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2019-08-16gnu: wcslib: Update to 6.4....* gnu/packages/astronomy.scm (wcslib): Update to 6.4. Tobias Geerinckx-Rice
2019-08-16import: cran: Support experiment and annotation packages....* guix/import/cran.scm (%bioconductor-packages-list-url): Replace variable... (bioconductor-packages-list-url): ...with this procedure. (bioconductor-packages-list): Accept optional TYPE argument. (latest-bioconductor-package-version): Same. (fetch-description): Determine package type and use it in calls to LATEST-BIOCONDUCTOR-PACKAGE-VERSION and BIOCONDUCTOR-URI. (description->package): Pass package type to URI helper procedure; include package type in annotation or experiment packages from Bioconducter. Ricardo Wurmus
2019-08-16build-system/r: bioconductor-uri: Take optional package type....* guix/build-system/r.scm (bioconductor-uri): Take optional TYPE argument to return annotation or experiment URLs. Ricardo Wurmus
2019-08-16machine: Use 'become-command'....* gnu/machine/ssh.scm (managed-host-remote-eval): Pass an appropriate 'become-command' to 'remote-eval'. * guix/ssh.scm (remote-authorize-signing-key): Add optional 'become-command' argument. All callers changed. Jakob L. Kreuze
2019-08-16remote: Resolve missing 'G_'....* guix/remote.scm: Require (guix i18n). Jakob L. Kreuze
2019-08-16gnu: linux-libre: Update to 5.2.9....* gnu/packages/linux.scm (linux-libre-5.2-version): Update to 5.2.9. (linux-libre-5.2-pristine-source)[hash]: Update hash. Mark H Weaver
2019-08-16gnu: linux-libre@4.19: Update to 4.19.67....* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.67. (linux-libre-4.19-pristine-source)[hash]: Update hash. Mark H Weaver
2019-08-16gnu: linux-libre@4.14: Update to 4.14.139....* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.139. (linux-libre-4.14-pristine-source)[hash]: Update hash. Mark H Weaver
2019-08-15gnu: Add swagger-diff....* gnu/packages/ruby.scm (swagger-diff): New variable. Jelle Licht
2019-08-15gnu: Add ruby-json-schema....* gnu/packages/ruby.scm (ruby-json-schema): New variable. Jelle Licht
2019-08-15gnu: einstein: Use mirror for source download....* gnu/packages/games.scm (einstein)[source]: Use 'mirror' syntax. Efraim Flashner
2019-08-15gnu: Remove python2-internetarchive....This trivial package fails to build and has no reverse dependencies. * gnu/packages/web.scm (python2-internetarchive): Remove variable. (python-internetarchive)[properties]: Remove. Marius Bakke
2019-08-15gnu: python-responses: Update to 0.10.6....* gnu/packages/python-web.scm (python-responses): Update to 0.10.6. Marius Bakke
2019-08-15gnu: Add r-cistopic....* gnu/packages/bioconductor.scm (r-cistopic): New variable. Ricardo Wurmus
2019-08-15gnu: Add r-rcistarget....* gnu/packages/bioconductor.scm (r-rcistarget): New variable. Ricardo Wurmus
2019-08-15gnu: Add r-lda....* gnu/packages/cran.scm (r-lda): New variable. Ricardo Wurmus
2019-08-15gnu: Add r-liger....* gnu/packages/cran.scm (r-liger): New variable. Ricardo Wurmus
2019-08-15gnu: Add r-patchwork....* gnu/packages/cran.scm (r-patchwork): New variable. Ricardo Wurmus
2019-08-15gnu: Add r-rann-l1....* gnu/packages/cran.scm (r-rann-l1): New variable. Ricardo Wurmus
2019-08-15Revert "gnu: libinput: Update to 1.14.0."...This reverts commit dfdd7380a164217fec6bca0f91ebcf32ade33cb4. libinput-minimal causes too many rebuilds. Rutger Helling
2019-08-15gnu: libinput: Update to 1.14.0....* gnu/packages/freedesktop.scm (libinput): Update to 1.14.0. Rutger Helling
