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2017-12-14gnu: python-scikit-learn: Patch test non-determinism....* gnu/packages/patches/python-scikit-learn-fix-test-non-determinism.patch: New file. * gnu/packages/machine-learning.scm (python-scikit-learn)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it. Ben Woodcroft
2017-12-14gnu: diamond: Update to 0.9.14....* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.14. Ben Woodcroft
2017-12-14gnu: gucharmap: Use glib-or-gtk-build-system....* gnu/packages/gnome.scm (gucharmap): Use glib-or-gtk-build-system. Andy Wingo
2017-12-13gnu: Erlang: Update to 20.1.7 [fixes CVE-2017-1000385]....* gnu/packages/erlang.scm (erlang): Update to 20.1.7 (native-inputs): Use version-major+minor in the URI of erlang-manpages. Leo Famulari
2017-12-14gnu: youtube-dl: Update to 2017.12.14....* gnu/packages/video.scm (youtube-dl): Update to 2017.12.14. Tobias Geerinckx-Rice
2017-12-14gnu: r-caret: Update to 6.0-78....* gnu/packages/statistics.scm (r-caret): Update to 6.0-78 Tobias Geerinckx-Rice
2017-12-14gnu: r-domc: Update to 1.3.5....* gnu/packages/statistics.scm (r-domc): Update to 1.3.5 Tobias Geerinckx-Rice
2017-12-14gnu: perl-text-bibtex: Update to 0.85....* gnu/packages/tex.scm (perl-text-bibtex): Update to 0.85 Tobias Geerinckx-Rice
2017-12-14gnu: perl-test-requires: Update to 0.10....* gnu/packages/perl-check.scm (perl-test-requires): Update to 0.10 Tobias Geerinckx-Rice
2017-12-14gnu: perl-test-pod: Update to 1.51....* gnu/packages/perl-check.scm (perl-test-pod): Update to 1.51 [source]: Update URI. Tobias Geerinckx-Rice
2017-12-14gnu: perl-test-mocktime: Update to 0.15....* gnu/packages/perl-check.scm (perl-test-mocktime): Update to 0.15 [propagated-inputs]: Add perl-time-piece. Tobias Geerinckx-Rice
2017-12-14gnu: Add perl-time-piece....* gnu/packages/perl.scm (perl-time-piece): New public variable. Tobias Geerinckx-Rice
2017-12-13hydra: Pre-load the compiler....Starting from Guile 2.2.3, '%fresh-auto-compile' does what it says and would auto-compile everything, including the compiler (see <https://bugs.gnu.org/29226>). * build-aux/hydra/gnu-system.scm: Call 'compile'. Ludovic Courtès
2017-12-13hydra: Invalidate derivation caches after each architecture evaluation....This reduces max RSS from 1.3G to 1.0G. * guix/derivations.scm (invalidate-derivation-caches!): New procedure. * build-aux/hydra/gnu-system.scm (hydra-jobs): Use it. Add 'format' call. Ludovic Courtès
2017-12-13memoization: Add 'invalidate-memoization!....* guix/memoization.scm (%make-hash-table*): When not profiling, add the new table to %MEMOIZATION-TABLES. (invalidate-memoization!): New procedure. Ludovic Courtès
2017-12-13derivations: Don't memoize 'derivation-hash'....This has little or no run-time impact and slightly reduces the memory footprint. * guix/derivations.scm (derivation-hash): Replace 'mlambda' with 'lambda'. Ludovic Courtès
2017-12-13derivations: Split 'derivation-hash' in two procedures....* guix/derivations.scm (derivation/masked-inputs): New procedure. (derivation-hash): Use it instead of the inline code. Ludovic Courtès
2017-12-13gnu: notmuch: Move elisp directory and generate autoloads....* gnu/packages/mail.scm (notmuch)[arguments]: Move elisp files to share/emacs/site-lisp/guix.d/notmuch-<version>. Add make-autoloads phase. Arun Isaac
