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2023-05-14gnu: codingquarry: Use G-expression....* gnu/packages/bioinformatics.scm (codingquarry)[arguments]: Use G-expression to simplify 'install phase. Install files to /share/codingquarry prefix. [native-search-paths]: Adjust prefix. [native-inputs]: Move python-2 from here... [inputs]: ...to here. Ricardo Wurmus
2023-05-14gnu: blast+: Update to 2.14.0....* gnu/packages/bioinformatics.scm (blast+): Update to 2.14.0. [arguments]: Remove trailing #T from build phases; let WHICH* return #FALSE on failure; use G-expression. [inputs]: Drop package labels. Ricardo Wurmus
2023-05-14gnu: cpp: Mention that autoload prevents module cycles....* gnu/packages/cpp.scm: Add a comment on the #:autoload to explain that serialization depends on cpp. Liliana Marie Prikler
2023-05-14gnu: Add lager....* gnu/packages/cpp.scm (lager): New variable. Liliana Marie Prikler
2023-05-14gnu: Add zug....* gnu/packages/cpp.scm (zug): New variable. Liliana Marie Prikler
2023-05-14gnu: Add immer....* gnu/packages/cpp.scm (immer): New variable. Liliana Marie Prikler
2023-05-14gnu: Add c-rrb....* gnu/packages/c.scm (c-rrb): New variable. Liliana Marie Prikler
2023-05-14gnu: nlohmann-json: Improve package style....* gnu/package/cpp.scm (nlohmann-json)[source]<snippet>: Fit to 80 chars width. Use G-Expressions. [arguments]: Use G-Expressions. Liliana Marie Prikler
2023-05-14gnu: nlohmann-json: Update to 3.11.2....* gnu/packages/cpp.scm (nlohmann-json): Update to 3.11.2. [source]<snippet>: Adjust accordingly. [native-inputs]<json_test_data>: Update to 3.1.0. Liliana Marie Prikler
2023-05-14gnu: Rename json-modern-cxx to nlohmann-json....* gnu/packages/cpp.scm (nlohmann-json): New variable. (json-modern-cxx): Mark as deprecated alias. (xtl, jsonnet)[inputs]: Use nlohmann-json. * gnu/packages/build-tools.scm (bear)[inputs]: Likewise. * gnu/packages/cybersecurity.scm (blacksmith)[inputs]: Likewise. * gnu/packages/databases.scm (sqlitebrowser)[inputs]: Adjust comment. * gnu/packages/games.scm (openrct2)[inputs]: Use nlohmann-json. * gnu/packages/graphics.scm (f3d)[native-inputs]: Likewise. * gnu/packages/hardware.scm (openrgb)[inputs]: Likewise. [arguments]: Adjust accordingly. * gnu/packages/image-processing.scm (paraview)[inputs]: Adjust comment. * gnu/packages/irods.scm (irods, irods-client-icommands)[inputs]: Use nlohmann-json. * gnu/packages/jupyter.scm (xeus)[inputs]: Likewise. * gnu/packages/messaging.scm (mtxclient, nheko)[inputs]: Likewise. * gnu/packages/text-editors.scm (jucipp)[inputs]: Likewise. * gnu/packages/video.scm (mktoolnix)[inputs]: Likewise. * gnu/packages/xdisorg.scm (nwg-launchers)[inputs]: Likewise. Liliana Marie Prikler
2023-05-14gnu: bitcoin-core: Update to 23.1....* gnu/packages/finance.scp (bitcoin-core): Update to 23.1. [inputs]: Add sqlite. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Michael Ford
2023-05-14gnu: mesa-opencl: Remove reference to patch....Fixes <https://bugs.gnu.org/63456>. * gnu/packages/patches/mesa-opencl-all-targets.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/gl.scm (mesa-opencl)[source]: Remove patch application. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Andy Tai
2023-05-14gnu: poke: Update to 3.2....* gnu/packages/engineering.scm (poke): Update to 3.2. Efraim Flashner
2023-05-14gnu: mousepad: Update to 0.6.1....* gnu/packages/xfce.scm (mousepad): Update to 0.6.1. 宋文武
