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2021-06-08gnu: Add rust-tectonic-geturl-0.2.Nicolas Goaziou
* gnu/packages/crates-io.scm (rust-tectonic-geturl-0.2): New variable.
2021-06-08gnu: rust-flate2-1: Update to 1.0.20.Nicolas Goaziou
* gnu/packages/crates-io.scm (rust-flate2-1): Update to 1.0.20.
2021-06-08gnu: Add rust-tectonic-status-base-0.1.Nicolas Goaziou
* gnu/packages/crates-io.scm (rust-tectonic-status-base-0.1): New variable.
2021-06-08gnu: Add rust-tectonic-errors-0.1.Nicolas Goaziou
* gnu/packages/crates-io.scm (rust-tectonic-errors-0.1): New variable.
2021-06-08gnu: Add rust-tectonic-errors-0.2.Nicolas Goaziou
* gnu/packages/crates-io.scm (rust-tectonic-errors-0.2): New variable.
2021-06-08gnu: watchexec: Update to 1.16.1.Nicolas Goaziou
* gnu/packages/rust-apps.scm (watchexec): Update to 1.16.1. [arguments]<#:phases>: Do not copy zsh completions. [description]: Shorten it.
2021-06-08gnu: Add rust-watchexec-1.Nicolas Goaziou
* gnu/packages/crates-io.scm (rust-watchexec-1): New variable.
2021-06-08gnu: rust-embed-resource-1: Update to 1.6.2.Nicolas Goaziou
* gnu/packages/crates-io.scm (rust-embed-resource-1): Update to 1.6.2.
2021-06-08gnu: rust-pest-2: Update to 2.1.3.Nicolas Goaziou
* gnu/packages/crates-io.scm (rust-pest-2): Update to 2.1.3.
2021-06-08gnu: Add rust-winreg-0.8.Nicolas Goaziou
* gnu/packages/crates-io.scm (rust-winreg-0.8): New variable. (rust-winreg-0.7): Inherit from above.
2021-06-08gnu: Add rust-insta-1.Nicolas Goaziou
* gnu/packages/crates-io.scm (rust-insta-1): New variable. (rust-insta-0.16): Inherit from above.
2021-06-08gnu: Add rust-ron-0.6.Nicolas Goaziou
* gnu/packages/crates-io.scm (rust-ron-0.6): New variable. (rust-ron-0.5): Inherit from above.
2021-06-08gnu: Add rust-similar-1.Nicolas Goaziou
* gnu/packages/crates-io.scm (rust-similar-1): New variable.
2021-06-08gnu: rust-zip-0.5: Update to 0.5.13.Nicolas Goaziou
* gnu/packages/crates-io.scm (rust-zip-0.5): Update to 0.5.13.
2021-06-08gnu: Add rust-clearscreen-1.Nicolas Goaziou
* gnu/packages/crates-io.scm (rust-clearscreen-1): New variable.
2021-06-08gnu: Add rust-terminfo-0.7.Nicolas Goaziou
* gnu/packages/crates-io.scm (rust-terminfo-0.7): New variable. (rust-terminfo-0.6): Inherit from above.
2021-06-08gnu: rust-thiserror-1: Update to 1.0.25.Nicolas Goaziou
* gnu/packages/crates-io.scm (rust-thiserror-1): Update to 1.0.25.
2021-06-08gnu: rust-thiserror-impl-1: Update to 1.0.25.Nicolas Goaziou
* gnu/packages/crates-io.scm (rust-thiserror-impl-1): Update to 1.0.25.
2021-06-08gnu: Add rust-derive-builder-0.10.Nicolas Goaziou
* gnu/packages/crates-io.scm (rust-derive-builder-0.10): New variable. (rust-derive-builder-0.9): Inherit from above.
2021-06-08gnu: Add rust-derive-builder-macro-0.10.Nicolas Goaziou
* gnu/packages/crates-io.scm (rust-derive-builder-macro-0.10): New variable.
2021-06-08gnu: Add rust-derive-builder-core-0.10.Nicolas Goaziou
* gnu/packages/crates-io.scm (rust-derive-builder-core-0.10): New variable. (rust-derive-builder-core-0.9): Inherit from above.