2017-12-13pull: Add (guix profiling) to the build environment....Reported by Ricardo Wurmus. * build-aux/build-self.scm (build): Add (guix profiling). Ludovic Courtès
2017-12-13Revert "derivations: 'derivation-hash' assumes inputs are coalesced."...This reverts commit 1d008d9f8c44dfdb808235d451b72f255e72f103. Reported by Rutger Helling <rhelling@mykolab.com>. Fixes <https://bugs.gnu.org/29689>. Ludovic Courtès
2017-12-13gnu: polyml: Update to 5.7.1....* gnu/packages/sml.scm (polyml): Update to 5.7.1. Tobias Geerinckx-Rice
2017-12-13gnu: guile-gdbm-ffi: Install documentation....* gnu/packages/guile.scm (guile-gdbm-ffi)[arguments]: Install README.md and some examples. Tidy up MKDIR-P calls. Tobias Geerinckx-Rice
2017-12-13gnu: gtksourceview: Update to 3.24.6....* gnu/packages/gtk.scm (gtksourceview): Update to 3.24.6 Tobias Geerinckx-Rice
2017-12-13vm: Use qemu drive device parameter....* gnu/build/vm.scm (load-in-linux-vm): Use device parameter to define drive device. Mathieu Othacehe
2017-12-13gnu: cgit: Patch absolute file names....* gnu/packages/version-control.scm (cgit): Patch absolute file names. Oleg Pykhalov
2017-12-12gnu: Add krita....* gnu/packages/kde.scm (krita): New variable. Signed-off-by: Kei Kebreau <kkebreau@posteo.net> Mark Meyer
2017-12-12doc: Fix typo....* doc/guix.texi: Add missing ‘@*’ to copyright headers. Tobias Geerinckx-Rice
2017-12-12gnu: xfig: Update to 3.2.6a....* gnu/packages/xfig.scm (xfig): Update to 3.2.6a. [native-inputs]: Remove groff, imake, makedepend. Add desktop-file-utils. [inputs]: Remove libxmu and zlib. [arguments]: Remove custom phases. Add a ‘strip-bogus-exec-prefix’ phase. Run the rudimentary test suite. Tobias Geerinckx-Rice
2017-12-12gnu: services: Add php-fpm....* gnu/services/web.scm (<php-fpm-configuration>, <php-fpm-process-manager-configuration>): New record types. (php-fpm-configuration?, php-fpm-process-manager-configuration?, php-fpm-service-type, nginx-php-location): New procedures. * doc/guix.texi (Web-Services): Document php-fpm service. * gnu/tests/web.scm: Add php-fpm system test. Signed-off-by: Christopher Baines <mail@cbaines.net> nee
2017-12-12gnu: meson: Update to 0.44.0....* gnu/packages/build-tools.scm (meson): Update to 0.44.0 Tobias Geerinckx-Rice
2017-12-12gnu: miniupnpc: Update to 2.0.20171212....* gnu/packages/upnp.scm (miniupnpc): Update to 2.0.20171212. Tobias Geerinckx-Rice
2017-12-12gnu: global: Update to 6.6....* gnu/packages/code.scm (global): Update to 6.6. Efraim Flashner
2017-12-12derivations: 'derivation-hash' assumes inputs are coalesced....* guix/derivations.scm (derivation-hash): Remove redundant 'coalesce-duplicate-inputs' call. Ludovic Courtès
2017-12-12derivations: Use 'define-immutable-record-type' as appropriate....This is a followup to dc673fa1131fb5d1e5ca29acb4a693cfb906986f. * guix/derivations.scm (<derivation-output>, <derivation-input>): Use 'define-immutable-record-type'. Ludovic Courtès
2017-12-12memoization: Profiling support keeps track of lookups and hits....* guix/memoization.scm (<cache>): New record type. (define-lookup-procedure, define-update-procedure): New macros. (cache-ref, cacheq-ref, cache-set!, cacheq-set!): New procedures. (cached/mv, cachedq/mv, cached, cachedq): Use them instead of 'hash-ref' and 'hash-set!'. (%make-hash-table*): When 'profiled?' returns true, return a <cache> object. (define-cache-procedure): Adjust to show cache lookups and hits. Ludovic Courtès
