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2020-12-09gnu: r-shinyfiles: Update to 0.9.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-shinyfiles): Update to 0.9.0.
2020-12-09gnu: r-vegan: Update to 2.5-7.Ricardo Wurmus
* gnu/packages/cran.scm (r-vegan): Update to 2.5-7. [propagated-inputs]: Remove r-knitr. [native-inputs]: Add r-knitr.
2020-12-09gnu: r-ggpmisc: Update to 0.3.7.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggpmisc): Update to 0.3.7.
2020-12-09gnu: r-ggalluvial: Update to 0.12.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggalluvial): Update to 0.12.3.
2020-12-09gnu: r-v8: Update to 3.4.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-v8): Update to 3.4.0.
2020-12-09gnu: r-rticles: Update to 0.17.Ricardo Wurmus
* gnu/packages/cran.scm (r-rticles): Update to 0.17.
2020-12-09gnu: r-magrittr: Update to 2.0.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-magrittr): Update to 2.0.1.
2020-12-09import/utils: Fix conditional.Ricardo Wurmus
This is a follow-up to commit 45584061a9ebe961e2be08ee94c3fe8ad74e2713. * guix/import/utils.scm (package->definition): Use EQ? instead of = to compare truthiness; use ELSE instead of (#T).
2020-12-09gnu: r-d3r: Update to 0.9.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-d3r): Update to 0.9.1. [arguments]: Use esbuild for minification. [native-inputs]: Add source for D3 version 6; replace uglify-js with esbuild.
2020-12-09gnu: Add r-projpred.Ricardo Wurmus
* gnu/packages/cran.scm (r-projpred): New variable.
2020-12-09gnu: Add r-optimx.Ricardo Wurmus
* gnu/packages/cran.scm (r-optimx): New variable.
2020-12-09gnu: Add r-gamm4.Ricardo Wurmus
* gnu/packages/cran.scm (r-gamm4): New variable.
2020-12-09gnu: Add r-fds.Ricardo Wurmus
* gnu/packages/cran.scm (r-fds): New variable.
2020-12-09gnu: Add r-rainbow.Ricardo Wurmus
* gnu/packages/cran.scm (r-rainbow): New variable.
2020-12-09gnu: Add r-hdrcde.Ricardo Wurmus
* gnu/packages/cran.scm (r-hdrcde): New variable.
2020-12-09gnu: Add r-ash.Ricardo Wurmus
* gnu/packages/cran.scm (r-ash): New variable.
2020-12-09gnu: Add r-parallelly.Ricardo Wurmus
* gnu/packages/cran.scm (r-parallelly): New variable.
2020-12-09gnu: Add r-gitcreds.Ricardo Wurmus
* gnu/packages/cran.scm (r-gitcreds): New variable.
2020-12-09gnu: Add r-waldo.Ricardo Wurmus
* gnu/packages/cran.scm (r-waldo): New variable.
2020-12-09gnu: Add r-diffobj.Ricardo Wurmus
* gnu/packages/cran.scm (r-diffobj): New variable.
2020-12-09gnu: Add r-brio.Ricardo Wurmus
* gnu/packages/cran.scm (r-brio): New variable.
2020-12-09gnu: python-llfuse: Update to 1.3.8.Leo Famulari
* gnu/packages/python-xyz.scm (python-llfuse): Update to 1.3.8.
2020-12-09gnu: dealii: Update to 9.2.0.Eric Bavier
* gnu/packages/maths.scm (dealii): Update to 9.2.0.
2020-12-09gnu: Add r-restrserve.Eric Brown
* gnu/packages/cran.scm (r-restrserve): New variable. Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-12-09gnu: Add kiwix-desktop.Pierre Neidhardt
* gnu/packages/web.scm (kiwix-desktop): New variable.
2020-12-09gnu: Add kiwix-lib.Pierre Neidhardt
* gnu/packages/web.scm (kiwix-lib): New variable.
2020-12-09gnu: Add libzim.Pierre Neidhardt
* gnu/packages/web.scm (libzim): New variable.
2020-12-09gnu: Add emacs-helm-switch-to-repl.Pierre Neidhardt
* gnu/packages/emacs-xyz.scm (emacs-helm-switch-to-repl): New variable.
