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2015-12-24gnu: Add File::Slurp::Tiny.Ricardo Wurmus
* gnu/packages/perl.scm (perl-file-slurp-tiny): New variable.
2015-12-24gnu: Add HTML::Template.Ricardo Wurmus
* gnu/packages/web.scm (perl-html-template): New variable.
2015-12-24gnu: Add XML::Compile.Ricardo Wurmus
* gnu/packages/xml.scm (perl-xml-compile): New variable.
2015-12-24gnu: Add XML::Compile::Tester.Ricardo Wurmus
* gnu/packages/xml.scm (perl-xml-compile-tester): New variable.
2015-12-24gnu: Add Log::Report.Ricardo Wurmus
* gnu/packages/perl.scm (perl-log-report): New variable.
2015-12-24gnu: Add Log::Report::Optional.Ricardo Wurmus
* gnu/packages/perl.scm (perl-log-report-optional): New variable.
2015-12-24gnu: Add String::Print.Ricardo Wurmus
* gnu/packages/perl.scm (perl-string-print): New variable.
2015-12-24gnu: Add Unicode::LineBreak.Ricardo Wurmus
* gnu/packages/perl.scm (perl-unicode-linebreak): New variable.
2015-12-24gnu: Add MIME::Charset.Ricardo Wurmus
* gnu/packages/perl.scm (perl-mime-charset): New variable.
2015-12-24gnu: gusb: Update home-page.Leo Famulari
* gnu/packages/gnome.scm (gusb)[home-page]: Update home-page.
2015-12-23gnu: icecat: Update to 38.5.0-gnu1.Mark H Weaver
* gnu/packages/patches/icecat-CVE-2015-7201-pt1.patch, gnu/packages/patches/icecat-CVE-2015-7201-pt2.patch, gnu/packages/patches/icecat-CVE-2015-7201-pt3.patch, gnu/packages/patches/icecat-CVE-2015-7205.patch, gnu/packages/patches/icecat-CVE-2015-7210.patch, gnu/packages/patches/icecat-CVE-2015-7212.patch, gnu/packages/patches/icecat-CVE-2015-7213-pt1.patch, gnu/packages/patches/icecat-CVE-2015-7213-pt2.patch, gnu/packages/patches/icecat-CVE-2015-7214.patch, gnu/packages/patches/icecat-CVE-2015-7222-pt1.patch, gnu/packages/patches/icecat-CVE-2015-7222-pt2.patch, gnu/packages/patches/icecat-CVE-2015-7222-pt3.patch, gnu/packages/patches/icecat-freetype-2.6.patch: Delete files. * gnu-system.am (dist_patch_DATA): Remove them. * gnu/packages/gnuzilla.scm (icecat): Update to 38.5.0-gnu1. [source]: Remove patches.
2015-12-23gnu: nss: Update to 3.20.2.Mark H Weaver
* gnu/packages/gnuzilla.scm (nss): Update to 3.20.2.
2015-12-23gnu: ruby-nokogiri: Upgrade to 1.6.7.1.Ben Woodcroft
* gnu/packages/ruby.scm (ruby-nokogiri): Upgrade to 1.6.7.1.
2015-12-23gnu: Add ruby-mini-portile-2.Ben Woodcroft
* gnu/packages/ruby.scm (ruby-mini-portile-2): New variable.
2015-12-23gnu: icedtea7: Update to 2.6.3.Ricardo Wurmus
* gnu/packages/java.scm (icedtea7): Update to 2.6.3.
2015-12-23gnu: icedtea6: Update to 1.13.9.Ricardo Wurmus
* gnu/packages/java.scm (icedtea6): Update to 1.13.9.
2015-12-22gnu: libmicrohttpd: Update to 0.9.48.Efraim Flashner
* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.48.
2015-12-22gnu: parallel: Update to 20151222.Efraim Flashner
* gnu/packages/parallel.scm (parallel): Update to 20151222.
2015-12-22gnu: sipwitch: Update to 1.9.15.Efraim Flashner
* gnu/packages/telephony.scm (sipwitch): Update to 1.9.15.
2015-12-22gnu: ucommon: Update to 7.0.0.Efraim Flashner
* gnu/packages/telephony.scm (ucommon): Update to 7.0.0. [inputs]: Add gnutls.
2015-12-22gnu: isc-dhcp: Disable parallel build.Mark H Weaver
* gnu/packages/admin.scm (isc-dhcp)[arguments]: Disable parallel build.
2015-12-21gnu: isc-dhcp: Update to 4.3.3; update bundled bind to 9.9.8-P2.Mark H Weaver
Fixes CVE-2015-8000 and CVE-2015-8461. * gnu/packages/admin.scm (isc-dhcp): Update to 4.3.3. [inputs]: Add 'bind-source-tarball'. [arguments]: Use modify-phases. Add 'replace-bundled-bind' phase. In 'post-configure' phase, avoid hard-coding version numbers of bundled bind.
2015-12-21gnu: bind-utils: Update to 9.10.3-P2.Mark H Weaver
* gnu/packages/dns.scm (bind-utils): Update to 9.10.3-P2. [source]: Use HTTP URI instead of FTP.
