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2022-01-10gnu: rust-v-frame-0.2: Update to 0.2.5....* gnu/packages/crates-io.scm (rust-v-frame-0.2): Update to 0.2.5. [skip-build?]: Remove argument. [cargo-inputs]: Add rust-rust-hawktracer-0.7 and rust-rayon-1. Maxim Cournoyer
2022-01-10gnu: Add rust-rustc-version-0.4....* gnu/packages/crates-io.scm (rust-rustc-version-0.4): New variable. (rust-rustc-version-0.3): Inherit from the above. Maxim Cournoyer
2022-01-10gnu: Add rust-concolor-control....* gnu/packages/crates-io.scm (rust-concolor-control): New variable. Maxim Cournoyer
2022-01-10gnu: Add rust-concolor-query....* gnu/packages/crates-io.scm (rust-concolor-query): New variable. Maxim Cournoyer
2022-01-10gnu: Add rust-cfg-expr-0.8....* gnu/packages/crates-io.scm (rust-cfg-expr-0.8): New variable. Maxim Cournoyer
2022-01-10gnu: mozjs-78: Disable rust-simd to workaround a build failure....* gnu/packages/gnuzilla.scm (mozjs-78) [configure-flags]: Disable rust-simd to avoid a build failure that occurs when Rust is newer than 1.54.0. Maxim Cournoyer
2022-01-10build/python: Improve error output in sanity check....Instead of printing the "str()" representation of the excaption, print the "repr()" representation. This will print the name of the exception and thus ease understanding the actual error. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Hartmut Goebel
2022-01-10gnu: rust: Use rust-1.57.0....* gnu/packages/rust.scm (rust-1.54): Make it a private variable. Move definition to... (rust-1.57): ... here. (rust-1.55, rust-1.56): Make private. * gnu/packages/shells.scm (nushell)[rust]: Remove argument. Maxim Cournoyer
2022-01-10gnu: simple-scan: Add python to native inputs....* gnu/packages/gnome.scm (simple-scan)[native-inputs]: Add python. Maxim Cournoyer
2022-01-10gnu: gnome-calculator: Add python to native inputs....* gnu/packages/gnome.scm (gnome-calculator)[native-inputs]: Add python. Maxim Cournoyer
2022-01-10gnu: gnome-screenshot: Add python to native inputs....* gnu/packages/gnome.scm (gnome-screenshot)[native-inputs]: Add python. Maxim Cournoyer
2022-01-10gnu: file-roller: Add python to native inputs....* gnu/packages/gnome.scm (file-roller)[native-inputs]: Add python. Maxim Cournoyer
2022-01-10gnu: python-pandas: Update to 1.3.5....* gnu/packages/python-science.scm (python-pandas): Update to 1.3.5. [phases]{check}: Add a reference to the network accessing tests issue, now reported upstream. Reinstate the excelwriter tests. [propagated-inputs]: Add python-xlsxwriter. [native-inputs]: Remove python-nose. Maxim Cournoyer
2022-01-10gnu: python-xlwt: Add comment about maintainership of the package....The package appears to be abandoned. * gnu/packages/python-xyz.scm (python-xlwt): Add comment. Maxim Cournoyer
2022-01-10gnu: python-openpyxl: Update to 3.0.9....* gnu/packages/python-xyz.scm (python-openpyxl): Update to 3.0.9. Maxim Cournoyer
2022-01-10gnu: python-xlrd: Update to 2.0.1....* gnu/packages/python-xyz.scm (python-xlrd): Update to 2.0.1. [source]: Use git-fetch. [arguments]: Delete field. [native-inputs]: Add python-pytest. Maxim Cournoyer
2022-01-10gnu: mutter: Add python to native inputs....* gnu/packages/gnome.scm (mutter)[native-inputs]: Add python. Maxim Cournoyer
2022-01-10gnu: libgweather: Add python to native inputs....* gnu/packages/gnome.scm (libgweather)[native-inputs]: Add python. Maxim Cournoyer
2022-01-10gnu: baobab: Add python to native inputs....* gnu/packages/gnome.scm (baobab)[native-inputs]: Add python. Maxim Cournoyer