2020-12-09gnu: emacs-debbugs: Update to 0.27.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-debbugs): Update to 0.27.
2020-12-09gnu: pciutils: Fix compilation error on GNU/Hurd.Ludovic Courtès
* gnu/packages/patches/pciutils-hurd-fix.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/pciutils.scm (pciutils)[arguments]: Add 'apply-hurd-patch' phase when (hurd-target?) is true. [inputs]: Add "hurd-patch" entry when (hurd-target?) is true.
2020-12-09doc: Document 'advertise?' for 'guix-publish-configuration'.Ludovic Courtès
* doc/guix.texi (Base Services): Document the 'advertise?' field of 'guix-publish-configuration'.
2020-12-09services: guix-publish: Depend on 'avahi-daemon' when needed.Ludovic Courtès
* gnu/services/base.scm (guix-publish-shepherd-service): Add 'user-processes' to 'requirement'. When ADVERTISE? is true, also add 'avahi-daemon'.
2020-12-09services: avahi: Depend on 'user-processes'.Ludovic Courtès
* gnu/services/avahi.scm (avahi-shepherd-service): Add 'user-processes' to 'requirement'.
2020-12-09gnu: r-diffbind: Update to 3.0.8.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.0.8.
2020-12-09gnu: r-rhtslib: Propagate zlib.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-rhtslib)[inputs]: Move zlib from here... [propagated-inputs]: ...to here. (r-variantannotation, r-rsamtools, r-bamsignals, r-rhdf5, r-methylkit)[inputs]: Remove zlib. * gnu/packages/bioconductor.scm (r-diffbind, r-quasr, r-cytolib, r-ncdfflow, r-flowworkspace, r-seqbias)[inputs]: Remove zlib.
2020-12-09gnu: r-delayedmatrixstats: Update to 1.12.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.12.1. [propagated-inputs]: Add r-matrixgenerics.
2020-12-09gnu: r-gqtlstats: Update to 1.21.3.zimoun
* gnu/packages/bioinformatics.scm (r-gqtlstats): Update to 1.21.3.
2020-12-09gnu: r-gqtlbase: Update to 1.21.1.zimoun
Co-authored-by: Ricardo Wurmus <rekado@elephly.net> * gnu/packages/bioinformatics.scm (r-gqtlbase): Update to 1.21.1. [arguments]: Add phase to patch broken NAMESPACE file.
2020-12-09gnu: r-bigmelon: Update to 1.16.0.zimoun
* gnu/packages/bioconductor.scm (r-bigmelon): Update to 1.16.0.
2020-12-09gnu: r-watermelon: Update to 1.34.0.zimoun
* gnu/packages/bioconductor.scm (r-watermelon): Update to 1.34.0.
2020-12-09gnu: r-yarn: Update to 1.16.0.zimoun
* gnu/packages/bioconductor.scm (r-yarn): Update to 1.16.0.
2020-12-09gnu: r-quantro: Update to 1.24.0.zimoun
* gnu/packages/bioconductor.scm (r-quantro): Update to 1.24.0.
2020-12-09gnu: r-lumi: Update to 2.42.0.zimoun
* gnu/packages/bioconductor.scm (r-lumi): Update to 2.42.0.
2020-12-09gnu: r-methylumi: Update to 2.36.0.zimoun
* gnu/packages/bioconductor.scm (r-methylumi): Update to 2.36.0.
2020-12-09gnu: r-minfi: Update to 1.36.0.zimoun
* gnu/packages/bioconductor.scm (r-minfi): Update to 1.36.0.
2020-12-09gnu: Add r-catalyst.zimoun
* gnu/packages/bioconductor.scm (r-catalyst): New variable.
2020-12-09gnu: r-ggcyto: Update to 1.18.0.zimoun
* gnu/packages/bioconductor.scm (r-ggcyto): Update to 1.18.0.
2020-12-09gnu: r-scdd: Update to 1.14.0.zimoun
* gnu/packages/bioconductor.scm (r-scdd): Update to 1.14.0.
2020-12-09gnu: r-chipcomp: Update to 1.20.0.zimoun
* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.20.0.
2020-12-09gnu: r-pcatools: Update to 2.2.0.zimoun
* gnu/packages/bioconductor.scm (r-pcatools): Update to 2.2.0.
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