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2019-04-03gnu: Add r-wrench.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-wrench): New variable.
2019-04-03gnu: gnu-mate-icon-theme-faenza: Update to 1.20.0.guy fleury iteriteka
* gnu/packages/mate.scm (gnu-mate-icon-theme-faenza): Update to 1.20.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-04-03gnu: mate-polkit: Update to 1.22.0.guy fleury iteriteka
* gnu/packages/mate.scm (mate-polkit): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-04-03gnu: mate-system-monitor: Update to 1.22.0.guy fleury iteriteka
* gnu/packages/mate.scm (mate-system-monitor): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-04-03gnu: pluma: Update to 1.22.0.guy fleury iteriteka
* gnu/packages/mate.scm (pluma): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-04-03gnu: engrampa: Update to 1.22.0.guy fleury iteriteka
* gnu/packages/mate.scm (engrampa): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-04-03gnu: eom: Update to 1.22.0.guy fleury iteriteka
* gnu/packages/mate.scm (eom): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-04-03gnu: mate-utils: Update to 1.22.0.Guy fleury
* gnu/packages/mate.scm (mate-utils): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-04-03gnu: mate-screensaver: Update to 1.22.0.guy fleury iteriteka
* gnu/packages/mate.scm (mate-screensaver): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-04-03gnu: mate-netbook: Update to 1.22.0.guy fleury iteriteka
* gnu/packages/mate.scm (mate-netbook): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-04-03gnu: backgrounds: Update to 1.22.0.guy fleury iteriteka
* gnu/packages/mate.scm (backgrounds): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-04-03gnu: mate-calc: Update to 1.22.0.guy fleury iteriteka
* gnu/packages/mate.scm (mate-calc): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-04-03gnu: mate-user-guide: Update to 1.22.0.guy fleury iteriteka
* gnu/packages/mate.scm (mate-user-guide): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-04-03gnu: mate-control-center: Update to 1.22.0.guy fleury iteriteka
* gnu/packages/mate.scm (mate-control-center): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-04-03gnu: caja-extensions: Update to 1.22.0.guy fleury iteriteka
* gnu/packages/mate.scm (caja-extensions): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-04-03gnu: atril: Update to 1.22.0.guy fleury iteriteka
* gnu/packages/mate.scm (atril): Update to 1.22.0. [arguments]<#:configure-flags>: Remove pre-GTK3 option. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-04-03gnu: marco: Update to 1.22.0.guy fleury iteriteka
* gnu/packages/mate.scm (marco): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-04-03gnu: caja: Update to 1.22.0.guy fleury iteriteka
* gnu/packages/mate.scm (caja): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-04-03gnu: mate-media: Update to 1.22.0.guy fleury iteriteka
* gnu/packages/mate.scm (mate-media): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-04-03gnu: mate-applets: Update to 1.22.0.guy fleury iteriteka
* gnu/packages/mate.scm (mate-applets): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-04-03gnu: mate-panel: Update to 1.22.0.guy fleury iteriteka
* gnu/packages/mate.scm (mate-panel): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-04-03gnu: mate-menus: Update to 1.22.0.guy fleury iteriteka
* gnu/packages/mate.scm (mate-menus): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-04-03gnu: libmatekbd: Update to 1.22.0.guy fleury iteriteka
* gnu/packages/mate.scm (libmatekbd): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-04-03gnu: libmatemixer: Update to 1.22.0.guy fleury iteriteka
* gnu/packages/mate.scm (libmatemixer): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-04-03gnu: mate-settings-daemon: Update to 1.22.0.guy fleury iteriteka
* gnu/packages/mate.scm (mate-settings-daemon): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-04-03gnu: mate-session-manager: Update to 1.22.0.guy fleury iteriteka
* gnu/packages/mate.scm (mate-session-manager): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-04-03gnu: mate-terminal: Update to 1.22.0guy fleury iteriteka
* gnu/packages/mate.scm (mate-terminal): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-04-03gnu: libmatewether: Update to 1.22.0.guy fleury iteriteka
* gnu/packages/mate.scm (libmatewether): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-04-03gnu: mate-desktop: Update to 1.22.2.guy fleury iteriteka
* gnu/packages/mate.scm (mate-desktop): Update to 1.22.0. [inputs]: Add iso-codes. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-04-03gnu: mate-themes: Update to 3.22.19.guy fleury iteriteka
* gnu/packages/mate.scm (mate-themes): Update to 3.22.19. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-04-03gnu: mate-icon-theme: Update to 1.22.0.guy fleury iteriteka
* gnu/packages/mate.scm (mate-icon-theme): Update to 1.20.3. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-04-03gnu: mate-common: Update to 1.22.0.guy fleury iteriteka
* gnu/packages/mate.scm (mate-common): Update to 1.22.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-04-02gnu: Add brlaser.Ricardo Wurmus
* gnu/packages/printers.scm (brlaser): New variable.
