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2020-06-12shepherd: 'read-pid-file/container' terminates the whole process group....This mirrors a change made in the Shepherd 0.8.0. Previously, upon startup failure, we could have left processes behind. * gnu/build/shepherd.scm (read-pid-file/container): Kill (- PID) instead of PID. Ludovic Courtès
2020-06-12shepherd: Unblock signals in the child process....Fixes <https://bugs.gnu.org/41791>. Reported by Tobias Geerinckx-Rice <me@tobias.gr>. This change mirrors changes made in the Shepherd 0.8.1, where signals are blocked in the shepherd process in support of 'signalfd'. The regression was introduced with the switch to 0.8.1 in 3f9c62d1a8b345909adaeb22f454ad22554c55a1: child processes would not receive SIGTERM upon 'herd stop SERVICE'. * gnu/build/shepherd.scm <top level>: Autoload (shepherd system). (make-forkexec-constructor/container): Call call to 'sigaction' and 'unblock-signals'. Ludovic Courtès
2020-06-11gnu: Add exercism and dependencies....* gnu/packages/education.scm (exercism): New variable. * gnu/packages/patches/exercism-disable-self-update.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/golang.scm (go-github-com-spf13-afero) (go-github-com-spf13-cast) (go-github-com-spf13-cobra) (go-github-com-spf13-jwalterweatherman) (go-github-com-spf13-viper) (go-github-com-fsnotify-fsnotify) (go-github-com-magiconair-properties) (go-github-com-pelletier-go-toml) (go-github-com-subosito-gotenv) (go-gopkg-in-ini-v1) (go-github-com-mitchellh-mapstructure): New variables. Jakub Kądziołka
2020-06-11gnu: linux-libre: Update to 5.4.46....* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.46. (linux-libre-5.4-pristine-source): Update hash. Mark H Weaver
2020-06-11gnu: linux-libre@5.7: Update to 5.7.2....* gnu/packages/linux.scm (linux-libre-5.7-version): Update to 5.7.128. (linux-libre-5.7-pristine-source): Update hash. Mark H Weaver
2020-06-11gnu: linux-libre@5.6: Remove....Users of linux-libre-5.6 should migrate to version 5.7. * gnu/packages/linux.scm (deblob-scripts-5.6, linux-libre-5.6-version) (linux-libre-5.6-pristine-source, linux-libre-5.6-source) (linux-libre-headers-5.6, linux-libre-arm-generic-5.6) (linux-libre-arm64-generic-5.6): Remove variables. Mark H Weaver
2020-06-11gnu: linux-libre@4.19: Update to 4.19.128....* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.128. (linux-libre-4.19-pristine-source): Update hash. Mark H Weaver
2020-06-11gnu: linux-libre@4.14: Update to 4.14.184....* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.184. (linux-libre-4.14-pristine-source): Update hash. Mark H Weaver
2020-06-11gnu: linux-libre@4.9: Update to 4.9.227....* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.227. (linux-libre-4.9-pristine-source): Update hash. Mark H Weaver
2020-06-11gnu: linux-libre@4.4: Update to 4.4.227....* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.227. (linux-libre-4.4-pristine-source): Update hash. Mark H Weaver
2020-06-11gnu: adns: Update to 1.6.0....* gnu/packages/adns.scm (adns): Update to 1.6.0. [source]: Use https. [native-inputs]: Add m4. Efraim Flashner
2020-06-11gnu: subversion: Update to 1.14.0....* gnu/packages/version-control.scm (subversion): Update to 1.14.0. [source]: Update source URI. Efraim Flashner
2020-06-11gnu: nghttp2: Replace with version 1.41 [fixes CVE-2020-11080]....* gnu/packages/web.scm (nghttp2-1.41): New variable. (nghttp2)[replacement]: New field. Ludovic Courtès
2020-06-11packages: 'package-grafts' returns grafts for all the relevant outputs....Fixes <https://bugs.gnu.org/41796>. Reported by Jakub Kądziołka <kuba@kadziolka.net>. * guix/packages.scm (input-graft): Add 'output' parameter and honor it. Add OUTPUT to the cache key. (input-cross-graft): Likewise. (fold-bag-dependencies): Operate on inputs instead of nodes. Turn VISITED into a vhash instead of a set. Pass PROC HEAD and OUTPUT instead of just HEAD. (bag-grafts): Adjust accordingly. * tests/packages.scm ("package-grafts, dependency on several outputs"): New test. Ludovic Courtès
2020-06-11gnu: r-with-tests, r-minimal: Update to 4.0.1....* gnu/packages/statistics.scm (r-with-tests, r-minimal): Update to 4.0.1. Ricardo Wurmus
2020-06-11gnu: r-brms: Update to 2.13.0....* gnu/packages/cran.scm (r-brms): Update to 2.13.0. Ricardo Wurmus
