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2016-08-10gnu: openbox: Fix autostart.Efraim Flashner
* gnu/packages/openbox.scm (openbox)[inputs]: Add python2. [propagated-inputs]: Add python2-pyxdg.
2016-08-10gnu: ruby-arel: Update to 7.1.1.Ben Woodcroft
* gnu/packages/ruby.scm (ruby-arel): Update to 7.1.1.
2016-08-10gnu: ruby-simplecov: Update to 0.12.0.Ben Woodcroft
* gnu/packages/ruby.scm (ruby-simplecov): Update to 0.12.0.
2016-08-10gnu: ruby-gherkin3: Rename to ruby-gherkin and update to 4.0.0.Ben Woodcroft
* gnu/packages/ruby.scm (ruby-gherkin3): Rename to ruby-gherkin and update to 4.0.0. (ruby-cucumber-core)[propagated-inputs]: Adjust accordingly.
2016-08-10gnu: ruby-spring: Update to 1.7.2.Ben Woodcroft
* gnu/packages/rails.scm (ruby-spring): Update to 1.7.2.
2016-08-10gnu: ruby-rspec: Update to 3.5.0.Ben Woodcroft
These packages should be updated together. * gnu/packages/ruby.scm (ruby-rspec): Update to 3.5.0. (ruby-rspec-core): Update to 3.5.0. (ruby-rspec-mocks): Update to 3.5.0. (ruby-rspec-expectation): Update to 3.5.1. (ruby-rspec-support): Update to 3.5.0.
2016-08-10gnu: ruby-rack: Update to 2.0.1.Ben Woodcroft
* gnu/packages/ruby.scm (ruby-rack): Update to 2.0.1. [source]: Use GitHub and patch. [native-inputs]: Add ruby-concurrent, ruby-minitest, ruby-minitest-sprint, which. Remove ruby-bacon. [propagated-inputs]: Add ruby-concurrent. * gnu/packages/patches/ruby-rack-ignore-failing-test.patch: New file. * gnu/local.mk: Add it.
2016-08-10gnu: ruby-concurrent: Remove dependencies.Ben Woodcroft
ruby-timecop and ruby-yard will links in a circular dependency chain after ruby-rack is updated. * gnu/packages/ruby.scm (ruby-concurrent)[arguments]: Remove timecop-dependent tests. [native-inputs]: Remove ruby-timecop, ruby-yard.
2016-08-10gnu: ruby-activesupport: Update to 5.0.0.Ben Woodcroft
* gnu/packages/ruby.scm (ruby-activesupport): Update to 5.0.0. [arguments]: Include the library as a test. [propagated-inputs]: Add ruby-concurrent. Remove ruby-thread-safe, ruby-json.
2016-08-10gnu: ruby-puma: Update to 3.6.0.Ben Woodcroft
* gnu/packages/ruby.scm (ruby-puma): Update to 3.6.0. [arguments]: Add 'delete-integration-tests' phase. (gnu/packages/patches/ruby-puma-ignore-broken-test.patch): Remove only one broken test.
2016-08-09gnu: mpd: Update to 0.19.18.Leo Famulari
* gnu/packages/mpd.scm (mpd): Update to 0.19.18.
2016-08-09grafts: Make grafting faster.Mark H Weaver
* guix/build/graft.scm (replace-store-references): Reimplement for faster grafting. Use binary I/O instead of textual I/O. Replace 'mapping' argument (an alist) with 'replacement-table' (a vhash). (rewrite-directory): Adapt to mapping argument change in 'replace-store-references'. Remove 'with-fluids' that previously set '%default-port-encoding' to #f, since we now use binary I/O. (define-inline, hash-length): New macros. (nix-base32-char?): New variable.
2016-08-09gnu: bash-completion: Update to 2.3. Update the patch.Tomáš Čech
* gnu/packages/bash.scm (bash-completion): Update to 2.3. * gnu/packages/patches/bash-completion-directories.patch: New version of the patch for the same purpose.
2016-08-09gnu: bash-completion: Modify to modify-phases.Tomáš Čech
* gnu/packages/bash.scm (bash-completion): Use modify-phases instead of alist-cons-after.
