| Age | Commit message (Expand) | Author |
|---|
| 2022-05-31 | gnu: Remove bamm....* gnu/packages/bioinformatics.scm (bamm): Delete variable.
| Maxim Cournoyer |
| 2022-05-31 | gnu: Remove python2-pybedtools....* gnu/packages/bioinformatics.scm (python2-pybedtools): Delete variable.
| Maxim Cournoyer |
| 2022-05-31 | gnu: Remove python2-htseq....* gnu/packages/bioinformatics.scm (python2-htseq): Delete variable.
| Maxim Cournoyer |
| 2022-05-31 | gnu: Remove pepr....* gnu/packages/bioinformatics.scm (pepr): Delete variable.
| Maxim Cournoyer |
| 2022-05-31 | gnu: tetoolkit: Update to 2.2.1b....* gnu/packages/bioinformatics.scm (tetoolkit): Update to 2.2.1b.
[python]: Delete argument.
[phases]: Delete trailing #t.
{make-writable}: Delete phase.
{adjust-requirements}: New phase.
{patch-invocations}: Use search-input-file.
{wrap-program}: Use search-input-file.
[inputs]: Remove python2-argparse. Replace python2-pysam with python-pysam.
[home-page]: Update URL.
| Maxim Cournoyer |
| 2022-05-31 | gnu: Remove python2-pybigwig....* gnu/packages/bioinformatics.scm (python2-pybigwig): Delete variable.
| Maxim Cournoyer |
| 2022-05-31 | gnu: Remove ribodiff....* gnu/packages/bioinformatics.scm (ribodiff): Delete variable.
| Maxim Cournoyer |
| 2022-05-31 | gnu: Remove grit....* gnu/packages/bioinformatics.scm (grit): Delete variable.
| Maxim Cournoyer |
| 2022-05-31 | gnu: Remove python2-fastalite....* gnu/packages/bioinformatics.scm (python2-fastalite): Delete variable.
| Maxim Cournoyer |
| 2022-05-31 | gnu: Remove python2-pyaudio....* gnu/packages/audio.scm (python2-pyaudio): Delete variable.
| Maxim Cournoyer |
| 2022-05-31 | gnu: Remove raul-devel....* gnu/packages/audio.scm (raul-devel): Delete variable.
| Maxim Cournoyer |
| 2022-05-31 | gnu: Remove raul....* gnu/packages/audio.scm (raul): Delete variable.
| Maxim Cournoyer |
| 2022-05-31 | gnu: Remove ingen....* gnu/packages/music.scm (ingen): Delete variable.
| Maxim Cournoyer |
| 2022-05-31 | gnu: Remove python2-pyalsaaudio....* gnu/packages/audio.scm (python2-pyalsaaudio): Delete variable.
| Maxim Cournoyer |
| 2022-05-31 | gnu: Remove graphios....* gnu/packages/admin.scm (graphios): Delete variable.
| Maxim Cournoyer |
| 2022-05-31 | gnu: Remove python2-langkit....* gnu/packages/ada.scm (python2-langkit): Delete variable.
| Maxim Cournoyer |
| 2022-05-31 | gnu: Remove python-pytest-runner-2....* gnu/packages/check.scm (python-pytest-runner-2): Delete variable.
(python2-pytest-runner): Likewise.
| Maxim Cournoyer |
| 2022-05-31 | diagnostics: Fix typo about 0-indexed COL in location....* guix/diagnostics.scm (source-properties->location): The location column is
0-indexed, not 1-indexed (the same as in source-properties, so the code is
accurate).
| Maxim Cournoyer |
| 2022-05-31 | utils: Add a %guix-source-root-directory procedure....* guix/utils.scm (%guix-source-root-directory): New procedure.
| Maxim Cournoyer |
| 2022-05-31 | utils: Add a 'delete-expression' procedure....* guix/utils.scm: Fix copyright lines and order imports.
(edit-expression): Fix typo in doc. Add a new 'include-trailing-newline?'
keyword argument. Update doc.
(delete-expression): New procedure.
| Maxim Cournoyer |
| 2022-05-31 | etc/committer: Teach it how to commit package removal....* etc/committer.scm.in (hunk-types): New variable.
(<hunk>): Rename hunk-definition? getter to 'hunk-type'.
(diff-info): Mute a git warning by separating file names from arguments with
'--'. Rename the 'definitions?' variable to 'type'.
Use the 'addition type when a new package addition is detected, 'removal when
removed else #f.
(add-commit-message): Re-indent.
(remove-commit-message): New procedure.
