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2023-05-06gnu: mupdf: Simplify snippet.Timotej Lazar
* gnu/packages/pdf.scm (mupdf)[source]: Simplify code to remove unused thirdparty libs. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-05-06gnu: mupdf: Update to 1.22.0.Timotej Lazar
* gnu/packages/pdf.scm (mupdf): Update to 1.22.0. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-05-05gnu: git-crypt: Fix build issues on OpenSSL 3.Sergey Trofimov
* gnu/packages/version-control.scm (git-crypt)[arguments]: In 'build' phase, set 'CXXFLAGS'. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-05-05gnu: lttng-tools: Fix build failure.Olivier Dion
* gnu/packages/instrumentation.scm (lttng-tools) [native-inputs]: Add autoconf, automake, libtool. [arguments]: Add 'autoreconf build phase before 'configure. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-05-05gnu: bear: Build against 'abseil-cpp-cxxstd11'.Andrew Whatson
Fixes a linker error when building bear, caused by incompatibility between abseil-cpp used by bear and abseil-cpp-cxxstd11 used by grpc. * gnu/packages/build-tools.scm (bear)[native-inputs]: Use ABSEIL-CPP-CXXSTD11. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-05-05gnu: guile2.0-shepherd: Remove.Ludovic Courtès
Version 0.9.x of the Shepherd requires Guile >= 2.2. * gnu/packages/admin.scm (guile2.0-shepherd): Remove.
2023-05-05read-print: Recognize 'wrap-program' and 'wrap-script' as special forms.Ludovic Courtès
* guix/read-print.scm (%special-forms): Add 'wrap-program' and 'wrap-script'.
2023-05-05read-print: Correctly read "(. x)".Ludovic Courtès
* guix/read-print.scm (read-with-comments): Check whether REST is a pair before calling 'set-cdr!'. * tests/read-print.scm ("read-with-comments: half dot notation"): New test.
2023-05-05Revert "gnu: Add python-gimmemotifs."Ricardo Wurmus
This reverts commit dc8b3ebe5d4ba2a39c12f62d836963ffee1e4b47. python-gimmemotifs is not usable without proprietary third-party tools.
2023-05-05gnu: gcc-11: Fix patch-hurd-libpthread phase.Christopher Baines
It didn't work when it was introduced in 08acdd0765b5f4fbfafa699a823ea7985d4d35a7. * gnu/packages/gcc.scm (gcc-11)[arguments]: Remove the procedure arguments, and use %build-inputs rather than inputs. * gnu/packages/commencement.scm (gcc-boot0)[native-inputs]: Add hurd-patch, as this package inherits from gcc-11.
2023-05-05gnu: Add python-gimmemotifs.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-gimmemotifs): New variable.
2023-05-05gnu: Add python-norns.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-norns): New variable.
2023-05-05gnu: Add python-xdg.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-xdg): New variable.
2023-05-05gnu: Add python-qnorm.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-qnorm): New variable.
2023-05-05gnu: Add python-biofluff.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-biofluff): New variable.
2023-05-05gnu: Add python-genomepy.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-genomepy): New variable.
2023-05-05gnu: Add python-filelock-3.5.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-filelock-3.5): New variable.
2023-05-05gnu: Add python-logomaker.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-logomaker): New variable.
2023-05-05gnu: Add python-mysql-connector-python.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-mysql-connector-python): New variable.
2023-05-05gnu: Add protobuf-3.20.Ricardo Wurmus
* gnu/packages/protobuf.scm (protobuf-3.20): New variable.
2023-05-05gnu: Add python-palettable.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-palettable): New variable.
2023-05-05gnu: python-pyfaidx: Update to 0.7.2.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-pyfaidx): Update to 0.7.2.1. [build-system]: Use pyproject-build-system. [arguments]: Ignore tests that require large downloads. [native-inputs]: Remove python-six; add python-fsspec, python-pytest, python-pytest-cov, python-mock, and python-numpy.
2023-05-05news: Add 'de' translation.Florian Pelz
* etc/news.scm: Add German translation of 'with-configure-flag' entry.
2023-05-05gnu: python-sanic: Disable failing SSL tests.Lars-Dominik Braun
Best guess is that they check for broken behavior in one of the dependencies, which has changed. * gnu/packages/python-web.scm (python-sanic)[arguments]: Disable more tests.
2023-05-05gnu: python-gssapi: Update to 1.8.2.Lars-Dominik Braun
* gnu/packages/python-xyz.scm (python-gssapi): Update to 1.8.2. [native-inputs]: Add python-cython.
2023-05-05gnu: python-k5test: Update to 0.10.3.Lars-Dominik Braun
* gnu/packages/python-xyz.scm (python-k5test): Update to 0.10.3.