2019-04-02gnu: wxmaxima: Update to 19.03.1.Kei Kebreau
* gnu/packages/maths.scm (wxmaxima): Update to 19.03.1.
2019-04-02gnu: livemedia-utils: Update to 2019.03.06.Leo Famulari
* gnu/packages/video.scm (livemedia-utils): Update to 2019-03-06. [source]: Remove snippet.
2019-04-02gnu: Syncthing: Update to 1.1.1.Leo Famulari
* gnu/packages/syncthing.scm (syncthing): Update to 1.1.1.
2019-04-02gnu: Go standard crypto library: Update to 0.0.0-3.b7391e9 [security fixes].Leo Famulari
Fixes a vulnerability in 'golang.org/x/crypto/salsa20' where, if more than 256 GiB of keystream is generated, or if the counter otherwise grows greater than 32 bits, the amd64 implementation will first generate incorrect output, and then cycle back to previously generated keystream. https://go.googlesource.com/crypto/+/b7391e95e576cacdcdd422573063bc057239113d * gnu/packages/golang.scm (go-golang-org-x-crypto-bcrypt, go-golang-org-x-crypto-blowfish, go-golang-org-x-crypto-pbkdf2, go-golang-org-x-crypto-tea, go-golang-org-x-crypto-salsa20, go-golang-org-x-crypto-cast5, go-golang-org-x-crypto-twofish, go-golang-org-x-crypto-xtea, go-golang-org-x-crypto-ed25519, go-golang-org-x-crypto-ripemd160, go-golang-org-x-crypto-blake2s, go-golang-org-x-crypto-sha3, go-golang-org-x-crypto-ssh-terminal): Update to 0.0.0-3.b7391e9. (go-golang-org-x-crypto-blake2s)[propagated-inputs]: Add go-golang-org-x-sys-cpu. (go-golang-org-x-crypto-blowfish, go-golang-org-x-crypto-pbkdf2, go-golang-org-x-crypto-tea, go-golang-org-x-crypto-salsa20, go-golang-org-x-crypto-cast5, go-golang-org-x-crypto-twofish, go-golang-org-x-crypto-xtea, go-golang-org-x-crypto-ssh-terminal): Inherit from go-golang-org-x-crypto-bcrypt.
2019-04-02gnu: Add go-golang-org-x-sys-cpu.Leo Famulari
* gnu/packages/golang.scm (go-golang-org-x-sys-cpu): New variable.
2019-04-02environment: '-C' creates namespaces where the user is not root.Ludovic Courtès
* guix/scripts/environment.scm (launch-environment/container): Add UID and GID. Use them in PASSWD and GROUPS. Pass them as #:guest-uid and #:guest-gid to 'call-with-container'. * tests/guix-environment-container.sh: Test the inner UID. In '--user' test, replace hard-coded 0 with 1000. * doc/guix.texi (Invoking guix environment): Adjust accordingly.
2019-04-02linux-container: Make the guest UID and GID a parameter.Ludovic Courtès
* gnu/build/linux-container.scm (initialize-user-namespace): Add #:guest-uid and #:guest-gid parameters and honor them. (run-container): Likewise. (call-with-container): Likewise. * tests/containers.scm ("call-with-container, user namespace, guest UID/GID"): New test.
2019-04-02nls: Update 'de' translation of the manual.Ludovic Courtès
2019-04-02gnu: pigx-scrnaseq: Use older loompy.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[inputs]: Replace python-loompy with python-loompy-for-pigx-scrnaseq.
2019-04-02gnu: Add python-loompy-for-pigx-scrnaseq.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-loompy-for-pigx-scrnaseq): New variable.
2019-04-02gnu: pigx-chipseq: Update to 0.0.40.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.0.40.
2019-04-02gnu: python-scanpy: Add python-louvain to inputs.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-scanpy)[propagated-inputs]: Sort inputs and add python-louvain. [arguments]: Do not delete test that depends on louvain.
2019-04-02gnu: Add python-louvain.Ricardo Wurmus
* gnu/packages/graph.scm (python-louvain): New variable.
2019-04-02gnu: faudio: Update to 19.04.Rutger Helling
* gnu/packages/audio.scm (faudio): Update to 19.04.
2019-04-02gnu: Add emacs-evil-numbers.Clément Lassieur
* gnu/packages/emacs-xyz.scm (emacs-evil-numbers): New variable.
2019-04-01gnu: gnome-shell: Add dependency on libgnomekbd.Ludovic Courtès
This fixes the "Show keyboard layout" button in the keyboard layout switcher. * gnu/packages/gnome.scm (gnome-shell)[arguments]: In 'record-absolute-file-names' phase, record file name of 'gkbd-keyboard-display'. [inputs]: Add LIBGNOMEKBD.
2019-04-01gnu: gnome-shell: Store absolute file name of 'ibus-daemon'.Ludovic Courtès
* gnu/packages/gnome.scm (gnome-shell)[arguments]: Add 'record-absolute-file-names' phase.
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