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* gnu/packages/jupyter.scm (python-jupyter-server-mathjax): New variable.
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* gnu/packages/python-xyz.scm (python-nbconvert): Update to 6.5.0.
[arguments]: Use gexps.
[phases]{fix-paths-and-tests}: Rename to...
{fix-paths}: ... this. Find inputs via search-input-file. Patch inskcape
file name. Disable tests in...
{check}: ... this phase instead. Do not set HOME. Execute installed test
suite. Run tests in parallel. Disable and not
test_execute_widgets_from_nbconvert and test_execute_multiple_notebooks tests.
[inputs]: Add inkscape.
[native-inputs]: Delete python-pytest-cov and python-pytest-dependency. Use
new style.
[propagated-inputs]: Add python-beautifulsoup4. Reduce the texlive packages
part of the generated updmap.cfg input, moving them to regular propagated
inputs. Add texlive-unicode-math and texlive-lm-math.
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* gnu/packages/tex.scm (texlive-lm-math): New variable.
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* gnu/packages/tex.scm (texlive-unicode-math): New variable.
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* gnu/packages/python-xyz.scm (python-bleach): Update to 5.0.0.
[propagated-inputs]: Remove python-packaging and python-six. Add
python-tinycss2.
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* gnu/packages/jupyter.scm (python-nbclient): Update to 0.6.0.
[tests?]: Update comment.
[propagated-inputs]: Remove python-async-generator.
[native-inputs]: Delete field.
[description]: Fix spacing.
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* gnu/packages/python-xyz.scm (python-anyio)
[phases]{check}: Remove extraneous add-installed-pythonpath call.
Expound comment about IPv6 issues.
[native-inputs]: Use regular python-pytest. Replace python-pytest-trio by
python-trio.
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* gnu/packages/python-xyz.scm (python-ipyparallel-bootstrap): Update to 8.2.1.
[propagated-inputs]: Add python-entrypoints, python-psutil and python-tqdm.
Update python-tornado to version 6.
(python-ipyparallel)[phases]{check}: Override phase.
[native-inputs]: Remove python-mock and python-nose. Add
python-pytest-asyncio and python-pytest-tornado.
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* gnu/packages/python-check.scm (python-pytest-tornado): New variable.
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* gnu/packages/python-xyz.scm (python-ipykernel): Update to 6.13.0.
[origin]: Fix indentation.
[phases]: Use gexps.
{check}: Invoke pytest via tini
{set-python-file-name}: Adjust to use search-input-file.
[propagated-inputs]: Add python-debugpy, python-matplotlib-inline and
python-psutil.
[native-inputs]{python-nose}: Delete.
{python-ipyrallel-bootstrap}: New native input.
{python-pytest}: Replace with...
{python-pytest-bootstrap}: ... this.
{python-pytest-timeout, tini}: New native inputs.
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* gnu/packages/python-xyz.scm (python-jupyter-client-bootstrap): Make the base
package definition, moving most fields. Update to 7.2.2.
[propagated-inputs]: Add python-entrypoints and python-nest-asyncio.
(python-jupyter-client): Inherit from python-jupyter-client-bootstrap,
adjusting accordingly.
[native-inputs]: Add python-pytest-asyncio.
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* gnu/packages/python-xyz.scm (python-jupyter-core): Update to 4.10.0.
[phases]: Delete trailing #t.
{check}: Remove extraneous add-installed-pythonpath. Skip the
test_argv0, test_path_priority and test_not_on_path tests.
[propagated-inputs, native-inputs]: Fix indentation.
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* gnu/packages/python-xyz.scm (python-nest-asyncio): Update to 1.5.5.
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* gnu/packages/python-xyz.scm (python-ipyparallel): Morph into...
(python-ipyparallel-bootstrap): ... this, moving native inputs to a new
definition of...
(python-ipyparallel): ... this.
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* gnu/packages/check.scm (python-pytest-xdist-next): Update to 2.5.0.
[propagated-inputs]: replace python-pytest-forked with
python-pytest-forked-next.
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* gnu/packages/check.scm (python-pytest-forked-next): New variable.
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* gnu/packages/python-xyz.scm (python-greenlet): Update to 1.1.2.
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* gnu/packages/python-xyz.scm (python-debugpy): New variable.
* gnu/packages/patches/python-debugpy-unbundle-pydevd.patch: New file.
* gnu/local.mk: Register it.
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* gnu/packages/python-xyz.scm (python-pydevd): New variable.
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* gnu/packages/python-xyz.scm (python-trio): Update to 0.20.0.
[phases]{patch-sleep}: New phase.