(main)[definitions]: Make commit message conditional depending on whether it
is an addition or removal.
[changes]: Adjust indentation.
| Maxim Cournoyer |
| 2022-05-31 | etc/committer: Prefix (sxml xpath) symbols to avoid name conflict....This avoids a naming conflict for 'filter', provided by both (srfi srfi-1)
and (sxml xpath).
* etc/committer.scm.in: Use 'use-modules' instead of 'import', and use a
prefix for the (sxml xpath) module.
(new-sexp): Adjust accordingly.
(change-commit-message): Likewise.
| Maxim Cournoyer |
| 2022-05-31 | packages: Fix typo in package-superseded doc....* guix/packages.scm (package-superseded): Fix typo.
| Maxim Cournoyer |
| 2022-05-31 | gnu: icecat: Update to 91.10.0-guix0-preview1 [security fixes]....Includes fixes for CVE-2022-31736, CVE-2022-31737, CVE-2022-31738,
CVE-2022-31739, CVE-2022-31740, CVE-2022-31741, CVE-2022-31742, and
CVE-2022-31747.
* gnu/packages/gnuzilla.scm (%icecat-version, %icecat-build-id): Update.
(icecat-source): Update gnuzilla commit, base version, and hashes.
| Mark H Weaver |
| 2022-05-31 | gnu: ungoogled-chromium: Update to 102.0.5005.61-3....* gnu/packages/chromium.scm (%ungoogled-revision): Bump to latest.
(%ungoogled-origin): Update hash.
| Marius Bakke |
| 2022-05-31 | gnu: python-sip-4: Update to 4.19.25....* gnu/packages/qt.scm (python-sip-4): Update to 4.19.25.
| Efraim Flashner |
| 2022-05-31 | gnu: guile-ac-d-bus: Run test suite....* gnu/packages/patches/guile-ac-d-bus-fix-tests.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/guile-xyz.scm (guile-ac-d-bus)
[source]: Apply patch.
[phases]{check}: New phase.
[native-inputs]: Add bash-minimal.
| Maxim Cournoyer |
| 2022-05-31 | gnu: guile-ac-d-bus: Build and install info manual....* gnu/packages/guile-xyz.scm (guile-ac-d-bus)
[arguments]: Use gexps.
[phases]{build-doc, install-doc}: New phases.
[native-inputs]: Add texinfo.
| Maxim Cournoyer |
| 2022-05-31 | gnu: python-distributed: Update to 2022.05.2....* gnu/packages/python-science.scm (python-distributed): Update to 2022.05.2.
[arguments]: Remove 'sanity-check phase; adjust 'check phase.
[propagated-inputs]: Add python-urllib3.
[native-inputs]: Add python-pytest-timeout and python-flaky.
| Ricardo Wurmus |
| 2022-05-31 | gnu: r-haven: Fix build....* gnu/packages/cran.scm (r-haven)[arguments]: Adjust 'unbundle-readstat phase.
Reported-by: Jonas Freimuth.
| Ricardo Wurmus |
| 2022-05-31 | gnu: python-fsspec: Update to 2022.5.0....* gnu/packages/python-xyz.scm (python-fsspec): Update to 2022.5.0.
| Ricardo Wurmus |
| 2022-05-31 | image: Add fat32 support....* gnu/build/image.scm (make-vfat-image): Pass fs-bits as an argument and force
1kb logical sector size only if "ESP" flag is set.
(make-partition-image): Add "fat32" partition type, support explicit "fat16"
type with vfat alias.
* gnu/system/image.scm (partition->dos-type partition): Return file system IDs
for "fat16" and "fat32" partitions.
(partition->gpt-type partition): Ditto.
Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
| Pavel Shlyak |
| 2022-05-31 | gnu: emacs-helpful: Update to 0.19...* gnu/packages/patches/emacs-helpful-docstring-test.patch: New file.
* gnu/packages/emacs-xyz.scm (emacs-helpful): Update to 0.19.
[source]: Use the patch.
* gnu/local.mk (dist_patch_DATA): Register the patch.
Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
| yarl baudig |
| 2022-05-30 | gnu: gandi.cli: Fix by downgrading python-click....* gnu/packages/python-xyz.scm (python-click-7): New variable.
* gnu/packages/networking.scm (gandi.cli)[inputs]: Depend on python-click-7.
| Pierre Langlois |
| 2022-05-30 | gnu: python-click@8: Remove redundant package....The python-click package is already version 8.
* gnu/packages/python-xyz.scm (python-click-8): Remove variable.