2016-08-08gnu: Add perl-crypt-openssl-random.Danny Milosavljevic
* gnu/packages/tls.scm (perl-crypt-openssl-random): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-08-08gnu: Add perl-io-socket-inet6.Danny Milosavljevic
* gnu/packages/networking.scm (perl-io-socket-inet6): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-08-08gnu: Add perl-mail-spf.Danny Milosavljevic
* gnu/package/mail.scm (perl-mail-spf): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-08-08gnu: Add perl-crypt-openssl-bignum.Danny Milosavljevic
* gnu/packages/tls.scm (perl-crypt-openssl-bignum, perl-crypt-arguments): New variables. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-08-08gnu: Add perl-crypt-openssl-rsa.Danny Milosavljevic
* gnu/packages/tls.scm (perl-crypt-openssl-rsa): Add variable. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-08-08gnu: Add perl-geo-ip.Danny Milosavljevic
* gnu/packages/networking.scm (perl-geo-ip): Add variable. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-08-08gnu: Add perl-net-cidr-lite.Danny Milosavljevic
* gnu/packages/networking.scm (perl-net-cidr-lite): Add variable. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-08-08gnu: Add perl-encode-detect.Danny Milosavljevic
* gnu/packages/perl.scm (perl-encode-detect): Add variable. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-08-08gnu: Add perl-test-trailingspace.Danny Milosavljevic
* gnu/packages/perl.scm (perl-test-trailingspace): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-08-08gnu: Add perl-file-find-object-rule.Danny Milosavljevic
* gnu/packages/perl.scm (perl-file-find-object-rule): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-08-08gnu: Add perl-file-find-object.Leo Famulari
* gnu/packages/perl.scm (perl-file-find-object): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-08-08gnu: Add perl-net-patricia.Danny Milosavljevic
* gnu/packages/networking.scm (perl-net-patricia): Add variable. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-08-08gnu: Add perl-netaddr-ip.Danny Milosavljevic
* gnu/packages/networking.scm (perl-netaddr-ip): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-08-08gnu: Add perl-net-dns-resolver-programmable.Danny Milosavljevic
* gnu/packages/networking.scm (perl-net-dns-resolver-programmable): New variable. * gnu/packages/patches/perl-net-dns-resolver-programmable-Fix-broken-interface.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-08-08gnu: Add perl-socket6.Danny Milosavljevic
* gnu/packages/networking.scm (perl-socket6): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-08-08gnu: Add perl-net-dns.Danny Milosavljevic
* gnu/packages/networking.scm (perl-net-dns): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-08-08gnu: fontconfig: Fix CVE-2016-5384.Leo Famulari
* gnu/packages/fontutils.scm (fontconfig)[replacement]: New field. (fontconfig/fixed): New variable. * gnu/packages/patches/fontconfig-CVE-2016-5384.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2016-08-08gnu: recordmydesktop: Add ALSA support.8p8c
* gnu/packages/video.scm (recordmydesktop)[inputs]: Add ALSA-LIB Signed-off-by: Leo Famulari <leo@famulari.name>
2016-08-08gnu: Add tint2.Mathieu Lirzin
* gnu/packages/xdisorg.scm (tint2): New variable.
2016-08-08gnu: Add mono.Jan Nieuwenhuizen
* gnu/packages/mono.scm: New file. * gnu/packages/local.mk (GNU_SYSTEM_MODULES): Add it. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-08-08gnu: Add roary.Ben Woodcroft
* gnu/packages/bioinformatics.scm (roary): New variable.
2016-08-08gnu: Add raxml.Ben Woodcroft
* gnu/packages/bioinformatics.scm (raxml): New variable.
2016-08-08gnu: Add prank.Ben Woodcroft
* gnu/packages/bioinformatics.scm (prank): New variable.
2016-08-08gnu: Add exonerate.Ben Woodcroft
* gnu/packages/bioinformatics.scm (exonerate): New variable.
2016-08-08gnu: Add bppsuite.Ben Woodcroft
* gnu/packages/bioinformatics.scm (bppsuite): New variable.
2016-08-08gnu: Add bpp-popgen.Ben Woodcroft
* gnu/packages/bioinformatics.scm (bpp-popgen): New variable.
2016-08-08gnu: Add bpp-phyl.Ben Woodcroft
* gnu/packages/bioinformatics.scm (bpp-phyl): New variable.
2016-08-08gnu: Add bpp-seq.Ben Woodcroft
* gnu/packages/bioinformatics.scm (bpp-seq): New variable.
2016-08-08gnu: Add bpp-core.Ben Woodcroft
* gnu/packages/bioinformatics.scm (bpp-core): New variable.
2016-08-08gnu: Add mcl.Ben Woodcroft
* gnu/packages/machine-learning.scm (mcl): New variable.
2016-08-08gnu: Add perl-env-path.Ben Woodcroft
* gnu/packages/perl.scm (perl-env-path): New variable.
2016-08-08gnu: Add perl-test-files.Ben Woodcroft
* gnu/packages/perl.scm (perl-test-files): New variable.
2016-08-08gnu: Add perl-array-utils.Ben Woodcroft
* gnu/packages/perl.scm (perl-array-utils): New variable.
2016-08-08gnu: Add perl-file-grep.Ben Woodcroft
* gnu/packages/perl.scm (perl-file-grep): New variable.
2016-08-08gnu: Add perl-file-path.Ben Woodcroft
* gnu/packages/perl.scm (perl-file-path): New variable.
2016-08-08gnu: Add perl-file-slurper.Ben Woodcroft
* gnu/packages/perl.scm (perl-file-slurper): New variable.
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