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2023-05-09gnu: r-ggpicrust2: Update to 1.6.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ggpicrust2): Update to 1.6.3.
2023-05-09gnu: r-biomartr: Update to 1.0.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biomartr): Update to 1.0.3.
2023-05-09gnu: r-profvis: Update to 0.3.8.Ricardo Wurmus
* gnu/packages/cran.scm (r-profvis): Update to 0.3.8. [propagated-inputs]: Add r-purrr, r-rlang, and r-vctrs.
2023-05-09gnu: r-arrow: Update to 12.0.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-arrow): Update to 12.0.0.
2023-05-09gnu: apache-arrow: Update to 12.0.0.Ricardo Wurmus
* gnu/packages/databases.scm (apache-arrow): Update to 12.0.0.
2023-05-09gnu: apache-arrow: Drop package labels.Ricardo Wurmus
* gnu/packages/databases.scm (apache-arrow)[inputs]: Drop labels.
2023-05-09gnu: apache-arrow: Use G-expressions.Ricardo Wurmus
* gnu/packages/databases.scm (apache-arrow)[arguments]: Use G-expressions to refer to inputs without assoc-ref.
2023-05-09gnu: python-leather: Update to 0.3.4.Tanguy Le Carrour
* gnu/packages/wireservice.scm (python-leather): Update to 0.3.4. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2023-05-09gnu: txr: Update to 286.Guillaume Le Vaillant
* gnu/packages/lisp.scm (txr): Update to 286.
2023-05-09gnu: Update sbcl-nclasses to 0.5.0.Pierre Neidhardt
* gnu/packages/lisp-xyz.scm (sbcl-nclasses): Update to 0.5.0. Signed-off-by: Pierre Neidhardt <mail@ambrevar.xyz>
2023-05-09Merge branch 'rust-team'Efraim Flashner
2023-05-09gnu: rust-bootstrap: Remove aarch64 as a supported architecture.Efraim Flashner
This is so that we can merge the branch, building rust for aarch64-linux on CI is very time intensive. * gnu/packages/rust.scm (rust-bootstrap)[supported-systems]: Remove aarch64-linux.
2023-05-09gnu: gcc: Update cpu tuning architectures.Efraim Flashner
* gnu/packages/gcc.scm (%gcc-7.5-armhf-micro-architectures): Add missing micro-architecture. (%gcc-10-armhf-micro-architectures): Adjust accordingly. (%gcc-11-aarch64-micro-architectures): Add missing micro-architecture. (%gcc-12-aarch64-micro-architectures, %gcc-12-armhf-micro-architectures, %gcc-12-x86_64-micro-architectures, %gcc-13-aarch64-micro-architectures, %gcc-13-armhf-micro-architectures, %gcc-13-x86_64-micro-architectures): New variables. (gcc-12)[properties]: Use new compiler-cpu-architectures. * guix/cpu.scm (cpu->gcc-architecture): Update entries for Intel, AMD, x86_64 fallback and aarch64.
2023-05-09gnu: gcc-12: Update to 12.3.0.Efraim Flashner
* gnu/packages/gcc.scm (gcc-12): Update to 12.3.0.
2023-05-09gnu: gimp: Build with librsvg-for-system.Efraim Flashner
* gnu/packages/gimp.scm (gimp)[inputs]: Replace librsvg with librsvg-for-system.
2023-05-09gnu: gegl: Build with librsvg-for-system.Efraim Flashner
* gnu/packages/gimp.scm (gegl)[inputs]: Replace librsvg with librsvg-for-system.
2023-05-08gnu: foot: Add search path for 'TERMINFO_DIRS'.Jelle Licht
* gnu/packages/terminals.scm (foot)[native-search-paths]: New field.
2023-05-08gnu: foot: Update to 1.14.0.Benjamin
* gnu/packages/terminals.scm (foot): Update to 1.14.0. Signed-off-by: Jelle Licht <jlicht@fsfe.org>
2023-05-08gnu: tllist: Update to 1.1.0.Benjamin
* gnu/packages/datastructures.scm (tllist): Update to 1.1.0. Signed-off-by: Jelle Licht <jlicht@fsfe.org>
2023-05-08gnu: emacs-tmr: Fix ffplay invocation.Nicolas Goaziou
This fixes <https://issues.guix.gnu.org/63350>. * gnu/packages/emacs-xyz.scm (emacs-tmr)[arguments]<#:phases>: Fix search string.
2023-05-08gnu: Add emacs-eweouz.Simon Josefsson
* gnu/packages/emacs-xyz.scm (emacs-eweouz): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-05-08gnu: guile-goblins: Update to 0.11.0.David Thompson
* gnu/packages/guile-xyz.scm (guile-goblins): Update to 0.11.0.
2023-05-08gnu: guile-openai: Update to 0.1-2.9265b64.Ricardo Wurmus
* gnu/packages/guile-xyz.scm (guile-openai): Update to 0.1-2.9265b64.
2023-05-08gnu: Add homer.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (homer): New variable.
2023-05-08Partly reinstate "doc: Update all menus."Maxim Cournoyer
This partly reinstates commit 9719d7d ("doc: Update all menus."), omitting the hunk touching doc/contributing.texi. * doc/guix.texi: Update all menus.
2023-05-08gnu: python-bleach: Don't vendor python-html5lib.Efraim Flashner
* gnu/packages/python-xyz.scm (python-bleach)[source]: Add snippet to remove vendored library and references to it. [propagated-inputs]: Add python-html5lib.
