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2019-05-31gnu: gnucash-docs: Update to 3.5.Vasile Dumitrascu
* gnu/packages/gnucash.scm (gnucash-docs): Update to 3.5. Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
2019-05-31gnu: gnucash: Update to 3.5.Vasile Dumitrascu
* gnu/packages/gnucash.scm (gnucash): Update to 3.5. [source]: Remove unneeded patch. * gnu/packages/patches/gnucash-fix-test-transaction-failure.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove patch. Signed-off-by: Kei Kebreau <kkebreau@posteo.net>
2019-05-31gnu: dealii-openmpi: Add hdf5-parallel-openmpi input.Eric Bavier
* gnu/packages/maths.scm (dealii-openmpi)[inputs]: Add hdf5-parallel-openmpi.
2019-05-31gnu: slepc: Update to 3.11.1.Eric Bavier
* gnu/packages/maths.scm (slepc): Update to 3.11.1. [native-inputs]: Add petsc:examples. [arguments]: Add PETSCCONFIGDIR to #:make-flags.
2019-05-31gnu: petsc: Update to 3.11.2.Eric Bavier
* gnu/packages/maths.scm (petsc): Update to 3.11.2.
2019-05-31gnu: petsc-complex-mpi: Setup MPI for tests.Eric Bavier
* gnu/packages/maths.scm (petsc-complex-mpi)[arguments]: Add 'mpi-setup phase.
2019-05-31gnu: Add mousepad.Kei Kebreau
* gnu/packages/xfce.scm (mousepad): New variable.
2019-05-31gnu: Add zbar.Guillaume LE VAILLANT
* gnu/packages/aidc.scm (zbar): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-05-31services: Add patchwork.Christopher Baines
* gnu/service/web.scm (<patchwork-database-configuration> <patchwork-settings-module>, <patchwork-configuration>): New record types. (patchwork-virtualhost): New procedure. (patchwork-service-type): New variable. * gnu/tests/web.scm (%test-patchwork): New variable. * doc/guix.text (Web Services): Document it.
2019-05-31gnu: Add patchwork.Christopher Baines
* gnu/packages/patchutils.scm (patchwork): New variable.
2019-05-31services: Add getmail.Christopher Baines
Getmail is a mail retriever written in Python, this commit adds a service-type to run getmail. I'm looking at this, as it's a convinient way of getting mailing list messages in to Patchwork. I initially tried putting this in the (gnu services mail) module, but due to also trying to use the define-configuration pattern, it conflicted with the dovecot service. * gnu/services/getmail.scm: New file. * gnu/local.mk: Add it. * gnu/tests/mail.scm (%getmail-os, %test-getmail): New variables. (run-getmail-test): New procedure.
2019-05-31gnu: Go 1.4: Fix typo.Leo Famulari
* gnu/packages/golang.scm (go-1.4): Fix typo in comment.
2019-05-31gnu: gtksourceview-2: Fix finding default data.Julien Lepiller
* gnu/packages/patches/gtksourceview-2-add-default-directory.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/gtk.scm (gtksourceview-2)[source]: Use it.
2019-05-31gnu: php: Update to 7.3.6.Julien Lepiller
* gnu/packages/php.scm (php): Update to 7.3.6.
2019-05-31gnu: Add r-birta.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-birta): New variable.
2019-05-31gnu: Add r-birewire.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-birewire): New variable.
2019-05-31gnu: r-seriation: Update to 1.2-5.Ricardo Wurmus
* gnu/packages/cran.scm (r-seriation): Update to 1.2-5.
2019-05-31gnu: emacs-diff-hl: Update to 1.8.6.Brian Leung
* gnu/packages/emacs-xyz.scm (emacs-diff-hl): Update to 1.8.6. [source]: Fetch from git. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-05-31gnu: emacs-helm: Update to 3.2.Brian Leung
* gnu/packages/emacs-xyz.scm (emacs-helm): Update to 3.2. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-05-31gnu: emacs-counsel-tramp: Update to 0.6.3.Brian Leung
* gnu/packages/emacs-xyz.scm (emacs-counsel-tramp): Update to 0.6.3. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-05-31gnu: emacs-editorconfig: Update to 0.8.0.Brian Leung
* gnu/packages/emacs-xyz.scm (emacs-editorconfig): Update to 0.8.0. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-05-31gnu: emacs-exec-path-from-shell: Update to 1.12.Brian Leung
* gnu/packages/emacs-xyz.scm (emacs-exec-path-from-shell): Update to 1.12. [source]: Use git-fetch. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-05-31gnu: Add emacs-reformatter.LaFreniere, Joseph
* gnu/packages/emacs-xyz.scm (emacs-reformatter): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-05-31gnu: Add emacs-ivy-pass.Joseph LaFreniere
* gnu/packages/emacs-xyz.scm (emacs-ivy-pass): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-05-31gnu: kitty: Update to 0.14.1.Rutger Helling
* gnu/packages/terminals.scm (kitty): Update to 0.14.1.
