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2017-04-30gnu: radicale: Update to 1.1.2 [fixes CVE-2017-8342].•••* gnu/packages/dav.scm (radicale): Update to 1.1.2. Leo Famulari
2017-04-30Revert "gnu: Move netsurf to web-browsers.scm."•••This change caused building Guix to fail with: 393: 1 [eval #<memoized glib-or-gtk-build-system> (# "3.6" "netsurf" . #)] This reverts commit a39ee1accb384fa4747a2a14d44616557419087f. Leo Famulari
2017-04-30gnu: Move netsurf to web-browsers.scm.•••* gnu/packages/web.scm: Move netsurf... * gnu/packages/web-browsers.scm: ...here. Kei Kebreau
2017-04-30gnu: glibc/linux: Fix build of glibc-intermediate.•••This is a follow-up to commit b2fd8f63679aa4f244c36fdca62f23c00b8eded9. * gnu/packages/base.scm (glibc/linux)[arguments]: Take patch from either native-inputs or just inputs; fix syntax error; report errors on patch failure. Ricardo Wurmus
2017-04-30gnu: femtolisp: Remove aarch64-linux from supported-architectures.•••* gnu/packages/lisp.scm (femtolisp)[supported-systems]: Remove aarch64-linux from supported-systems. Efraim Flashner
2017-04-30gnu: Add netcdf-fortran.•••* gnu/packages/maths.scm (netcdf-fortran): New variable. Thomas Danckaert
2017-04-30gnu: jemalloc: Disable transparent huge pages on non-Intel systems.•••* gnu/packages/jemalloc.scm (jemalloc)[arguments]: On non-Intel systems add '--disable-thp' to #:configure-flags. Adjust #:phases to remove offending test which incorrectly tests transparent huge pages. Efraim Flashner
2017-04-29python-sphinxcontrib-programoutput: Update to 0.10.•••* gnu/packages/python.scm (python-sphinxcontrib-programoutput): Update to 0.10. Christopher Allan Webber
2017-04-29gnu: xapian: Update to 1.4.4.•••* gnu/packages/search.scm (xapian): Update to 1.4.4. Marius Bakke
2017-04-29gnu: glibc/linux: Fix runtime crashes on i686 systems.•••* gnu/packages/patches/glibc-memchr-overflow-i686.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/commencement.scm (glibc-final-with-bootstrap-bash)[native-inputs]: Add the patch conditionally for i686 systems. * gnu/packages/base.scm (glibc/linux)[native-inputs]: Add the patch conditionally for i686 systems. [arguments]: Apply the patch conditionally on i686 systems. Ricardo Wurmus
2017-04-29gnu: lsof: Update to 4.89.•••* gnu/packages/lsof.scm (lsof): Update to 4.89. Efraim Flashner
2017-04-29gnu: lsof: Shorten 'install phase.•••* gnu/packages/lsof.scm (lsof)[arguments]: Use 'install-file during the 'install phase. Efraim Flashner
2017-04-29gnu: lsof: Use 'modify-phases' syntax.•••* gnu/packages/lsof.scm (lsof)[arguments]: Use 'modify-phases' syntax. Efraim Flashner
2017-04-29gnu: lsof: Add to mirror list.•••* gnu/packages/lsof.scm (lsof)[source]: Add to mirror list. Efraim Flashner
2017-04-29gnu: r-genomeinfodbdata: Fix source url.•••* gnu/packages/bioinformatics.scm (r-genomeinfodbdata)[source]: Use source uri and not bioconductor-uri shortener. Efraim Flashner
2017-04-29gnu: freetype: Fix CVE-2017-{8105,8287}.•••* gnu/packages/patches/freetype-CVE-2017-8105.patch, gnu/packages/patches/freetype-CVE-2017-8287.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/fontutils.scm (freetype)[replacement]: New field. (freetype/fixed): New variable. Leo Famulari
2017-04-29gnu: ocaml-qtest: Use ocaml-qcheck.•••* gnu/packages/ocaml.scm (ocaml-qtest)[propagated-inputs]: Add ocaml-qcheck. Julien Lepiller
2017-04-29gnu: Add ocaml-qcheck.•••* gnu/packages/ocaml.scm (ocaml-qcheck): New variable. Julien Lepiller
2017-04-29gnu: python-openid: Fix package.•••Fixes <https://bugs.gnu.org/26692>. * gnu/packages/python.scm (python-openid)[arguments]: Replace 'check phase. [propagated-inputs]: Add python-defusedxml. [native-inputs]: Add python-psycopg2, python-django. Danny Milosavljevic
2017-04-29gnu: ghostscript-with-cups: Avoid inheriting replacement field.•••This is a followup to commit a01f15759a00503101baa23af87cbd6095a1fbd6. * gnu/packages/cups.scm (ghostscript/cups)[replacement]: New field. Leo Famulari