2023-05-14gnu: ristretto: Update to 0.13.1....* gnu/packages/xfce.scm (ristretto): Update to 0.13.1. 宋文武
2023-05-14gnu: Add Iosevka comfy font....* gnu/packages/fonts.scm (font-iosevka-comfy): New variable. Signed-off-by: 宋文武 <iyzsong@member.fsf.org> Arnaud Lechevallier
2023-05-14gnu: Add bbcsdl....* gnu/packages/game-development.scm (bbcsdl): New variable. 宋文武
2023-05-14gnu: Add font-spleen....* gnu/packages/fonts.scm (font-spleen): New variable. Signed-off-by: 宋文武 <iyzsong@member.fsf.org> Ahmad Draidi
2023-05-14gnu: dwl: Update to 0.4....* gnu/packages/wm.scm (dwl): Update to 0.4. Signed-off-by: 宋文武 <iyzsong@member.fsf.org> Antero Mejr
2023-05-13gnu: Add xuidesigner....* gnu/packages/music.scm (xuidesigner): New variable. Ricardo Wurmus
2023-05-13gnu: shepherd: Fetch code from 'mirror://gnu'....* gnu/packages/admin.scm (shepherd-0.10): Fix URL. Ludovic Courtès
2023-05-13services: shepherd: Default to 0.10....* gnu/services/shepherd.scm (<shepherd-configuration>)[shepherd]: Default to SHEPHERD-0.10. * gnu/home/services/shepherd.scm (<home-shepherd-configuration>)[shepherd]: Likewise. Ludovic Courtès
2023-05-13gnu: shepherd: Add 0.10.0....* gnu/packages/admin.scm (shepherd-0.10): New variable. (guile2.2-shepherd): Inherit from SHEPHERD-0.10. Ludovic Courtès
2023-05-13gnu: python-sentry-sdk: Disable tests not working with pytest-7....* gnu/packages/python-xyz.scm (python-sentry-sdk)[arguments]: Update 'check' phase. Guillaume Le Vaillant
2023-05-13gnu: guile-opengl: Update to 0.2.0....* gnu/packages/gl.scm (guile-opengl): Update to 0.2.0. Remove obsolete build system hack. (guile3.0-opengl): Remove obsolete build system hack. David Thompson
2023-05-13gnu: diffoscope: Update to 242....* gnu/packages/diffoscope.scm (diffoscope): Update to 242. Signed-off-by: 宋文武 <iyzsong@member.fsf.org> Vagrant Cascadian
2023-05-13services: nar-herder: Support extra environment vars....* gnu/services/guix.scm (nar-herder-configuration-extra-environment-variables): New procedure. (nar-herder-shepherd-services): Pass the environment variables to the shepherd. * doc/guix.texi (Guix Services): Document it. Christopher Baines
2023-05-13gnu: ftxui: Build ftxui-benchmark....* gnu/packages/cpp.scm (ftxui)[native-inputs]: Add benchmark. [arguments]: Remove #:phases. Signed-off-by: 宋文武 <iyzsong@member.fsf.org> Artyom V. Poptsov
2023-05-13gnu: raylib: Fix audio and use system glfw....* gnu/packages/game-development.scm (raylib)[inputs]: Use glfw and pluseaudio. [arguments]: Set flags for glfw and pulseaudio. 宋文武
2023-05-13gnu: raylib: Update to 4.5.0....* gnu/packages/game-development.scm (raylib): Update to 4.5.0. 宋文武
2023-05-13gnu: python-rapidjson: Use pyproject-build-system....* gnu/packages/python-web.scm (python-rapidjson)[build-system]: Use pyproject-build-system. [arguments]: Do not use custom 'build and 'check phases. Ricardo Wurmus
2023-05-13gnu: python-markdown-it-py: Simplify by using pyproject-build-system....* gnu/packages/python-xyz.scm (python-markdown-it-py)[arguments]: Remove custom 'build and 'install phases. [build-system]: Use pyproject-build-system. Ricardo Wurmus
2023-05-13gnu: python-sphinx-panels: Use older docutils....* gnu/packages/sphinx.scm (python-sphinx-panels)[propagated-inputs]: Replace python-docutils with python-docutils-0.15. [build-system]: Use pyproject-build-system. [arguments]: Remove custom 'check phase. Ricardo Wurmus
