guix-install.sh (sys_create_store, sys_enable_guix_daemon) (sys_authorize_build_farms): Likewise. * etc/guix-publish.conf.in, etc/guix-publish.service.in, etc/guix-daemon.conf.in, etc/guix-daemon.service.in: Update file names accordingly. Ludovic Courtès
2018-11-23pack: Add '--profile-name'....* guix/scripts/pack.scm (self-contained-tarball): Add #:profile-name and honor it. (squashfs-image, docker-image): Add #:profile-name. (%default-options): Add 'profile-name'. (%options, show-help): Add "--profile-name". (guix-pack): Honor it. * tests/guix-pack-localstatedir.sh: New file. * Makefile.am (SH_TESTS): Add it. * doc/guix.texi (Invoking guix pack): Document "--profile-name". Ludovic Courtès
2018-11-23Update NEWS.Ludovic Courtès
2018-11-23status: Display 'build-remote' events....* guix/status.scm (print-build-event): Add clause for 'build-remote'. Ludovic Courtès
2018-11-23Update Guile-SQLite3 URL everywhere....* README: Update Guile-SQLite3 URL. * doc/guix.texi (Requirements): Likewise. * guix/store/database.scm (sqlite-exec): Likewise. * m4/guix.m4 (GUIX_CHECK_GUILE_SQLITE3): Likewise. Ludovic Courtès
2018-11-23gnu: emacs-picpocket: Update to 40....Fix version string as well: <https://lists.gnu.org/archive/html/guix-devel/2018-11/msg00286.html>. * gnu/packages/emacs.scm (emacs-picpocket): Update to 40. Alex Vong
2018-11-23gnu: xpra: Update to 2.4.2....* gnu/packages/xorg.scm (xpra): Update to 2.4.2. Rutger Helling
2018-11-22gnu: Add u-boot-pinebook....* gnu/packages/patches/u-boot-pinebook-a64-update-dts.patch: New file. * gnu/packages/patches/u-boot-pinebook-syscon-node.patch: New file. * gnu/packages/patches/u-boot-pinebook-mmc-calibration.patch: New file. * gnu/packages/patches/u-boot-pinebook-video-bridge.patch: New file. * gnu/packages/patches/u-boot-pinebook-r_i2c-controller.patch: New file. * gnu/packages/patches/u-boot-pinebook-dts.patch: New file. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/bootloaders.scm (u-boot-pinebook): New exported variable. * gnu/bootloader/u-boot.scm (u-boot-pinebook-bootloader): New exported variable. * gnu/system/install.scm (pinebook-installation-os): New exported variable. Vagrant Cascadian
2018-11-22gnu: podofo: Add patch to fix build....* gnu/packages/patches/podofo-cmake-3.12.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/pdf.scm (podofo)[source]: Add patch. Ricardo Wurmus
2018-11-22gnu: jalv: Build with python-2....* gnu/packages/audio.scm (jalv)[arguments]: Build with python-2. Efraim Flashner
2018-11-22gnu: ccl: Fix missing command line argument support in wrapper....* gnu/packages/lisp.scm (ccl): Fix missing command line argument support in wrapper. Pierre Neidhardt
2018-11-22describe: Add recutils format....* guix/scripts/describe.scm (channel->recutils): New procedure. (display-checkout-info, display-profile-info): Use this. (%options): Add 'recutils' option. * doc/guix.texi (Invoking guix describe): Document this. Oleg Pykhalov
2018-11-22describe: Add json format....* guix/scripts/describe.scm (channel->json): New procedure. (display-checkout-info, display-profile-info): Use this. (%options): Add 'json' option. * doc/guix.texi (Invoking guix describe): Document this. Oleg Pykhalov
2018-11-22describe: Use a procedure to format output....* guix/scripts/describe.scm (channel->sexp): New procedure. (display-checkout-info, display-profile-info): Use this. Oleg Pykhalov
2018-11-22gnu: gajim: Rename wrap-program phases....* gnu/packages/messaging.scm (gajim)[arguments]: Rename wrap-program phases to wrap-gi-typelib-path and wrap-gsettings-schema-dir. Arun Isaac
2018-11-22gnu: python-scikit-learn: Update to 0.20.1....* gnu/packages/patches/python-scikit-learn-fix-test-non-determinism.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/machine-learning.scm (python-scikit-learn): Update to 0.20.1. [source](patches): Remove. [arguments]: Skip network tests with pytest instead of deleting files. Make sure $HOME is writable. (python2-scikit-learn): Rewrite in terms of PACKAGE-WITH-PYTHON2. Marius Bakke
2018-11-22gnu: supercollider: Update to 3.9.3....* gnu/packages/audio.scm (supercollider): Update to 3.9.3. Nicolas Goaziou