2019-08-15gnu: Add itk-snap....* gnu/packages/image-processing.scm (itk-snap): New variable. Ricardo Wurmus
2019-08-15gnu: Add insight-toolkit-4.12....* gnu/packages/image-processing.scm (insight-toolkit-4.12): New variable. Ricardo Wurmus
2019-08-15gnu: Add insight-toolkit-4....* gnu/packages/image-processing.scm (insight-toolkit-4): New variable. Ricardo Wurmus
2019-08-15gnu: Add insight-toolkit....* gnu/packages/image-processing.scm (insight-toolkit): New variable. Ricardo Wurmus
2019-08-15gnu: Add vxl-1....* gnu/packages/image-processing.scm (vxl-1): New variable. Ricardo Wurmus
2019-08-15gnu: Add vxl....* gnu/packages/image-processing.scm (vxl): New variable. Ricardo Wurmus
2019-08-15gnu: Add vtk-6....* gnu/packages/image-processing.scm (vtk-6): New variable. Ricardo Wurmus
2019-08-15remote: Use (%daemon-socket-uri) rather than hard-coded path....* guix/remote.scm (remote-eval): Use (%daemon-socket-uri) as the default value of 'socket-name' rather than hard-coded path. Jakob L. Kreuze
2019-08-15doc: Add description of 'build-locally?'....* doc/guix.texi (Invoking guix deploy): Add section describing the 'build-locally?' field of 'managed-host-environment-type'. Jakob L. Kreuze
2019-08-15machine: Automatically authorize the coordinator's signing key....* guix/ssh.scm (remote-authorize-signing-key): New variable. * gnu/machine/ssh.scm (deploy-managed-host): Authorize coordinator's signing key before any invocations of 'remote-eval'. (deploy-managed-host): Display an error if a signing key does not exist. * doc/guix.texi (Invoking guix deploy): Remove section describing manual signing key authorization. (Invoking guix deploy): Add section describing the 'authorize?' field. Jakob L. Kreuze
2019-08-15machine: Implement 'roll-back-machine'....* gnu/machine.scm (roll-back-machine, &deploy-error, deploy-error?) (deploy-error-should-roll-back) (deploy-error-captured-args): New variable. * gnu/machine/ssh.scm (roll-back-managed-host): New variable. * guix/scripts/deploy.scm (guix-deploy): Roll-back systems when a deployment fails. Jakob L. Kreuze
2019-08-15machine: Allow non-root users to deploy....* doc/guix.texi (Invoking guix deploy): Add section describing prerequisites for deploying as a non-root user. * guix/remote.scm (remote-pipe-for-gexp): New optional 'become-command' argument. (%remote-eval): New optional 'become-command' argument. (remote-eval): New 'become-command' keyword argument. * guix/ssh.scm (remote-inferior): New optional 'become-command' argument. (inferior-remote-eval): New optional 'become-command' argument. (remote-authorize-signing-key): New optional 'become-command' argument. * gnu/machine/ssh.scm (machine-become-command): New variable. (managed-host-remote-eval): Invoke 'remote-eval' with the '#:become-command' keyword. (deploy-managed-host): Invoke 'remote-authorize-signing-key' with the '#:become-command' keyword. Jakob L. Kreuze
2019-08-14remote: Remove '--system' argument....* gnu/services.scm (activation-script): Return a <program-file> rather than a <scheme-file>. * gnu/deploy.scm (guix-deploy): Remove handling for '--system'. (show-help): Remove documentation for '--system'. (%default-options): Remove default setting for 'system'. Jakob L. Kreuze
2019-08-14remote: Build derivations appropriate for the remote's...* gnu/machine/ssh.scm (machine-ssh-configuration): Add 'system' field. (managed-host-remote-eval): Pass 'system' field to 'remote-eval'. (machine-check-building-for-appropriate-system): New variable. (check-deployment-sanity): Add call to 'machine-check-building-for-appropriate-system'. * doc/guix.texi (Invoking guix deploy): Describe new 'system' field. * guix/ssh.scm (remote-system): New variable. * guix/remote.scm (remote-eval): Use result of 'remote-system' when lowering the G-Expression. (remote-eval): Add 'system' keyword argument. (trampoline): Return a <program-file> rather than a <scheme-file>. Jakob L. Kreuze