2017-04-29gnu: radeontop: Update to 1.0.•••* gnu/packages/linux.scm (radeontop): Update to 1.0. [inputs]: Add libxcb. Tobias Geerinckx-Rice
2017-04-28gnu: ghostscript: Fix CVE-2017-8291.•••* gnu/packages/patches/ghostscript-CVE-2017-8291.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/ghostscript.scm (ghostscript)[replacement]: New field. (ghostscript/fixed): New variable. (ghostscript-with-x)[replacement]: New field. Leo Famulari
2017-04-28gnu: youtube-dl: Update to 2017.04.28.•••* gnu/packages/video.scm (youtube-dl): Update to 2017.04.28. Arun Isaac
2017-04-28gnu: Add enigma.•••* gnu/packages/games.scm (enigma): New variable. Ricardo Wurmus
2017-04-28gnu: Add xerces-c.•••* gnu/packages/xml.scm (xerces-c): New variable. Ricardo Wurmus
2017-04-28gnu: schismtracker: Update to 20170420.•••* gnu/packages/music.scm (schismtracker): Update to 20170420. Kei Kebreau
2017-04-28gnu: awscli: Add python-pyyaml input.•••Without this input, 'aws ec2 import-key-pair' doesn't work. * gnu/packages/python.scm (awscli)[propagated-inputs]: Add python-pyyaml. David Thompson
2017-04-28gnu: virt-manager: Update to 1.4.1.•••* gnu/packages/qemu.scm (virt-manager): Update to 1.4.1. 宋文武
2017-04-28gnu: python-libvirt: Update to 3.2.0.•••* gnu/packages/qemu.scm (python-libvirt, python2-libvirt): Update to 3.2.0. 宋文武
2017-04-28gnu: libvirt-glib: Update to 1.0.0.•••* gnu/packages/qemu.scm (libvirt-glib): Update to 1.0.0. 宋文武
2017-04-28gnu: libvirt: Update to 3.2.0.•••* gnu/packages/qemu.scm (libvirt): Update to 3.2.0. 宋文武
2017-04-28gnu: r-preprocesscore: Update to 1.38.0.•••* gnu/packages/statistics.scm (r-preprocesscore): Update to 1.38.0. Roel Janssen
2017-04-28gnu: r-msnid: Update to 1.10.0.•••* gnu/packages/bioinformatics.scm (r-msnid): Update to 1.10.0. Roel Janssen
2017-04-28gnu: r-msnbase: Update to 2.2.0.•••* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.2.0. Roel Janssen
2017-04-28gnu: r-pcamethods: Update to 1.68.0.•••* gnu/packages/bioinformatics.scm (r-pcamethods): Update to 1.68.0. Roel Janssen
2017-04-28gnu: r-mzid: Update to 1.14.0.•••* gnu/packages/bioinformatics.scm (r-mzid): Update to 1.14.0. Roel Janssen
2017-04-28gnu: r-vsn: Update to 3.44.0.•••* gnu/packages/bioinformatics.scm (r-vsn): [source]: Update to 3.44.0, [propagated-inputs]: Add r-hexbin. Roel Janssen
2017-04-28gnu: r-affy: Update to 1.54.0.•••* gnu/packages/bioinformatics.scm (r-affy): Update to 1.54.0. Roel Janssen
2017-04-28gnu: r-affyio: Update to 1.46.0.•••* gnu/packages/bioinformatics.scm (r-affyio): Update to 1.46.0. Roel Janssen
2017-04-28gnu: r-mzr: Update to 2.10.0.•••* gnu/packages/bioinformatics.scm (r-mzr): Update to 2.10.0. Roel Janssen
2017-04-28gnu: r-protgenerics: Update to 1.8.0.•••* gnu/packages/bioinformatics.scm (r-protgenerics): Update to 1.8.0. Roel Janssen
2017-04-28gnu: r-sva: Update to 3.24.0.•••* gnu/packages/bioinformatics.scm (r-sva): Update to 3.24.0. Roel Janssen
2017-04-28gnu: r-copywriter: Update to 2.8.0.•••* gnu/packages/bioinformatics.scm (r-copywriter): Update to 2.8.0. Roel Janssen
2017-04-28gnu: r-chipseq: Update to 1.26.0.•••* gnu/packages/bioinformatics.scm (r-chipseq): Update to 1.26.0. Roel Janssen
2017-04-28gnu: r-rhdf5: Update to 2.20.0.•••* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.20.0. Roel Janssen
2017-04-28gnu: r-tximport: Update to 1.4.0.•••* gnu/packages/bioinformatics.scm (r-tximport): Update to 1.4.0. Roel Janssen
2017-04-28gnu: r-mutationalpatterns: Update to 1.2.0.•••* gnu/packages/bioinformatics.scm (r-mutationalpatterns): [source]: Update to 1.2.0, [propagated-inputs]: Add r-bsgenome-hsapiens-1000genomes-hs37d5, r-bsgenome-hsapiens-ucsc-hg19. Roel Janssen
2017-04-28gnu: r-bamsignals: Update to 1.8.0.•••* gnu/packages/bioinformatics.scm (r-bamsignals): Update to 1.8.0. Roel Janssen
2017-04-28gnu: r-rhtslib: Update to 1.8.0.•••* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.8.0. Roel Janssen
2017-04-28gnu: r-zlibbioc: Update to 1.22.0.•••* gnu/packages/bioinformatics.scm (r-zlibbioc): Update to 1.22.0. Roel Janssen
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