2018-11-22gnu: giac-xcas: Add a "doc" output...* gnu/packages/algebra.scm (giac-xcas): Add "doc" output. [arguments]: Add phase to install documentation in the appropriate directory. Nicolas Goaziou
2018-11-22gnu: giac-xcas: Update to 1.5.0-19....* gnu/packages/algebra.scm (giac-xcas): Update to 1.5.0-19. Nicolas Goaziou
2018-11-22gnu: ccl: Properly include x86-headers and remove missing "contrib" folder....* gnu/packages/lisp.scm (ccl): Include x86-headers and remove missing "contrib" folder. [home-page]: Use HTTPS. Pierre Neidhardt
2018-11-22Merge branch 'master' into core-updatesMarius Bakke
2018-11-22gnu: python-tblib: Fix test failure with Python 3.7....* gnu/packages/python.scm (python-tblib)[arguments]: Add 'adjust-tests' phase. Marius Bakke
2018-11-21linux-initrd: 'expression->initrd' returns the complete file name....Previously 'expression->initrd' would return the directory that contains the 'initrd' file; now it returns the complete file name for that file. * gnu/system/linux-initrd.scm (expression->initrd)[builder]: Change output file name to "initrd.cpio.gz". Tail-call 'file-append' to return the complete file name. * gnu/system.scm (operating-system-initrd-file): Remove 'file-append' call. * gnu/build/linux-initrd.scm (write-cpio-archive): Check whether OUTPUT already has the ".gz" suffix; rename if before invoking GZIP if it does, and otherwise after. * gnu/system/vm.scm (expression->derivation-in-linux-vm)[builder]: Do not append "/initrd" to #$initrd. Ludovic Courtès
2018-11-21guix system: Fix 'init' again....Fixes a regression introduced in 52ee4479ef26826a53b9929cd00ca7738be687b1, whereby 'install' would now be passed a procedure instead of a lowerable object. * guix/scripts/system.scm (perform-action): Pass BOOTLOADER-SCRIPT as the #:bootloader-installer argument of 'install'. Ludovic Courtès
2018-11-21gnu: python-numpy: Update to 1.15.4....* gnu/packages/python.scm (python-numpy): Update to 1.15.4. Marius Bakke
2018-11-21gnu: mbedtls-apache: Update to 2.14.0....* gnu/packages/tls.scm (mbedtls-apache): Update to 2.14.0. Marius Bakke
2018-11-21gnu: termite: Update to 14....* gnu/packages/terminals.scm (termite): Update to 14. Marius Bakke
2018-11-21gnu: vte-ng: Update to 0.54.2.a....* gnu/packages/gnome.scm (vte-ng): Update to 0.54.2.a. Marius Bakke
2018-11-21gnu: vte-ng: Fetch source using git....* gnu/packages/gnome.scm (vte-ng)[source]: Rewrite in terms of GIT-FETCH. Marius Bakke
2018-11-21gnu: vte-ng: Add a home page....* gnu/packages/gnome.scm (vte-ng)[home-page]: New field. Marius Bakke
2018-11-21gnu: python-numpy: Update to 1.14.6....* gnu/packages/python.scm (python-numpy): Update to 1.14.6. Marius Bakke
2018-11-21gnu: webkitgtk: Update to 2.22.4....* gnu/packages/webkit.scm (webkitgtk-2.22): Update to 2.22.4. Marius Bakke
2018-11-21gnu: git: Update to 2.19.2....* gnu/packages/version-control.scm (git): Update to 2.19.2. Marius Bakke
2018-11-21gnu: feh: Update to 3.1....* gnu/packages/image-viewers.scm (feh): Update to 3.1. Marius Bakke
2018-11-22gnu: teeworlds: Update to 0.7.0 [fixes CVE-2018-18541]....* gnu/packages/games.scm (teeworlds): Update to 0.7.0. [source]: Switch to git-fetch. Remove all bundled libraries except md5. [arguments]: Adjust accordingly. [inputs]: Use sdl2 instead of sdl and python-wrapper instead of python-2. Add json-parser and pnglite. * gnu/packages/patches/teeworlds-use-latest-wavpack.patch: Update it. Alex Vong
2018-11-22gnu: bam: Update to 0.5.1....* gnu/packages/build-tools.scm (bam): Update to 0.5.1. [source]: Switch to git-fetch. [arguments]: Use newly provided Makefile. [inputs]: Add lua. Alex Vong
2018-11-22gnu: Add json-parser....* gnu/packages/web.scm (json-parser): New variable. Alex Vong
2018-11-22gnu: Add pnglite....* gnu/packages/image.scm (pnglite): New variable. Alex Vong
2018-11-21Merge remote-tracking branch 'origin/master' into core-updatesEfraim Flashner
2018-11-21gnu: libbytesize: Make .mo file builds reproducible....* gnu/packages/c.scm (libbytesize)[sources](modules, snippet): New fields. [arguments]: Add #:configure-flags and #:phases. Ludovic Courtès