2020-06-11gnu: r-crochet: Update to 2.3.0....* gnu/packages/cran.scm (r-crochet): Update to 2.3.0. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-11gnu: r-openmx: Update to 2.17.4....* gnu/packages/cran.scm (r-openmx): Update to 2.17.4. Ricardo Wurmus
2020-06-11gnu: r-stanheaders: Update to 2.21.0-5....* gnu/packages/cran.scm (r-stanheaders): Update to 2.21.0-5. [propagated-inputs]: Add r-rcppeigen and r-rcppparallel. Ricardo Wurmus
2020-06-11gnu: r-semtools: Update to 0.5-3....* gnu/packages/cran.scm (r-semtools): Update to 0.5-3. Ricardo Wurmus
2020-06-11gnu: r-sem: Update to 3.1-11....* gnu/packages/cran.scm (r-sem): Update to 3.1-11. Ricardo Wurmus
2020-06-11gnu: r-emplik: Update to 1.1-1....* gnu/packages/cran.scm (r-emplik): Update to 1.1-1. Ricardo Wurmus
2020-06-11gnu: r-rsvg: Update to 2.1....* gnu/packages/cran.scm (r-rsvg): Update to 2.1. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-11gnu: r-actuar: Update to 3.0-0....* gnu/packages/cran.scm (r-actuar): Update to 3.0-0. Ricardo Wurmus
2020-06-11gnu: r-gdina: Update to 2.8.0....* gnu/packages/cran.scm (r-gdina): Update to 2.8.0. Ricardo Wurmus
2020-06-11gnu: r-seewave: Update to 2.1.6....* gnu/packages/cran.scm (r-seewave): Update to 2.1.6. [inputs]: Add libsndfile. Ricardo Wurmus
2020-06-11gnu: r-elasticnet: Update to 1.3....* gnu/packages/cran.scm (r-elasticnet): Update to 1.3. Ricardo Wurmus
2020-06-11gnu: r-showtext: Update to 0.8-1....* gnu/packages/cran.scm (r-showtext): Update to 0.8-1. Ricardo Wurmus
2020-06-11gnu: r-showtextdb: Update to 3.0....* gnu/packages/cran.scm (r-showtextdb): Update to 3.0. Ricardo Wurmus
2020-06-11gnu: r-abcrlda: Update to 1.0.3....* gnu/packages/cran.scm (r-abcrlda): Update to 1.0.3. Ricardo Wurmus
2020-06-11gnu: r-rgdal: Update to 1.5-10....* gnu/packages/cran.scm (r-rgdal): Update to 1.5-10. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-11gnu: r-parameters: Update to 0.8.0....* gnu/packages/cran.scm (r-parameters): Update to 0.8.0. Ricardo Wurmus
2020-06-11gnu: r-systemfonts: Update to 0.2.3....* gnu/packages/cran.scm (r-systemfonts): Update to 0.2.3. Ricardo Wurmus
2020-06-11gnu: r-rhpcblasctl: Update to 0.20-137....* gnu/packages/cran.scm (r-rhpcblasctl): Update to 0.20-137. Ricardo Wurmus
2020-06-11gnu: r-ggraph: Update to 2.0.3....* gnu/packages/cran.scm (r-ggraph): Update to 2.0.3. Ricardo Wurmus
2020-06-11gnu: r-europepmc: Update to 0.4....* gnu/packages/cran.scm (r-europepmc): Update to 0.4. [propagated-inputs]: Add r-rlang, r-tibble, and r-tidyr. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-11gnu: r-msigdbr: Update to 7.1.1....* gnu/packages/cran.scm (r-msigdbr): Update to 7.1.1. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-11gnu: r-bookdown: Update to 0.19....* gnu/packages/cran.scm (r-bookdown): Update to 0.19. Ricardo Wurmus
2020-06-11gnu: r-rms: Update to 6.0-0....* gnu/packages/cran.scm (r-rms): Update to 6.0-0. [propagated-inputs]: Add r-cluster, r-digest, and r-mass. Ricardo Wurmus
2020-06-11gnu: r-polspline: Update to 1.1.19....* gnu/packages/cran.scm (r-polspline): Update to 1.1.19. Ricardo Wurmus
2020-06-11gnu: r-lemon: Update to 0.4.5....* gnu/packages/cran.scm (r-lemon): Update to 0.4.5. [native-inputs]: Add r-knitr. Ricardo Wurmus
2020-06-11gnu: r-picante: Update to 1.8.2....* gnu/packages/cran.scm (r-picante): Update to 1.8.2. Ricardo Wurmus
2020-06-11gnu: r-lavaan: Update to 0.6-6....* gnu/packages/cran.scm (r-lavaan): Update to 0.6-6. Ricardo Wurmus
2020-06-11gnu: r-cmprsk: Update to 2.2-10....* gnu/packages/cran.scm (r-cmprsk): Update to 2.2-10. Ricardo Wurmus
2020-06-11gnu: r-gmp: Update to 0.6-0....* gnu/packages/cran.scm (r-gmp): Update to 0.6-0. Ricardo Wurmus
2020-06-11gnu: r-bigrquery: Update to 1.3.1....* gnu/packages/cran.scm (r-bigrquery): Update to 1.3.1. Ricardo Wurmus
2020-06-11gnu: r-iso: Update to 0.0-18.1....* gnu/packages/cran.scm (r-iso): Update to 0.0-18.1. Ricardo Wurmus
2020-06-11gnu: r-sjplot: Update to 2.8.4....* gnu/packages/cran.scm (r-sjplot): Update to 2.8.4. Ricardo Wurmus
2020-06-11gnu: r-effectsize: Update to 0.3.1....* gnu/packages/cran.scm (r-effectsize): Update to 0.3.1. Ricardo Wurmus
2020-06-11gnu: r-bayesplot: Update to 1.7.2....* gnu/packages/cran.scm (r-bayesplot): Update to 1.7.2. [native-inputs]: Add r-knitr. Ricardo Wurmus
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