2021-06-08gnu: Add rust-darling-0.12.Nicolas Goaziou
* gnu/packages/crates-io.scm (rust-darling-0.12): New variable. (rust-darling-0.10): Inherit from above.
2021-06-08gnu: Add rust-darling-macro-0.12.Nicolas Goaziou
* gnu/packages/crates-io.scm (rust-darling-macro-0.12): New variable. (rust-darling-macro-0.10): Inherit from above.
2021-06-08gnu: Add rust-darling-core-0.12.Nicolas Goaziou
* gnu/packages/crates-io.scm (rust-darling-core-0.12): New variable. (rust-darling-core-0.10): Inherit from above.
2021-06-08gnu: rust-syn-1: Update to 1.0.72.Nicolas Goaziou
* gnu/packages/crates-io.scm (rust-syn-1): Update to 1.0.72.
2021-06-08gnu: rust-proc-macro2-1: Update to 1.0.27.Nicolas Goaziou
* gnu/packages/crates-io.scm (rust-proc-macro2-1): Update to 1.0.27.
2021-06-08gnu: rust-globset-0.4: Update to 0.4.6.Nicolas Goaziou
* gnu/packages/crates-io.scm (rust-globset-0.4): Update to 0.4.6.
2021-06-08gnu: rust-walkdir-2: Update to 2.3.2.Nicolas Goaziou
* gnu/packages/crates-io.scm (rust-walkdir-2): Update to 2.3.2. [arguments]<#:cargo-inputs> Reorder alphabetically.
2021-06-08gnu: bsnes: Don't build native binaries.nixo
* gnu/packages/emulators.scm (bsnes)[arguments]: Add configure-flag to not build native binaries. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-06-08gnu: Add u-boot-sifive-unmatched.Efraim Flashner
* gnu/packages/bootloaders.scm (u-boot-sifive-unmatched): New variable.
2021-06-08gnu: u-boot-2021.07: Update to 2021.07-rc4.Efraim Flashner
* gnu/packages/bootloaders.scm (u-boot-2021.07): Update to 2021.07-rc4.
2021-06-08grafts: Cache the derivation/graft mapping for the whole session.Ludovic Courtès
Partly fixes <https://bugs.gnu.org/41702>. Reported by Lars-Dominik Braun <ldb@leibniz-psychology.org>. Previously, 'graft-derivation' would start anew at every call. When creating a profile with lots of packages, it would potentially do the same work multiple times. The per-session cache addresses this. It increases the derivation-graft-cache hit rate from 77.9% to 80.1% on: GUIX_PROFILING="derivation-graft-cache" ./pre-inst-env \ guix environment --ad-hoc libreoffice inkscape krita darktable -n The effect is more visible on the pathological case below, where cache hit rate goes from 75% to 87% and wall-clock time from 5.0s to 3.5s: GUIX_PROFILING="derivation-graft-cache" ./pre-inst-env \ guix environment --ad-hoc r-learnr --search-paths * guix/grafts.scm (%graft-cache): New variable. (graft-derivation): Add calls to 'store-connection-cache' and 'set-store-connection-cache!'.
2021-06-08store: 'references/cached' now uses a per-session cache.Ludovic Courtès
* guix/store.scm (%reference-cache): Remove. (%reference-cache-id): New variable. (references/cached): Rewrite in terms of it.
2021-06-08store: Remove 'references/substitutes'.Ludovic Courtès
This procedure lost its only user in commit 710854304b1ab29332edcb76f3de532e0724c197. * guix/store.scm (references/substitutes): Remove. * tests/store.scm ("references/substitutes missing reference info") ("references/substitutes with substitute info"): Remove.
2021-06-08grafts: Use SRFI-71 instead of SRFI-11.Ludovic Courtès
* guix/grafts.scm (reference-origins): Use SRFI-71 'let*'.
2021-06-08grafts: Record cache lookups for profiling.Ludovic Courtès
* guix/grafts.scm (record-cache-lookup!): New procedure. (with-cache): Use it.
2021-06-08store: Generalize cache lookup recording.Ludovic Courtès
* guix/store.scm (cache-lookup-recorder): New procedure. (record-cache-lookup!): Define in terms of it.