(python-proselint)[propagated-inputs]: Depend on python-click.
| Pierre Langlois |
| 2022-05-30 | gnu: python-scanpy: Update to 1.9.1....* gnu/packages/bioinformatics.scm (python-scanpy): Update to 1.9.1.
[arguments]: Add phase 'set-numba-cache-dir; disable more broken tests.
[propagated-inputs]: Add python-dask and python-session-info; replace
python-louvain-0.7 with python-louvain.
| Ricardo Wurmus |
| 2022-05-30 | gnu: python-leidenalg: Update to 0.8.10....* gnu/packages/graph.scm (python-leidenalg): Update to 0.8.10.
[arguments]: Patch setup.py.
[native-inputs]: Remove python-setuptools; add python-setuptools-scm.
| Ricardo Wurmus |
| 2022-05-30 | gnu: python-dask: Update to 2022.05.2....* gnu/packages/python-xyz.scm (python-dask): Update to 2022.05.2.
| Ricardo Wurmus |
| 2022-05-30 | gnu: Add python-session-info....* gnu/packages/python-xyz.scm (python-session-info): New variable.
| Ricardo Wurmus |
| 2022-05-30 | gnu: non-sequencer: Update to 1.9.5-5.257ec59....* gnu/packages/music.scm (non-sequencer): Update to 1.9.5-5.257ec59.
[source]: Use fork as old repository is defunct; use git-file-name and
git-version.
[arguments]: Remove python-2; add phase to replace bundled waf.
[native-inputs]: Add python-waf.
(non-session-manager)[native-inputs]: Add python-waf.
(non-mixer)[inputs]: Add lv2 and lilv.
[native-inputs]: Add python-waf.
(non-timeline)[native-inputs]: Add python-waf.
| Ricardo Wurmus |
| 2022-05-30 | gnu: quodlibet: Correct wrappers....* gnu/packages/music.scm (quodlibet)[#:phases]: Rename ‘wrap-gi-typelib’ to
‘wrap-extra-paths’. Use ‘=’ for GI_TYPELIB_PATH. Add
‘GST_PLUGIN_SYSTEM_PATH’ with suffix binding.
| Liliana Marie Prikler |
| 2022-05-30 | gnu: calceph: Add 'release-monitoring-url' property....* gnu/packages/astronomy.scm (calceph)[properties]: New field.
| Ludovic Courtès |
| 2022-05-30 | gnu: Add calceph....* gnu/packages/astronomy.scm (calceph): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Sharlatan Hellseher |
| 2022-05-30 | gnu: emacs-vterm: Update to 0.0.1-1.b447235....* gnu/packages/emacs-xyz.scm (emacs-vterm): Update to 0.0.1-1.b447235.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Kyle Meyer |
| 2022-05-30 | gnu: rspamd: Update to 3.2...* gnu/packages/mail.scm (rspamd): Update to 3.2
I also added a new build option, that changes the LOCAL_CONFDIR variable to
/etc/rspamd. This allows for rspamd configuration via the /etc/rspamd/local.d
and override.d directories, which by default were located in the PREFIX which
is in /gnu/store.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| ykonai |
| 2022-05-30 | gnu: pre-commit: Update to 2.19.0....* gnu/packages/version-control.scm (pre-commit): Update to 2.19.0.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| jgart |
| 2022-05-30 | gnu: xpad: Update to 5.8.0....* gnu/packages/gnome.scm (xpad): Update to 5.8.0.
[inputs]: Replace gtksourceview-3 with gtksourceview.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Rene Saavedra |
| 2022-05-30 | gnu: casync: Update to 99559cd1....* gnu/packages/sync.scm (casync): Update to 99559cd1.
[source]: Remove patch.
[arguments]: Fix installation.
[native-inputs]: Add python.
[inputs]: Add eudev.
* gnu/packages/patches/casync-renameat2-declaration.patch: Delete file.
* gnu/local.mk: Remove it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Greg Hogan |
| 2022-05-30 | gnu: rsync: Update to 3.2.4....* gnu/packages/rsync.scm (rsync): Update to 3.2.4.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Greg Hogan |
| 2022-05-30 | gnu: GCC: Add cross environment variables patch to GCC 12....* gnu/packages/patches/gcc-12-cross-environment-variables.patch : New file.
* gnu/local.mk (dist_patch_DATA): Add
gcc-12-cross-environment-variables.patch.
* gnu/packages/cross-base.scm (cross-gcc)[source](patches): Apply the patch.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Morgan Smith |
