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2017-09-01build: emacs-build-system: Make the install phase more helpful.•••Modify the install phase to detect when nothing has been installed, and error if this happens. This is preferable to continuing, and allowing the next phase to fail. Also, when nothing can be found to be installed, print out each file that was considered, along with the regular expressions that were used to include and exclude it. * gnu/build/emacs-build-system.scm (install-file?): Add additional error checking and logging. Christopher Baines
2017-09-01gnu: r-minimal: Update to 3.4.1.•••* gnu/packages/statistics.scm (r-minimal): Update to 3.4.1. Ricardo Wurmus
2017-09-01gnu: vdirsyncer: Update to 0.16.2.•••* gnu/packages/dav.scm (vdirsyncer): Update to 0.16.2. Leo Famulari
2017-09-01gnu: python-click-log: Update to 0.2.0.•••* gnu/packages/python.scm (python-click-log): Update to 0.2.0. Leo Famulari
2017-09-01gnu: python-click-threading: Update to 0.4.3.•••* gnu/packages/python.scm (python-click-threading): Update to 0.4.3. [source]: Use pypi-uri. Leo Famulari
2017-09-01gnu: python-icalendar: Update to 3.11.7.•••* gnu/packages/python.scm (python-icalendar): Update to 3.11.7. Leo Famulari
2017-09-01gnu: r-genomicalignments: Update to 1.12.2.•••* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.12.2. Ricardo Wurmus
2017-09-01gnu: r-tidyr: Update to 0.7.0.•••* gnu/packages/statistics.scm (r-tidyr): Update to 0.7.0. [propagated-inputs]: Remove r-lazyeval; add r-glue, r-purrr, r-rlang, and r-tidyselect. Ricardo Wurmus
2017-09-01gnu: Add r-tidyselect.•••* gnu/packages/statistics.scm (r-tidyselect): New variable. Ricardo Wurmus
2017-09-01gnu: r-vegan: Update to 2.4-4.•••* gnu/packages/bioinformatics.scm (r-vegan): Update to 2.4-4. [native-inputs]: Remove r-knitr. Ricardo Wurmus
2017-09-01gnu: r-maldiquant: Update to 1.16.4.•••* gnu/packages/bioinformatics.scm (r-maldiquant): Update to 1.16.4. Ricardo Wurmus
2017-09-01gnu: r-bookdown: Update to 0.5.•••* gnu/packages/bioinformatics.scm (r-bookdown): Update to 0.5. Ricardo Wurmus
2017-09-01gnu: r-ksamples: Update to 1.2-7.•••* gnu/packages/cran.scm (r-ksamples): Update to 1.2-7. Ricardo Wurmus
2017-09-01gnu: r-distillery: Update to 1.0-4.•••* gnu/packages/cran.scm (r-distillery): Update to 1.0-4. Ricardo Wurmus
2017-09-01gnu: r-sp: Update to 1.2-5.•••* gnu/packages/cran.scm (r-sp): Update to 1.2-5. Ricardo Wurmus
2017-09-01gnu: r-ggally: Update to 1.3.2.•••* gnu/packages/cran.scm (r-ggally): Update to 1.3.2. Ricardo Wurmus
2017-09-01gnu: r-reshape: Update to 0.8.7.•••* gnu/packages/cran.scm (r-reshape): Update to 0.8.7. Ricardo Wurmus
2017-09-01gnu: r-powerlaw: Update to 0.70.1.•••* gnu/packages/cran.scm (r-powerlaw): Update to 0.70.1. Ricardo Wurmus
2017-09-01gnu: r-circlize: Update to 0.4.1.•••* gnu/packages/cran.scm (r-circlize): Update to 0.4.1. Ricardo Wurmus
2017-09-01gnu: r-shape: Update to 1.4.3.•••* gnu/packages/cran.scm (r-shape): Update to 1.4.3. Ricardo Wurmus
2017-09-01gnu: r-tclust: Update to 1.3-1.•••* gnu/packages/statistics.scm (r-tclust): Update to 1.3-1. Ricardo Wurmus
2017-09-01gnu: r-fastcluster: Update to 1.1.24.•••* gnu/packages/statistics.scm (r-fastcluster): Update to 1.1.24. Ricardo Wurmus
2017-09-01gnu: r-rcpparmadillo: Update to 0.7.960.1.2.•••* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.960.1.2. Ricardo Wurmus
2017-09-01gnu: r-plotrix: Update to 3.6-6.•••* gnu/packages/statistics.scm (r-plotrix): Update to 3.6-6. Ricardo Wurmus
2017-09-01gnu: r-httr: Update to 1.3.1.•••* gnu/packages/statistics.scm (r-httr): Update to 1.3.1. [propagated-inputs]: Remove r-digest and r-stringr. Ricardo Wurmus
2017-09-01gnu: r-commonmark: Update to 1.4.•••* gnu/packages/statistics.scm (r-commonmark): Update to 1.4. Ricardo Wurmus
2017-09-01gnu: r-ade4: Update to 1.7-8.•••* gnu/packages/statistics.scm (r-ade4): Update to 1.7-8. Ricardo Wurmus
2017-09-01gnu: r-tibble: Update to 1.3.4.•••* gnu/packages/statistics.scm (r-tibble): Update to 1.3.4. Ricardo Wurmus
2017-09-01gnu: r-rlang: Update to 0.1.2.•••* gnu/packages/statistics.scm (r-rlang): Update to 0.1.2. Ricardo Wurmus