2021-06-08store: Support dynamic allocation of per-connection caches.Ludovic Courtès
* guix/store.scm (<store-connection>)[object-cache]: Remove. [caches]: New field. (open-connection, port->connection): Adjust '%make-store-connection' calls accordingly. (%store-connection-caches, %object-cache-id): New variables. (allocate-store-connection-cache, vector-set) (store-connection-cache, set-store-connection-cache) (set-store-connection-caches!, set-store-connection-cache!): New procedures. (cache-object-mapping): Add #:cache parameter. (set-store-connection-object-cache!): Remove. (lookup-cached-object): Use 'store-connection-cache'. (run-with-store): Use 'store-connection-caches' and 'set-store-connection-caches!'.
2021-06-08gnu: pantheon: Use modern 'define-module' syntax.Ludovic Courtès
The :prefix bit introduced in 9f59a9b4bc93b3ef6cd3bd1c9eed04c30ba2d2d4 led to a test failure in 'tests/graph.scm'. * gnu/packages/pantheon.scm: Write #:prefix, not :prefix.
2021-06-08doc: Update minimum Guile-Git version.Ludovic Courtès
* doc/guix.texi (Requirements): Update Guile-Git version.
2021-06-08news: Fix typo.Ludovic Courtès
* etc/news.scm: Remove 'x' introduced by mistake in dfdcd9d812d20a86babc4da8a01bc17e44900c3c.
2021-06-08gnu: python-mappy: Move to (gnu packages bioinformatics).Efraim Flashner
* gnu/packages/python-xyz.scm (python-mappy): Move to ... * gnu/packages/bioinformatics.scm: ... here.
2021-06-08gnu: jami: Update to 20210606.1.e2f9490.Maxim Cournoyer
* gnu/packages/jami.scm (jami): Update to 20210606.1.e2f9490. (pjproject-jami)[0019-ignore-down-interfaces]: Apply new custom patch. (jami-qt)[source]: Use %jami-sources, which now includes the Qt client. [phases]{change-directory}: New phase.
2021-06-08gnu: jami: Always include the custom Jami patches with the sources.Maxim Cournoyer
Before this change, there was a Jami origin containing the sources with the patches, and another one containing the sources but with the patches removed. Unify the source to always contain the patches, which adds just 1 MiB to the corresponding tarball and simplifies things. * gnu/packages/jami.scm (%jami-sources): Make it a simple variable. Move the docstring to a comment. Only remove the tarballs, always keeping the patches with the sources. Adjust the comments. (%sfl-patches): Remove variable. (jami-apply-dependency-patches): Rename to... (jami-apply-custom-patches): ... this. Adjust the input label used to 'jami-sources'. (pjproject-jami): Replace %sfl-patches by %jami-sources. Adjust following the renaming of the jami-apply-custom-patches procedure. (ffmpeg-jami): Likewise. Do not make a temporary binding, simply call the unquoted jami-apply-custom-patches procedure.
2021-06-08gnu: opendht: Update to 2.2.0rc7-1.c8a0b44.Maxim Cournoyer
* gnu/packages/networking.scm (opendht): Update to 2.2.0rc7-1.c8a0b44.
2021-06-07gnu: Add l3afpad.Leo Famulari
* gnu/packages/text-editors.scm (l3afpad): New variable.
2021-06-08gnu: pigx-rnaseq: Update to 0.0.17.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.17. [arguments]: Remove "use-latest-salmon" phase; add "set-timezone" phase. [inputs]: Replace r-gprofiler with r-gprofiler2; add r-ggpubr and python-deeptools. [native-inputs]: Add tzdata.
2021-06-07gnu: ghostwriter: Update to 2.0.1.Leo Famulari
* gnu/packages/text-editors.scm (ghostwriter): Update to 2.0.1.
2021-06-07gnu: python-pikepdf: Update to 2.12.2.Nicolas Goaziou
* gnu/packages/python-xyz.scm (python-pikepdf): Update to 2.12.2.
2021-06-07gnu: dino: Update to 0.2.1 [fixes CVE-2021-33896].Jack Hill
* gnu/packages/messaging.scm (dino): Update to 0.2.1. Signed-off-by: Leo Famulari <leo@famulari.name>
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