2023-05-13gnu: ghc-tasty: Add missing dependency on i686-linux....Fixes <https://issues.guix.gnu.org/63421>. * gnu/packages/haskell-check.scm (ghc-tasty)[inputs]: Conditionally add ghc-unbounded-delays. Lars-Dominik Braun
2023-05-12gnu: python-orjson: Fix version string of Python module....* gnu/packages/python-xyz.scm (python-orjson)[arguments]: Remove invalid characters from version string. Ricardo Wurmus
2023-05-12gnu: python-orjson: Reuse phases from pyproject-build-system....* gnu/packages/python-xyz.scm (python-orjson)[arguments]: Include modules from pyproject-build-system; use their 'build and 'install phases instead of duplicating their contents. Ricardo Wurmus
2023-05-12gnu: python-canonicaljson: Use pyproject-build-system....* gnu/packages/python-xyz.scm (python-canonicaljson)[arguments]: Remove custom 'build, 'check, and 'install phases. [build-system]: Use pyproject-build-system. Ricardo Wurmus
2023-05-12gnu: python-pyproject-metadata: Simplify by using pyproject-build-system....* gnu/packages/python-xyz.scm (python-pyproject-metadata)[arguments]: Remove. [build-system]: Use pyproject-build-system. Ricardo Wurmus
2023-05-12gnu: python-seaborn: Simplify by using pyproject-build-system....* gnu/packages/python-xyz.scm (python-seaborn)[arguments]: Remove. [build-system]: Use pyproject-build-system. Ricardo Wurmus
2023-05-12gnu: shrinkwrap: Use pyproject-build-system....* gnu/packages/python-xyz.scm (shrinkwrap)[arguments]: Remove. [build-system]: Use pyproject-build-system. Ricardo Wurmus
2023-05-12gnu: jamm: Use G-expression....* gnu/packages/bioinformatics.scm (jamm)[arguments]: Use G-expression. Ricardo Wurmus
2023-05-12gnu: arriba: Use SEARCH-INPUT-FILE and -DIRECTORY....* gnu/packages/bioinformatics.scm (arriba)[arguments]: Use SEARCH-INPUT-DIRECTORY and SEARCH-INPUT-FILE; use G-expression; drop trailing #T from build phases. Ricardo Wurmus
2023-05-12gnu: multichoose: Clean up....* gnu/packages/bioinformatics.scm (multichoos): Fix indentation. [arguments]: Use G-expression. Ricardo Wurmus
2023-05-12gnu: samblaster: Update to 0.1.26....* gnu/packages/bioinformatics.scm (samblaster): Update to 0.1.26. Ricardo Wurmus
2023-05-12gnu: samblaster: Simplify....* gnu/packages/bioinformatics.scm (samblaster): Fix indentation. [arguments]: Use G-expression; drop trailing #T from 'install phase. [description]: Use double spacing between all sentences. Ricardo Wurmus
2023-05-12gnu: methyldackel: Update to 0.6.1....* gnu/packages/bioinformatics.scm (methyldackel): Update to 0.6.1. [arguments]: Set LIBBIGWIG variable instead of patching Makefile. [inputs]: Replace htslib-1.9 with htslib. Ricardo Wurmus
2023-05-12gnu: methyldackel: Simplify arguments....* gnu/packages/bioinformatics.scm (methyldackel)[arguments]: Use list, drop argument list. [native-inputs]: Drop package label. Ricardo Wurmus
2023-05-12gnu: phast: Simplify by using G-expression....* gnu/packages/bioinformatics.scm (phast)[arguments]: Use G-expression and drop trailing #T from build phases. Ricardo Wurmus
2023-05-12gnu: ribotaper: Simplify with G-expression....* gnu/packages/bioinformatics.scm (ribotaper)[arguments]: Use G-expression and drop trailing #T from build phase. Ricardo Wurmus
2023-05-12gnu: sra-tools: Do link with libxml2....* gnu/packages/bioinformatics.scm (sra-tools)[arguments]: Use G-expression for clarity; drop trailing #T from build phases; modify 'configure phase to dynamically link with libxml2. [inputs]: Drop package labels; add libxml2. Ricardo Wurmus
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