2015-12-22file-systems: The 'device' field can be a UUID (bytevector).Ludovic Courtès
Previously a wrong-type-arg error would be raised when a file system with a UUID (bytevector) field was encountered. * gnu/system.scm (other-file-system-services)[device-mappings]: Check whether FS's device is a string.
2015-12-22file-systems: Add a 'mount?' field.Ludovic Courtès
Fixes <http://bugs.gnu.org/22176>. Reported by Florian Paul Schmidt <mista.tapas@gmx.net>. * gnu/system/file-systems.scm (<file-system>)[mount?]: New field. (file-system->spec): Adjust accordingly. * gnu/services/base.scm (file-system-dmd-service): Return the empty list when FILE-SYSTEM has 'mount?' set to false. (user-processes-service): Select the subset of FILE-SYSTEMS that matches 'file-system-mount?'. * doc/guix.texi (File Systems): Document it.
2015-12-22services: Add 'fstab-service-type'.Ludovic Courtès
* gnu/services/base.scm (file-system->fstab-entry) (file-systems->fstab): New procedures. (fstab-service-type): New variable. * gnu/services/base.scm (file-system-dmd-service): New procedure, taken from... (file-system-service-type): ... here. * gnu/system.scm (essential-services): Add FSTAB-SERVICE-TYPE instance.
2015-12-21build: Add bioconductor-uri procedure.Ricardo Wurmus
* guix/build-system/r.scm (bioconductor-uri): New procedure.
2015-12-21gnu: Add vmpk.Ricardo Wurmus
* gnu/packages/music.scm (vmpk): New variable.
2015-12-21gnu: Add drumstick.Ricardo Wurmus
* gnu/packages/music.scm (drumstick): New variable.
2015-12-21gnu: letsencrypt and acme: Update to 0.1.1.Leo Famulari
These packages should be updated together. * gnu/packages/tls.scm (letsencrypt): Update to 0.1.1. [source]: Use pypi-uri. * gnu/packages/tls.scm (acme): Update to 0.1.1. [source]: Use pypi-uri.
2015-12-21gnu: ffmpeg: Update to 2.8.4.Efraim Flashner
* gnu/packages/video.scm (ffmpeg): Update to 2.8.4.
2015-12-21doc: Be more explicit in example of file-systems configuration.Leo Famulari
* gnu/system/examples/bare-bones.tmpl (file-systems): Change device label. * gnu/system/examples/desktop.tmpl (file-systems): Likewise.
2015-12-21doc: Explain significance of partition labels.Leo Famulari
* doc/guix.texi (Preparing for Installation): Point out relationship between partition labels and the file-system configuration.
2015-12-21gnu: grub: Add fix for CVE-2015-8730.Leo Famulari
* gnu/packages/patches/grub-CVE-2015-8370.patch: New file. * gnu-system.am (dist_patch_DATA): Register patch. * gnu/packages/grub.scm: Apply patch.
2015-12-21gnu: Add GenomicRanges.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-genomicranges): New variable.
2015-12-21gnu: Add XVector.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-xvector): New variable.
2015-12-21gnu: Add GenomeInfoDb.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-genomeinfodb): New variable.
2015-12-21gnu: Add IRanges.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-iranges): New variable.
2015-12-21gnu: Add S4Vectors.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-s4vectors): New variable.
2015-12-21gnu: Add BiocGenerics.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-biocgenerics): New variable.
2015-12-21gnu: Add r-acsnminer.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-acsnminer): New variable.
2015-12-21gnu: Add r-gridextra.Ricardo Wurmus
* gnu/packages/statistics.scm (r-gridextra): New variable.
2015-12-21gnu: Add r-gtable.Ricardo Wurmus
* gnu/packages/statistics.scm (r-gtable): New variable.
2015-12-21gnu: Add r-rmarkdown.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rmarkdown): New variable. * gnu/packages/haskell.scm: Do not select libxml2 from the xml module to prevent circular package module imports.
2015-12-21gnu: Add r-catools.Ricardo Wurmus
* gnu/packages/statistics.scm (r-catools): New variable.
2015-12-21gnu: Add r-bitops.Ricardo Wurmus
* gnu/packages/statistics.scm (r-bitops): New variable.
2015-12-21gnu: Add AdaptiveSparsity.Ricardo Wurmus
* gnu/packages/machine-learning.scm (r-adaptivesparsity): New variable.
2015-12-21gnu: Add r-rcpparmadillo.Ricardo Wurmus
* gnu/packages/maths.scm (armadillo-for-rcpparmadillo): New variable. * gnu/packages/statistics.scm (r-rcpparmadillo): New variable.
2015-12-21gnu: Add armadillo.Ricardo Wurmus
* gnu/packages/maths.scm (armadillo): New variable.
2015-12-21doc: Fix outdated claim about CRAN importer.Ricardo Wurmus
* doc/guix.texi: The CRAN importer no longer extracts information from the HTML package description but from the package's DESCRIPTION file.
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