2017-09-01gnu: r-knitr: Update to 1.17.•••* gnu/packages/statistics.scm (r-knitr): Update to 1.17. Ricardo Wurmus
2017-09-01gnu: r-bh: Update to 1.65.0-1.•••* gnu/packages/statistics.scm (r-bh): Update to 1.65.0-1. Ricardo Wurmus
2017-09-01gnu: r-scales: Update to 0.5.0.•••* gnu/packages/statistics.scm (r-scales): Update to 0.5.0. [propagated-inputs]: Add r-r6 and r-viridislite. Ricardo Wurmus
2017-09-01gnu: r-mgcv: Update to 1.8-19.•••* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-19. Ricardo Wurmus
2017-09-01gnu: r-matrix: Update to 1.2-11.•••* gnu/packages/statistics.scm (r-matrix): Update to 1.2-11. Ricardo Wurmus
2017-09-01gnu: r-servr: Update to 0.7.•••* gnu/packages/web.scm (r-servr): Update to 0.7. Ricardo Wurmus
2017-09-01gnu: php: Update to 7.1.9.•••* gnu/packages/php.scm (php): Update to 7.1.9. Julien Lepiller
2017-09-01gnu: java-slf4j-api: Fix tests.•••* gnu/packages/java.scm (java-slf4j-api)[arguments]: Enable tests Adjust the jar content to prevent a test failure. Julien Lepiller
2017-09-01gnu: djvulibre: Remove timestamps from .svgz files.•••* gnu/packages/djvu.scm (djvulibre)[arguments]: New field. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Z. Ren
2017-09-01gnu: Add emacs-tuareg.•••* gnu/packages/ocaml.scm (emacs-tuareg): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Oleg Pykhalov
2017-09-01gnu: emacs-ebuild-mode: Update to 1.37.•••* gnu/packages/emacs.scm (emacs-ebuild-mode): Update to 1.37. Signed-off-by: Ludovic Courtès <ludo@gnu.org> ng0
2017-09-01gnu: Add emacs-2048-game.•••* gnu/packages/emacs.scm (emacs-2048-game): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> ng0
2017-09-01packages: 'fold-packages' takes an optional 'modules' parameter.•••Suggested by Christopher Baines <mail@cbaines.net>. * gnu/packages.scm (fold-packages): Add optional 'modules' parameter and honor it. Ludovic Courtès
2017-09-01scripts: Remove 'max-silent-time' from the default options.•••Fixes <http://bugs.gnu.org/27157>. Having a finite default `max-silent-time' value for scripts such as 'guix environment' could lead to timeouts when building subtitutes; this was undesirable. This change also fixes client behavior to match the documentation, which is that by default the daemon's settings are honored. * guix/scripts/archive.scm (%default-options): Remove max-silent-time entry. * guix/scripts/copy.scm (%default-options): Likewise. * guix/scripts/environment.scm (%default-options): Likewise. * guix/scripts/pack.scm (%default-options): Likewise. * guix/scripts/package.scm (%default-options): Likewise. * guix/scripts/pull.scm (%default-options): Likewise. * guix/scripts/system.scm (%default-options): Likewise. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Maxim Cournoyer
2017-09-01gnu: r-rcas: Correct license.•••* gnu/packages/bioinformatics.scm (r-rcas)[license]: Use correct license. Ricardo Wurmus
2017-09-01gnu: r-rcas: Update to 1.3.3.•••* gnu/packages/bioinformatics.scm (r-rcas): Update to 1.3.3. Ricardo Wurmus
2017-09-01gnu: mysql: Enable tests on aarch64.•••* gnu/packages/databases.scm (mysql)[arguments]: Remove logic disabling the tests on aarch64-linux. Efraim Flashner
2017-09-01gnu: vsearch: Update to 2.4.4.•••* gnu/packages/bioinformatics.scm (vsearch): Update to 2.4.4. Ben Woodcroft
2017-09-01gnu: metabat: Update to 2.12.1.•••* gnu/packages/patches/metabat-remove-compilation-date.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/bioinformatics.scm (metabat): Update to 2.12.1. [source]: Remove it. Use url-fetch. Ben Woodcroft
2017-09-01gnu: netcdf: Fix reproducibility issue; remove unneeded references.•••* gnu/packages/maths.scm (netcdf) [arguments]: Add phase to fix the embedded 'Configured On' date; truncate reference to compiler store item. Thomas Danckaert
2017-09-01gnu: hdf4: Avoid unneeded store references to compilers.•••* gnu/packages/maths.scm (hdf4) [arguments]: Add phase 'patch-settings to truncate hashes of compiler store items. Thomas Danckaert
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