| Age | Commit message (Expand) | Author |
|---|
| 2016-07-28 | gnu: r-annotationdbi: Update to 1.34.4....* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.34.4.
| Ben Woodcroft |
| 2016-07-28 | gnu: r-biocparallel: Update to 1.6.3....* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.6.3.
| Ben Woodcroft |
| 2016-07-28 | gnu: r-biostrings: Update to 2.40.2....* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.40.2.
| Ben Woodcroft |
| 2016-07-28 | gnu: r-summarizedexperiment: Update to 1.2.3....* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.2.3.
| Ben Woodcroft |
| 2016-07-28 | gnu: r-genomicalignments: Update to 1.8.4....* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.8.4.
| Ben Woodcroft |
| 2016-07-28 | gnu: r-rtracklayer: Update to 1.32.2....* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.32.2.
| Ben Woodcroft |
| 2016-07-28 | gnu: r-genomeinfodb: Update to 1.8.3....* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.8.3.
| Ben Woodcroft |
| 2016-07-28 | gnu: r-s4vectors: Update to 0.10.2....* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.10.2.
| Ben Woodcroft |
| 2016-07-28 | gnu: mysql: Update to 5.7.13 [fixes CVE-2016-{3477,3521,3615,5440}]....* gnu/packages/patches/mysql-fix-failing-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/databases.scm (mysql): Update to 5.7.13.
| Leo Famulari |
| 2016-07-28 | gnu: the-silver-searcher: Update to 0.32.0....* gnu/packages/code.scm(the-silver-searcher): Update to 0.32.0.
| Tomáš Čech |
| 2016-07-27 | gnu: imagemagick: Update to 6.9.5-3....* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.5-3.
| Leo Famulari |
| 2016-07-27 | gnu: mariadb: Update to 10.1.16....* gnu/packages/databases.scm (mariadb): Update to 10.1.16.
| Leo Famulari |
| 2016-07-27 | gnu: calibre: Update to 2.63.0....* gnu/packages/ebook.scm (calibre): Update to 2.63.0.
[inputs]: Remove unnecessary imagemagick dependency.
[phases]: Use modify-phases.
* gnu/packages/patches/calibre-drop-unrar.patch: Update
for new version.
Signed-off-by: Roel Janssen <roel@gnu.org>
| Alex Griffin |
| 2016-07-27 | system: Source /etc/environment before $HOME/.guix-profile/etc/profile....* gnu/system.scm (operating-system-etc-service) <profile>: Move sourcing
of /etc/environment before that of $HOME/.guix-profile/etc/profile.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Carlos Sánchez de La Lama |
| 2016-07-27 | gnu: krona-tools: Update to 2.7....* gnu/packages/web.scm (krona-tools): Update to 2.7.
[arguments]: Delete 'build' phase. Install new scripts.
| Ben Woodcroft |
| 2016-07-27 | gnu: diamond: Update to 0.8.16....* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.16.
| Ben Woodcroft |
| 2016-07-27 | gnu: guix: Update revision number in version....This is a follow-up to commit 95af24a2f1fb58eb9e6ee902c9330534f0aca9f3.
Reported by Alex Kost <alezost@gmail.com>.
| Andreas Enge |
| 2016-07-27 | tests: Use unbuffered input ports when decompressing from 'guix publish'....Fixes <http://bugs.gnu.org/24060>.
Reported by Chris Marusich <cmmarusich@gmail.com>.
* tests/publish.scm (http-get-port): Explicitly call
'open-socket-for-uri' and add calls to 'setvbuf'.
| Ludovic Courtès |
| 2016-07-27 | zlib: Protect against non-empty port internal buffers....* guix/zlib.scm (make-gzip-input-port)[gzfile]: Error out
if (drain-input port) returns a non-empty string.
* guix/zlib.scm (make-gzip-output-port)[gzfile]: Call 'force-output'.
| Ludovic Courtès |
| 2016-07-27 | zlib: Clarify when 'gzread!' can return zero....* guix/zlib.scm (gzread!): Augment docstring to clarify when zero is
returned (based on reading zlib code).
(make-gzip-input-port)[read!]: Remove scary comment.
| Ludovic Courtès |
| 2016-07-27 | gnu: magit: Fix rebase commands that require perl....* gnu/packages/emacs.scm (magit)[inputs]: Add 'perl'.
[arguments]: Adjust 'patch-exec-paths' phase to make some rebase
commands find 'perl'.
Signed-off-by: Alex Kost <alezost@gmail.com>
| Alex Griffin |
| 2016-07-27 | gnu: Add httping....* gnu/packages/networking.scm (httping): New variable.
| Tobias Geerinckx-Rice |
| 2016-07-27 | gnu: Add missing copyright symbol....* gnu/packages/networking.scm: Add missing "©" to header comments.
| Tobias Geerinckx-Rice |
| 2016-07-26 | gnu: gmime: Remove 'gpg' to 'gpg2' substitution....* gnu/packages/mail.scm (gmime)[arguments]: Remove the substitution which
previously changed 'gpg' to 'gpg2' in 'patch-paths-in-tests' phase.
Signed-off-by: Leo Famulari <leo@famulari.name>
| ng0 |
| 2016-07-26 | gnu: dmd: Remove package, superseded by shepherd....* gnu/packages/admin.scm (dmd): Remove variable.
| Andreas Enge |
| 2016-07-26 | gnu: Add perl-db-file....* gnu/packages/databases.scm (perl-db_file): New variable.