[change-home]: Delete trailing #t.
{check}: Run tests in parallel. Disable the
test_cancel_scope_exit_doesnt_create_cyclic_garbage, test_ipython_exc_handler,
test_for_leaking_fds and test_static_tool_sees_all_symbols tests.
[native-inputs]: Add python-pytest-xdist.
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* gnu/packages/check.scm (python-pylint)
[phases]{check}: Add the '-n' option to use xdist with pytest.
[native-inputs]: Add python-pytest-xdist.
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* gnu/packages/python-xyz.scm (python-black): Update to 22.3.0.
[phases]{relax-version-requirements}: Delete phase.
{use-absolute-file-names}: Streamline phase.
{disable-broken-tests, remove-entrypoint}: Delete phases.
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* gnu/packages/xml.scm (python-untangle): New variable.
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* gnu/packages/python-web.scm (python-flask): Update to 2.1.1.
[propagated-inputs]: Add python-asgiref and python-importlib-metadata.
[home-page]: Update.
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* gnu/packages/python-xyz.scm (python-click): Update to 8.1.2.
[phases]{fix-paths}: Remove obsolete phase.
{check}: Invoke pytest directly and honor TESTS?.
(python2-click): Delete variable.
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* gnu/packages/fonts.scm (font-gfs-ambrosia): New variable.
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* gnu/packages/tex.scm (texlive-bidi): New variable.
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* gnu/packages/fonts.scm (font-sil-ezra): New variable.
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* gnu/packages/fonts.scm (font-amiri): New variable.
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* gnu/packages/fontutils.scm (python-sfdlib): New variable.
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* gnu/packages/fontutils.scm (python-ufo2ft): New variable.
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* gnu/packages/fontutils.scm (python-compreffor): New variable.
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* gnu/packages/fontutils.scm (python-ufolib2): New variable.
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* gnu/packages/fontutils.scm (python-skia-pathops): New variable.
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* gnu/packages/graphics.scm (skia): New variable.
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* gnu/packages/fontutils.scm (python-cffsubr): New variable.
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* gnu/packages/fontutils.scm (python-afdko): New variable.
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* gnu/packages/python-xyz.scm (python-fonttools-next): New variable.
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* gnu/packages/java.scm (java-antlr4-runtime-cpp): New variable.
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* gnu/packages/python-science.scm (python-scipy): Update to 1.8.0.
[modules]: New argument.
[phases]{disable-broken-tests}: Delete phase.
{configure-openblas}: Streamline configuration template.
{parallelize-build}: New phase.
{install-doc}: Move before 'check phase. Remove now extraneous
'add-installed-pythonpath' call. Remove the SPHINXBUILD and PYVER Make
variables, as well as conf.py patching. Provide SPHINXOPTS to build doc in
parallel. Simply recursively copy the 'html' output directory to install the
doc.
{check}: Remove extraneous INPUTS and OUTPUTS arguments. Start tests with the
'runtests.py' launcher, which accepts a '-j' argument to run the tests in
parallel.
[native-inputs]: Sort inputs. Add python-pytest-xdist and
python-threadpoolctl.
[home-page]: Update.
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* gnu/packages/python-science.scm (python-scipy): Move inputs fields below the
arguments field.
[phases]: Use gexp.
{configure-openblas}: Use this-package-input.
{check}: Remove extraneous 'add-installed-pythonpath' call.
{install-doc}: Adjust accordingly.
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* gnu/packages/jupyter.scm (python-jupyter-packaging): Update to 0.12.0.
[arguments]: New field.
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* gnu/packages/python-xyz.scm (python-scikit-build): New variable.
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This restores the package compatibility with python-pytest-xdist.
* gnu/packages/check.scm (python-pytest-cov): Update to 3.0.0.
(python2-pytest-cov): Delete package.
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* gnu/packages/python-check.scm (python-pytest-shutil)
[phases]{use-path-instead-of-path.py}: New phase.
[propagated-inputs]: Replace python-path.py with python-path.
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* gnu/packages/python-xyz.scm (python-pathpy): Mark as deprecated by
python-path.
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* gnu/packages/python-xyz.scm (python-setuptools): Update to 62.0.0.
[source]: Simplify snippet and strip trailing #t.
[arguments]: Re-indent.
[synopsis]: Likewise.
[description]: Use @itemize.
[license]: Strip leading spaces from in-line comments.
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* gnu/packages/python-xyz.scm (python-ubelt): New variable.
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* gnu/packages/python-xyz.scm (python-xdoctest): New variable.
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* gnu/packages/python-xyz.scm (python-ordered-set): New variable.
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