2022-01-10gnu: python-pytest-timeout: Update to 2.0.2....* gnu/packages/check.scm (python-pytest-timeout): Update to 2.0.2. Maxim Cournoyer
2022-01-10gnu: binutils: Fix CVE-2021-45078....This is for the release branch. Should we also use a graft for the master branch? It would be even better if we could add a binutils-next package that users could install, in my opinion. * gnu/packages/patches/binutils-CVE-2021-45078.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/base.scm (binutils)[source]: Use it. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Leo Famulari
2022-01-10gnu: glib: Update to 2.70.2....* gnu/packages/glib.scm (glib): Update to 2.70.2. Maxim Cournoyer
2022-01-10gnu: meson: Update to 0.60.3....* gnu/packages/build-tools.scm (gn): Update to 0.60.3. Maxim Cournoyer
2022-01-10gnu: glibmm: Update to 2.70.0 and apply guix style....* gnu/packages/glib.scm (glibmm): Update to 2.70.0. [native-inputs]: Use new style. Maxim Cournoyer
2022-01-10gnu: cpuid: Remove obsolete file permissions change....* gnu/packages/linux.scm (cpuid)[arguments]<#:phases>{fix-makefile}: Remove Makefile gzip permissions patch. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Sarah Morgensen
2022-01-10gnu: pre-commit: Remove obsolete phase....* gnu/packages/version-control.scm (pre-commit)[arguments]<#:phases>: Remove 'make-gz-writable phase. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Sarah Morgensen
2022-01-10gnu: go-github-com-prometheus-common: Remove obsolete phase....* gnu/packages/syncthing.scm (go-github-com-prometheus-common) [arguments]<#:phases>: Remove 'make-gzip-archive-writable phase. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Sarah Morgensen
2022-01-10gnu: python-pdfminer-six: Remove obsolete phase....* gnu/packages/python-xyz.scm (python-pdfminer-six)[arguments] <#:phases>: Remove 'make-files-writable phase. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Sarah Morgensen
2022-01-10gnu: arcanist: Remove obsolete phase....* gnu/packages/phabricator.scm (arcanist)[arguments]<#:phases>: Remove 'make-compressed-files-writable phase. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Sarah Morgensen
2022-01-10gnu: helm: Remove obsolete phase....* gnu/packages/music.scm (helm)[arguments]<#:phases>: Remove 'make-gz-files-writable phase. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Sarah Morgensen
2022-01-10gnu: lmms: Remove obsolete phase....* gnu/packages/music.scm (lmms)[arguments]<#:phases>: Remove 'make-manpages-writable phase. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Sarah Morgensen
2022-01-10gnu: jalv-select: Remove obsolete phase....* gnu/packages/music.scm (jalv-select)[arguments]<#:phases>: Remove 'make-manpages-writable phase. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Sarah Morgensen
2022-01-10gnu: python-scikit-learn: Remove obsolete phase....* gnu/packages/machine-learning.scm (python-scikit-learn)[arguments] <#:phases>: Remove 'make-files-writable phase. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Sarah Morgensen
2022-01-10gnu: go-ipfs: Remove obsolete phase....* gnu/packages/ipfs.scm (go-ipfs)[arguments]<#:phases>: Remove 'make-files-writable phase. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Sarah Morgensen
2022-01-10gnu: python-plotly: Remove obsolete phase....* gnu/packages/graph.scm (python-plotly)[arguments]<#:phases>: Remove 'make-files-writable phase. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Sarah Morgensen
2022-01-10gnu: go-github-com-gdamore-tcell: Remove obsolete phase....* gnu/packages/golang.scm (go-github-com-gdamore-tcell)[arguments] <#:phases>: Remove 'make-files-writable phase. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Sarah Morgensen