2017-12-12memoization: Add profiling support....* guix/memoization.scm (%memoization-tables): New variable. (%make-hash-table*, show-memoization-tables): New procedures. (make-hash-table*): New macro. Add top-level call to 'register-profiling-hook!'. (memoize): Adjust to pass the resulting procedure to 'make-hash-table*'. (%mlambda): Likewise. Ludovic Courtès
2017-12-12Add (guix profiling)....* guix/profiling.scm: New file. * Makefile.am (MODULES): Add it. * guix/store.scm (record-operation): Use 'profiled?' and 'register-profiling-hook!'. Ludovic Courtès
2017-12-12gnu: xfig, transfig: Update home pages....* gnu/packages/xfig.scm (xfig, transfig)[home-page]: Use SourceForge.net. Tobias Geerinckx-Rice
2017-12-12gnu: Add uthash....* gnu/packages/datastructures.scm (uthash): New public variable. Tobias Geerinckx-Rice
2017-12-12gnu: Add fbcat....* gnu/packages/linux.scm (fbcat): New public variable. Tobias Geerinckx-Rice
2017-12-12gnu: Add snapscreenshot....* gnu/packages/linux.scm (snapscreenshot): New public variable. Tobias Geerinckx-Rice
2017-12-11gnu: linux-libre: Update to 4.14.5....* gnu/packages/linux.scm (%linux-libre-version): Update to 4.14.5. (%linux-libre-hash): Update hash. Mark H Weaver
2017-12-11gnu: linux-libre@4.9: Update to 4.9.68....* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.68. Mark H Weaver
2017-12-11gnu: linux-libre@4.4: Update to 4.4.105....* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.105. Mark H Weaver
2017-12-12gnu: whois: Update to 5.2.19....* gnu/packages/networking.scm (whois): Update to 5.2.19. [arguments]: Don't set HAVE_LIBIDN in 'setenv' phase; this is now autodetected. [native-inputs]: Add PKG-CONFIG. Marius Bakke
2017-12-12gnu: Remove ffmpeg@3.3....The reason this was required was because of a regression in ffmpeg 3.4; see <https://trac.ffmpeg.org/ticket/6775>. * gnu/packages/gstreamer.scm (gst-libav)[inputs]: Change FFMPEG-3.3 to FFMPEG. * gnu/packages/video.scm (ffmpeg-3.3): Remove variable. Marius Bakke
2017-12-12gnu: ffmpeg: Update to 3.4.1....* gnu/packages/video.scm (ffmpeg): Update to 3.4.1. Marius Bakke
2017-12-12gnu: Add cli-visualizer....* gnu/packages/audio.scm (cli-visualizer): New variable. Oleg Pykhalov
2017-12-11services: web: Switch nginx related functions to use match-record....As this is less prone to mistakes than match. * gnu/services/web.scm (default-nginx-config, nginx-activation, nginx-shepherd-service): Switch from using match-lambda to match-record. Christopher Baines
2017-12-11services: web: Add support for configuring the nginx server names hash....The nginx service can fail to start if the server names hash bucket size is too small, which can happen on some systems, and when using QEMU, depending on the CPU. * gnu/services/web.scm (<nginx-configuration>): Add server-names-hash-bucket-size and server-names-hash-bucket-max-size. (default-nginx-config): Add support for the new hash bucket size parameters. (nginx-service, nginx-activation): Pass the new hash bucket size parameters through to the default-nginx-config procedure. * doc/guix.texi (Web Services): Document the new hash bucket size parameters. Christopher Baines