2023-05-05gnu: python-atpublic: Update to 3.1.1.Lars-Dominik Braun
* gnu/packages/python-check.scm (python-atpublic): Update to 3.1.1. [build-system]: Switch to pyproject-build-system. [arguments]: Remove #:phases, override build backend. [native-inputs]: Replace nose2 with pytest, add python-pdm-backend, python-sybil and python-pytest-cov.
2023-05-05gnu: Add python-pdm-backend.Lars-Dominik Braun
* gnu/packages/python-build.scm (python-pdm-backend): New variable.
2023-05-05gnu: guix: Update to dc5430c.Ludovic Courtès
* gnu/packages/package-management.scm (guix): Update to dc5430c.
2023-05-04gnu: python-fs: Remove indirect dependency on Rust when unsupported.Ludovic Courtès
This allows to build font-abattis-cantarell on aarch64-linux. * gnu/packages/python-xyz.scm (python-fs)[arguments]: Add #:tests?. [native-inputs]: Turn into the empty list when cross-compiling or when PYTHON-PYFTPDLIB is not supported.
2023-05-04gnu: psautohint: Remove unneeded dependencies.Ludovic Courtès
* gnu/packages/fontutils.scm (psautohint)[native-inputs]: Remove PYTHON-FS and PYTHON-PYTEST-RANDOMLY.
2023-05-04services: qemu-binfmt: Add more targets.Efraim Flashner
* gnu/services/virtualization.scm (%i486, %sparc64, %aarch64be, %xtensa, %xtensaeb, %microblaze, %microblazeel, %or1k, %hexagon, %loongson64): New variables. (%armeb): Correct family field. (%qemu-platforms): Add them.
2023-05-04services: earlyoom: Rotate log files.Efraim Flashner
* gnu/services/linux.scm (%earlyoom-log-rotation): New variable. (earlyoom-service-type): Add service-extension for log rotation.
2023-05-04gnu: vifm: Update to 0.13.Efraim Flashner
* gnu/packages/vim.scm (vifm): Update to 0.13. [arguments]: Adjust substitutions in custom 'patch-test-shebangs phase.
2023-05-04gnu: python-screed: Update to 1.1.2.Mădălin Ionel Patrașcu
* gnu/packages/bioinformatics.scm (python-screed): Update to 1.1.2. [build-system]: Use pyproject-build-system. [native-inputs]: Remove python-pytest. [inputs]: Remove python-bz2file. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2023-05-04gnu: Add python-goatools.Navid Afkhami
* gnu/packages/bioinformatics.scm (python-goatools): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2023-05-04gnu: Add r-rcircos.Navid Afkhami
* gnu/packages/cran.scm (r-rcircos): New variable.
2023-05-04build: Do not fail when '.git' is missing.Ludovic Courtès
This is a followup to a5d719012e0f5115aa89b767edc1fe1a3505915c. * Makefile.am (.git/hooks/pre-push): Add dash.
2023-05-04gnu: Add python-diff-cover.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-diff-cover): New variable.
2023-05-04gnu: Add python-loguru.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-loguru): New variable.
2023-05-04gnu: Add python-pytest-mypy-plugins.Ricardo Wurmus
* gnu/packages/check.scm (python-pytest-mypy-plugins): New variable.
2023-05-04gnu: Add python-chevron.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-chevron): New variable.
2023-05-04gnu: Add python-iteround.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-iteround): New variable.
2023-05-04build: Do not fail when 'git' is missing.Ludovic Courtès
This is a followup to 8b972da068708a8b17f3ab153ea940690ca49ca9. * Makefile.am (.git/config): Add dash.
2023-05-04gnu: airspyhf: Update to 1.6.8-1.40836c5.Guillaume Le Vaillant
* gnu/packages/radio.scm (airspyhf): Update to 1.6.8-1.40836c5.
2023-05-04gnu: linux-libre 5.15: Update to 5.15.110.Leo Famulari
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.110. (linux-libre-5.15-pristine-source): Update hash.
2023-05-04gnu: linux-libre 6.1: Update to 6.1.27.Leo Famulari
* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.27. (linux-libre-6.1-pristine-source): Update hash.
2023-05-04gnu: linux-libre: Update to 6.2.14.Leo Famulari
* gnu/packages/linux.scm (linux-libre-6.2-version): Update to 6.2.14. (linux-libre-6.2-pristine-source): Update hash.
2023-05-04news: Add entry for '--with-configure-flag'.Ludovic Courtès
* etc/news.scm: Add entry.
2023-05-04transformations: Add '--with-configure-flag'.Sarthak Shah
* guix/transformations.scm (transform-package-configure-flag): New procedure. (%transformation-options, %transformation-options) (show-transformation-options-help/detailed): Add it. * tests/transformations.scm ("options->transformation, with-configure-flag"): New test. * doc/guix.texi (Package Transformation Options): Document it. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
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