2023-05-08gnu: python-bleach: Update to 5.0.1.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-bleach): Update to 5.0.1. [build-system]: Use pyproject-build-system. [arguments]: Remove custom 'check phase.
2023-05-08gnu: Add r-seurat5.Ricardo Wurmus
* gnu/packages/cran.scm (r-seurat5): New variable.
2023-05-08gnu: Add r-seurat5object.Ricardo Wurmus
* gnu/packages/cran.scm (r-seurat5object): New variable.
2023-05-08gnu: python-bottleneck: Honor #:tests? flag.Efraim Flashner
* gnu/packages/python-science.scm (python-bottleneck)[arguments]: Adjust custom 'check phase to honor the #:tests? flag.
2023-05-08gnu: python-bottleneck: Update to 1.3.7.Efraim Flashner
* gnu/packages/python-science.scm (python-bottleneck): Update to 1.3.7.
2023-05-08gnu: python-astropy: Update to 5.2.2.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-astropy): Update to 5.2.2. [arguments]<phases>{check}: Skip 2 more failing tests. [native-inputs]: Add python-colorlog, python-h5py, python-pandas, python-pyarrow, python-pytest-astropy-header, python-scikit-image, python-scipy, python-timezonefinder. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-05-08gnu: python-pytest-mpl: Update to 0.16.1.Sharlatan Hellseher
* gnu/packages/python-check.scm (python-pytest-mpl): Update to 0.16.1. [build-system]: Use pyproject-build-system. [arguments]<phases>: Simplify phases by removing redundant modification and use <test-flags> instead. [propagated-inputs]: Add python-jinja2, python-packaging. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-05-08gnu: python-pytest-arraydiff: Update to 0.5.0.Sharlatan Hellseher
* gnu/packages/python-check.scm (python-pytest-arraydiff): Update to 0.5.0. [native-inputs]: Add python-setuptools-scm. [propagated-inputs]: Remove python-six. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-05-08gnu: python-pytest-remotedata: Update to 0.4.0.Sharlatan Hellseher
* gnu/packages/python-check.scm (python-pytest-remotedata): Update to 0.4.0. [build-system]: Use pyproject-build-system. [arguments]<phases>: Simplify by removing not required phase modification and use <test-flags> instead. [native-inputs]: Add python-setuptools-scm. [propagated-inputs]: Delete python-six, add python-packaging. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-05-08gnu: python-skyfield: Update to 1.46.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-skyfield): Update to 1.46. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-05-08gnu: python-jplephem: Update to 2.18.Sharlatan Hellseher
* gnu/packages/astronomy.scm (python-jplephem): Update to 2.18. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-05-08gnu: python-extension-helpers: Update to 1.0.0.Sharlatan Hellseher
* gnu/packages/python-xyz.scm (python-extension-helpers): Update to 1.0.0. [build-system]: Use pyproject-build-system. [arguments]<tests>: Disable them, as pytest can't load the test suite. [native-inputs]: Add python-setuptools-scm. [home-page]: Re-point to actual project home page. [synopsis]: Adjust it to cover actual project. [description]: ... as above. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-05-08gnu: python-pytest-astropy: Simplify package.Sharlatan Hellseher
* gnu/package/python-check.scm (python-pytest-astropy): Simplify package. [arguments]<phases>: Remove remove-requirement phase. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-05-08gnu: python-pytest-filter-subpackage: Update to 0.1.2.Sharlatan Hellseher
* gnu/packages/python-check.scm (python-pytest-filter-subpackage): Update to 0.1.2. [build-system]: Use pyproject-build-system. [arguments]: Drop no more required phases. [native-inputs]: Add python-setuptools-scm. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-05-08gnu: Add python-timezonefinder.Sharlatan Hellseher
* gnu/packages/time.scm (python-timezonefinder): New variable. * gnu/packages/geo.scm (h3-3, python-h3-3): New variables. The latest compatible versions to build python-timezonefinder. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-05-08gnu: Add python-h3.Sharlatan Hellseher
* gnu/packages/geo.scm (python-h3): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-05-08gnu: Sort use-module alphabetically in (gnu packages geo).Sharlatan Hellseher
* gnu/packages/geo.scm: Sort use-module alphabetically to ease maintenance. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-05-08gnu: Add h3.Sharlatan Hellseher
* gnu/packages/geo.scm (h3): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-05-08gnu: python-pytest-doctestplus: Update to 0.12.1.Sharlatan Hellseher
* gnu/packages/python-check.scm (python-pytest-doctestplus): Update to 0.12.1. [build-system]: Use pyproject-build-system. [arguments]<phases>: Remove modify-phases and add test-flags option instead. [native-inputs]: Add python-numpy. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-05-08gnu: tio: Update to 2.5.Raphaël Mélotte
* gnu/packages/terminals.scm (tio): Update to 2.5. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-05-08gnu: openttd-engine: Update to 13.1.Yovan Naumovski
* gnu/packages/games.scm (openttd-engine): Update to 13.1. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-05-08gnu: Add r-multibac.Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-multibac): New variable.
2023-05-07Revert "doc: Update all menus."Maxim Cournoyer
This reverts commit 9719d7d2b0733c57e30bff3180ff0fa25c34c66f. It breaks Guix pull, building the 'guix-manual' for reasons that currently escape me.
2023-05-07doc: Update all menus.Maxim Cournoyer
Automated via 'M-x texinfo-all-menus-update' in Emacs, and dropping the *Contributing menu removal, which is erroneously removed because defined in a different Texinfo file. * doc/guix.texi: Update all menus. * doc/contributing.texi (Submitting Patches): Likewise.