Age | Commit message (Collapse) | Author |
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* gnu/packages/bioconductor.scm (r-ggpicrust2): Update to 1.6.3.
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* gnu/packages/bioconductor.scm (r-biomartr): Update to 1.0.3.
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* gnu/packages/cran.scm (r-profvis): Update to 0.3.8.
[propagated-inputs]: Add r-purrr, r-rlang, and r-vctrs.
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* gnu/packages/cran.scm (r-arrow): Update to 12.0.0.
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* gnu/packages/databases.scm (apache-arrow): Update to 12.0.0.
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* gnu/packages/databases.scm (apache-arrow)[inputs]: Drop labels.
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* gnu/packages/databases.scm (apache-arrow)[arguments]: Use G-expressions to
refer to inputs without assoc-ref.
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* gnu/packages/wireservice.scm (python-leather): Update to 0.3.4.
Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
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* gnu/packages/lisp.scm (txr): Update to 286.
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* gnu/packages/lisp-xyz.scm (sbcl-nclasses): Update to 0.5.0.
Signed-off-by: Pierre Neidhardt <mail@ambrevar.xyz>
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This is so that we can merge the branch, building rust for aarch64-linux
on CI is very time intensive.
* gnu/packages/rust.scm (rust-bootstrap)[supported-systems]: Remove
aarch64-linux.
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* gnu/packages/gcc.scm (%gcc-7.5-armhf-micro-architectures): Add missing
micro-architecture.
(%gcc-10-armhf-micro-architectures): Adjust accordingly.
(%gcc-11-aarch64-micro-architectures): Add missing micro-architecture.
(%gcc-12-aarch64-micro-architectures, %gcc-12-armhf-micro-architectures,
%gcc-12-x86_64-micro-architectures, %gcc-13-aarch64-micro-architectures,
%gcc-13-armhf-micro-architectures, %gcc-13-x86_64-micro-architectures):
New variables.
(gcc-12)[properties]: Use new compiler-cpu-architectures.
* guix/cpu.scm (cpu->gcc-architecture): Update entries for Intel, AMD,
x86_64 fallback and aarch64.
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* gnu/packages/gcc.scm (gcc-12): Update to 12.3.0.
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* gnu/packages/gimp.scm (gimp)[inputs]: Replace librsvg with
librsvg-for-system.
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* gnu/packages/gimp.scm (gegl)[inputs]: Replace librsvg with
librsvg-for-system.
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* gnu/packages/terminals.scm (foot)[native-search-paths]: New field.
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* gnu/packages/terminals.scm (foot): Update to 1.14.0.
Signed-off-by: Jelle Licht <jlicht@fsfe.org>
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* gnu/packages/datastructures.scm (tllist): Update to 1.1.0.
Signed-off-by: Jelle Licht <jlicht@fsfe.org>
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This fixes <https://issues.guix.gnu.org/63350>.
* gnu/packages/emacs-xyz.scm (emacs-tmr)[arguments]<#:phases>: Fix search
string.
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* gnu/packages/emacs-xyz.scm (emacs-eweouz): New variable.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
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* gnu/packages/guile-xyz.scm (guile-goblins): Update to 0.11.0.
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* gnu/packages/guile-xyz.scm (guile-openai): Update to 0.1-2.9265b64.
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* gnu/packages/bioinformatics.scm (homer): New variable.
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This partly reinstates commit 9719d7d ("doc: Update all menus."), omitting the
hunk touching doc/contributing.texi.
* doc/guix.texi: Update all menus.
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* gnu/packages/python-xyz.scm (python-bleach)[source]: Add snippet to
remove vendored library and references to it.
[propagated-inputs]: Add python-html5lib.
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* gnu/packages/python-xyz.scm (python-bleach): Update to 5.0.1.
[build-system]: Use pyproject-build-system.
[arguments]: Remove custom 'check phase.
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* gnu/packages/cran.scm (r-seurat5): New variable.
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* gnu/packages/cran.scm (r-seurat5object): New variable.
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* gnu/packages/python-science.scm (python-bottleneck)[arguments]: Adjust
custom 'check phase to honor the #:tests? flag.
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* gnu/packages/python-science.scm (python-bottleneck): Update to 1.3.7.
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* gnu/packages/astronomy.scm (python-astropy): Update to 5.2.2.
[arguments]<phases>{check}: Skip 2 more failing tests.
[native-inputs]: Add python-colorlog, python-h5py, python-pandas,
python-pyarrow, python-pytest-astropy-header, python-scikit-image,
python-scipy, python-timezonefinder.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/python-check.scm (python-pytest-mpl): Update to 0.16.1.
[build-system]: Use pyproject-build-system.
[arguments]<phases>: Simplify phases by removing redundant modification
and use <test-flags> instead.
[propagated-inputs]: Add python-jinja2, python-packaging.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/python-check.scm (python-pytest-arraydiff): Update to
0.5.0.
[native-inputs]: Add python-setuptools-scm.
[propagated-inputs]: Remove python-six.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/python-check.scm (python-pytest-remotedata): Update to
0.4.0.
[build-system]: Use pyproject-build-system.
[arguments]<phases>: Simplify by removing not required phase
modification and use <test-flags> instead.
[native-inputs]: Add python-setuptools-scm.
[propagated-inputs]: Delete python-six, add python-packaging.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/astronomy.scm (python-skyfield): Update to 1.46.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/astronomy.scm (python-jplephem): Update to 2.18.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/python-xyz.scm (python-extension-helpers): Update to
1.0.0.
[build-system]: Use pyproject-build-system.
[arguments]<tests>: Disable them, as pytest can't load the test suite.
[native-inputs]: Add python-setuptools-scm.
[home-page]: Re-point to actual project home page.
[synopsis]: Adjust it to cover actual project.
[description]: ... as above.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/package/python-check.scm (python-pytest-astropy): Simplify package.
[arguments]<phases>: Remove remove-requirement phase.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/python-check.scm (python-pytest-filter-subpackage):
Update to 0.1.2.
[build-system]: Use pyproject-build-system.
[arguments]: Drop no more required phases.
[native-inputs]: Add python-setuptools-scm.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/time.scm (python-timezonefinder): New variable.
* gnu/packages/geo.scm (h3-3, python-h3-3): New variables. The latest
compatible versions to build python-timezonefinder.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/geo.scm (python-h3): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/geo.scm: Sort use-module alphabetically to ease
maintenance.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/geo.scm (h3): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/python-check.scm (python-pytest-doctestplus): Update to
0.12.1.
[build-system]: Use pyproject-build-system.
[arguments]<phases>: Remove modify-phases and add test-flags option
instead.
[native-inputs]: Add python-numpy.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/terminals.scm (tio): Update to 2.5.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/games.scm (openttd-engine): Update to 13.1.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/bioconductor.scm (r-multibac): New variable.
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This reverts commit 9719d7d2b0733c57e30bff3180ff0fa25c34c66f. It breaks Guix
pull, building the 'guix-manual' for reasons that currently escape me.
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Automated via 'M-x texinfo-all-menus-update' in Emacs, and dropping
the *Contributing menu removal, which is erroneously removed because defined
in a different Texinfo file.
* doc/guix.texi: Update all menus.
* doc/contributing.texi (Submitting Patches): Likewise.
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