2019-08-14gnu: mingw: Add x86_64 support....This patch parameterizes previously hard-coded instances of i686-w64-mingw32, adding support for x86_64-w64-mingw32. * gnu/packages/mingw.scm (make-mingw-w64): New procedure. (mingw-w64-i686, mingw-w64-x86_64): New variables. (%mingw-triplet): Remove. (mingw-w64): Update to point to 'mingw-w64-i686'. * gnu/packages/cross-base.scm (cross-gcc): Use 'libc' keyword argument if specified, instead of treating it as a boolean. (native-libc): Return the correct mingw-w64 depending on machine specified in target. * gnu/packages/bootstrap.scm (glibc-dynamic-linker): Add "x86_64-mingw". * gnu/build/cross-toolchain.scm (set-cross-path/mingw): Replace hardcoded 'i686-w64-mingw32' instances with 'target' keyword argument. (cross-gcc-build-phases): Update accordingly; use 'target-mingw?' implementation of target checking and add commentary. * gnu/ci.scm (%cross-targets): Add "x86_64-w64-mingw32". Carl Dong
2019-08-13gnu: onionshare: Upgrade to 2.1....* gnu/packages/tor.scm (onionshare): Upgrade to 2.1. [arguments]: Rename "tests" phase to "check". Set home directory for tests. Remove reference to closed upstream bug. [inputs]: Add python-pycrypto and python-pysocks. [license]: Remove bsd-3 license; relevant file no longer present. Eric Bavier
2019-08-13gnu: Blender: Use opensubdiv....Fixes <https://bugs.gnu.org/36977>. * gnu/packages/graphics.scm (blender)[inputs]: Add opensubdiv. [arguments]: Add "-DWITH_OPENSUBDIV=ON" to #:configure-flags. Signed-off-by: Leo Famulari <leo@famulari.name> Carlo Zancanaro
2019-08-13gnu: Add opensubdiv....* gnu/packages/graphics.scm (opensubdiv): New variable. Signed-off-by: Leo Famulari <leo@famulari.name> Carlo Zancanaro
2019-08-13Merge branch 'staging'Marius Bakke
2019-08-13gnu: xapian: Update to 1.4.12....* gnu/packages/search.scm (xapian, python-xapian-bindings): Update to 1.4.12. Marius Bakke
2019-08-13gnu: ccid: Update to 1.4.31....* gnu/packages/security-token.scm (ccid): Update to 1.4.31. Marius Bakke
2019-08-13gnu: zathura-pdf-mupdf: Update to 0.3.5....* gnu/packages/pdf.scm (zathura-pdf-mupdf): Update to 0.3.5. Marius Bakke
2019-08-13gnu: mupdf: Update to 1.16.1....* gnu/packages/pdf.scm (mupdf): Update to 1.16.1. Marius Bakke
2019-08-13gnu: git: Update to 2.22.1....* gnu/packages/version-control.scm (git): Update to 2.22.1. Tobias Geerinckx-Rice
2019-08-13gnu: tremc: Update to 0.9.1-0.4d50dab....* gnu/packages/bittorrent.scm (tremc): Update to 0.9.1-0.4d50dab. Leo Famulari
2019-08-13gnu: emacs-relint: Update to 1.10....* gnu/packages/emacs-xyz.scm (emacs-relint): Update to 1.10. Nicolas Goaziou
2019-08-13gnu: scribus: Update to 1.5.5....* gnu/packages/scribus.scm (scribus): Update to 1.5.5. [source]: Remove unnecessary patches and snippet. [description]: Change freetype to FreeType. * gnu/packages/patches/scribus-poppler.patch: Remove file. * gnu/local.mk: Apply removal. Nicolas Goaziou
2019-08-13gnu: Add emacs-ebdb....* gnu/packages/emacs-xyz.scm (emacs-ebdb): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Amin Bandali
2019-08-13gnu: emacs-inf-ruby: Update to 2.5.2....* gnu/packages/emacs-xyz.scm (emacs-inf-ruby): Update to 2.5.2. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Brian Leung