2019-05-30gnu: diffoscope: Update to version 115-1.7f3416f.Vagrant Cascadian
* gnu/packages/package-management (diffoscope): [package] Update to version 115-1.7f3416f. [source] Switch to using git-fetch. [inputs] Move python-pytest and python-chardet ... [native-inputs] ... to here. [arguments] Move comment to fit line length.
2019-05-30gnu: r-biocviews: Update to 1.52.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.52.1.
2019-05-30gnu: r-tibble: Update to 2.1.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-tibble): Update to 2.1.2.
2019-05-30gnu: r-dose: Update to 3.10.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-dose): Update to 3.10.1.
2019-05-30gnu: Add gthumb.Andy Tai
* gnu/packages/gnome.scm (gthumb): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2019-05-29gnu: sddm: Add QtQuick-related dependencies to sddm.Reza Alizadeh Majd
* gnu/packages/display-managers.scm (sddm): add QtQuick related dependencies to sddm package in order to `sddm-greeter` application to load user defined themes which are based on QtQuick. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-05-29publish: Factorize 'compress-nar'.Ludovic Courtès
* guix/scripts/publish.scm (compress-nar): New procedure. (bake-narinfo+nar): Use it.
2019-05-29publish: Remove outdated comment.Ludovic Courtès
* guix/scripts/publish.scm (make-request-handler): Remove outdated TODO.
2019-05-29gnu: r-statmod: Update to 1.4.32.Ricardo Wurmus
* gnu/packages/statistics.scm (r-statmod): Update to 1.4.32.
2019-05-29gnu: r-fields: Update to 9.8-3.Ricardo Wurmus
* gnu/packages/cran.scm (r-fields): Update to 9.8-3.
2019-05-29gnu: r-bayestestr: Update to 0.2.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-bayestestr): Update to 0.2.0.
2019-05-29gnu: Use make-linux-libre-headers.Carl Dong
* gnu/packages/linux.scm (make-linux-libre-headers): New variable. (linux-libre): Rename to... (linux-libre-5.1): ...this. (linux-libre-headers): Rename to... (linux-libre-headers-4.14.67): ...this. (linux-libre-5.1, linux-libre-headers-4.14.67): Use make-linux-libre-headers. (linux-libre-5.1, linux-libre-headers-5.1, linux-libre-headers-4.19, %linux-libre-4.15-version, %linux-libre-4.15-hash, linux-libre-4.15, linux-libre-headers-4.15, linux-libre-headers-4.14): New variables. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-29gnu: cross-base: Allow non-default linux-headers.Carl Dong
* gnu/packages/cross-base.scm (cross-kernel-headers): Add LINUX-HEADERS optional argument. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-29gnu: Add basic support for riscv64-linux-gnu targets.Carl Dong
* gnu/packages/bootstrap.scm (glibc-dynamic-linker): Add "riscv64-linux". * gnu/packages/linux.scm (system->linux-architecture): Add "riscv" prefix. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-29gnu: Add childsplay.Nicolas Goaziou
* gnu/packages/education.scm (childsplay): New variable.
2019-05-29installer: Fix wifi menu crash with hidden SSIDs.Mathieu Othacehe
This fixes https://issues.guix.gnu.org/issue/35622. * gnu/installer/connman.scm (<service>): Mention that name may be false. * gnu/installer/newt/wifi.scm (wifi-services): Filter out wifi services without name. Co-authored by: Pierre Neidhardt <mail@ambrevar.xyz>
2019-05-29gnu: awscli: Add missing input.Ricardo Wurmus
Fixes <https://bugs.gnu.org/35980>. * gnu/packages/python-web.scm (awscli)[arguments]: Add build phase "fix-reference-to-groff". [inputs]: Add groff.
2019-05-29gnu: r-scran: Update to 1.12.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-scran): Update to 1.12.1.
2019-05-29gnu: r-scater: Update to 1.12.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-scater): Update to 1.12.2.
2019-05-29gnu: r-sva: Update to 3.32.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-sva): Update to 3.32.1.
2019-05-29gnu: r-genomicfeatures: Update to 1.36.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.36.1.
2019-05-29gnu: r-edger: Update to 3.26.4.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.26.4.
2019-05-29gnu: r-variantannotation: Update to 1.30.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.30.1.
2019-05-28import: cran: Ignore invalid packages from the system requirements.Ricardo Wurmus
* guix/import/cran.scm (description->package): Filter invalid packages from the list of system requirements.
2019-05-28gnu: r-atacseqqc: Update to 1.8.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.8.1.
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