2022-01-10gnu: go-github-com-docker-distribution: Remove obsolete phase....* gnu/packages/golang.scm (go-github-com-docker-distribution)[arguments] <#:phases>: Remove 'make-gzip-archive-writable phase. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Sarah Morgensen
2022-01-10gnu: go-golang-org-x-crypto: Remove obsolete phase....* gnu/packages/golang.scm (go-golang-org-x-crypto)[arguments]<#:phases>: Remove 'make-gzip-archive-writable phase. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Sarah Morgensen
2022-01-10gnu: po4a: Remove obsolete phase....* gnu/packages/gettext.scm (po4a)[arguments]<#:phases>: Remove 'make-compressed-files-writable phase. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Sarah Morgensen
2022-01-10gnu: emacs: Remove obsolete phase....* gnu/packages/emacs.scm (emacs)[arguments]<#:phases>: Remove 'make-compressed-files-writable phase. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Sarah Morgensen
2022-01-10gnu: cups-minimal: Remove obsolete phase....* gnu/packages/cups.scm (cups-minimal)[arguments]<#:phases>: Remove 'make-manpages-writable phase. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Sarah Morgensen
2022-01-10gnu: clipper: Remove obsolete phase....* gnu/packages/bioinformatics.scm (clipper)[arguments]<#:phases>: Remove 'make-files-writable phase. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Sarah Morgensen
2022-01-10gnu: python-biom-format: Remove obsolete phase....* gnu/packages/bioinformatics.scm (python-biom-format)[arguments] <#:phases>: Remove 'make-files-writable phase. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Sarah Morgensen
2022-01-10build-system/gnu: Make gzip files writable before resetting timestamps....guix/build/gnu-build-system.scm (reset-gzip-timestamps): Ensure gzip files are writable before resetting their timestamps. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Sarah Morgensen
2022-01-10gnu: tbb-2020: Use ld.gold to work around segfaults in check phase....* gnu/packages/tbb.scm (tbb-2020) [configure-flags]: Use -fuse-ld=gold in CFLAGS. [native-inputs]: Add ld-gold-wrapper. Maxim Cournoyer
2022-01-10gnu: python-igraph: Update to 0.9.8....* gnu/packages/graph.scm (python-igraph): Update to 0.9.8. [origin]: Fetch from git. [configure-flags]: Delete argument. [phases]{build}: No longer override phase. {check}: Preserve ordering and streamline. {specify-libigraph-location}: New phase. [native-inputs]: Remove pkg-config. [home-page]: Update. Maxim Cournoyer
2022-01-10gnu: igraph: Update to 0.9.5....* gnu/packages/graph.scm (igraph): Update to 0.9.5. [source]: Add snippet to fully unbundle. [build-system]: Use cmake-build-system. [configure-flags]: Replace all by just '-DBUILD_SHARED_LIBS=ON'. [native-inputs]: Add pkg-config. [inputs]{zlib}: Delete input. {arpack-ng, plfit, suitesparse}: New inputs. Maxim Cournoyer
2022-01-10gnu: Add plfit....* gnu/packages/graph.scm (plfit): New variable. Maxim Cournoyer
2022-01-10gnu: python-pysam: Update to 0.18.0....* gnu/packages/bioinformatics.scm (python-pysam): Update to 0.18.0. [source]: Add FIXME to clarify bundled libraries in use. [phases]{check}: Streamline. [propagated-inputs]: Use latest htslib (1.14). [native-inputs]: Use latest samtools and bcftools (1.14). Remove python-nose. Maxim Cournoyer
2022-01-10gnu: bcftools: Update to 1.14....* gnu/packages/bioinformatics.scm (bcftools): Update to 1.14. (bcftools-1.12): New variable. (bcftools-1.10): Use package/inherit and delete trailing #t. [name]: Delete field. Maxim Cournoyer