Signed-off-by: Andreas Enge <andreas@enge.fr>
| Danny Milosavljevic |
| 2016-07-26 | profiles: Output in 'package->manifest-entry' defaults to "out"....Fixes <http://bugs.gnu.org/24029>.
Reported by Dylan Jeffers <sapientech@openmailbox.org>.
* guix/profiles.scm (package->manifest-entry): Change #:output to
default to "out".
(packages->manifest): Add 'package?' in second 'match' clause.
* tests/profiles.scm ("package->manifest-entry defaults to \"out\""):
New test.
| Ludovic Courtès |
| 2016-07-26 | environment: Set 'GUIX_ENVIRONMENT' to the profile....* guix/scripts/environment.scm (create-environment): Set
'GUIX_ENVIRONMENT' to PROFILE.
* tests/guix-environment.sh: Test it.
* doc/guix.texi (Invoking guix environment): Document it.
| Ludovic Courtès |
| 2016-07-26 | import: pypi: Correctly handle new-style URLs....Fixes <http://bugs.gnu.org/23997>.
* guix/import/pypi.scm (guix-package->pypi-name): Rewrite using
'basename' and 'hyphen-package-name->name+version'.
* tests/pypi.scm ("guix-package->pypi-name, old URL style")
("guix-package->pypi-name, new URL style"): New tests.
| Ludovic Courtès |
| 2016-07-26 | doc: Explain authentication in "System Installation"....Suggested by Vincent Legoll <vincent.legoll@gmail.com>.
* doc/guix.texi (OPENPGP-SIGNING-KEY-ID): New constant.
(Binary Installation): Use it.
(USB Stick Installation): Copy and adjust the authentication bit from
"Binary Installation".
| Ludovic Courtès |
| 2016-07-26 | doc: Better illustration use of package revision numbers....* doc/guix.texi (Version Numbers): Add the
revision to the example of the git package used in 7.6.3.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| ng0 |
| 2016-07-26 | gnu: icecat: Install icons....* gnu/packages/gnuzilla.scm (icecat)[arguments]: Add
'install-icons' phase.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
| Alex Griffin |
| 2016-07-26 | gnu: Add haveged....* gnu/packages/linux.scm (haveged): New variable.
| Tobias Geerinckx-Rice |
| 2016-07-26 | gnu: Add perceptualdiff....* gnu/packages/image.scm (perceptualdiff): New variable.
| Tobias Geerinckx-Rice |
| 2016-07-26 | gnu: linux-libre@4.1: Update to 4.1.28....* gnu/packages/linux.scm (linux-libre-4.1): Update to 4.1.28.
| Mark H Weaver |
| 2016-07-26 | gnu: linux-libre: Update to 4.7....* gnu/packages/linux.scm (linux-libre): Update to 4.7.
* gnu/packages/linux-libre-4.7-x86_64.conf,
gnu/packages/linux-libre-4.7-i686.conf: New files.
* gnu/packages/linux-libre-4.6-x86_64.conf,
gnu/packages/linux-libre-4.6-i686.conf: Delete files.
* Makefile.am (KCONFIGS): Update accordingly.
| Mark H Weaver |
| 2016-07-26 | gnu: calibre: Build with non-modular Qt....* gnu/packages/ebook.scm (calibre)[native-inputs]: Replace QTBASE by QT.
[inputs]: Replace QTBASE by QT and PYTHON2-PYQT by PYTHON2-PYQT-5.5.
This essentially reverts commit 76806c54ed72f8f04079bbb187b186b833c103e1.
Reported by Roel Janssen <roel@gnu.org>.
| Andreas Enge |
| 2016-07-26 | gnu: pyqt: Add versions based on non-modular Qt 5.5....* gnu/packages/qt.scm (python-pyqt-5.5, python2-pyqt-5.5): New variables.
| Andreas Enge |
| 2016-07-25 | gnu: guix: Update development snapshot....* gnu/packages/package-management.scm (guix-devel): Update to 97c8aef.
| Andreas Enge |
| 2016-07-25 | system: Add mapped devices for RAID....* gnu/system/mapped-devices.scm (raid-device-mapping, open-raid-device,
close-raid-device): New variables.
* doc/guix.texi (Mapped Devices): Add documentation for RAID devices,
reorganize documentation for LUKS devices.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
| Andreas Enge |
| 2016-07-25 | doc: Explain when guix edit is read-only....* doc/guix.texi (Invoking guix edit): Explain when you can and can't
edit the recipe.
Signed-off-by: Alex Kost <alezost@gmail.com>
| myglc2 |
| 2016-07-25 | gnu: emacs-solarized-theme: Remove unneeded dependencies....* gnu/packages/emacs.scm (emacs-solarized-theme)[propagated-inputs]:
Remove 'emacs-f' and 'emacs-s'.
| Alex Kost |
| 2016-07-25 | gnu: emacs: Install site-start.el in non-versioned directory....Reported by Ricardo Wurmus on #guix.
* gnu/packages/emacs.scm (emacs)[arguments]: Put "site-start.el" in
"/share/emacs/site-lisp" instead of "/share/emacs/<version>/site-lisp"
to let inherited package with another version find it.
| Alex Kost |
| 2016-07-25 | gnu: Add guile-daemon....* gnu/packages/guile.scm (guile-daemon): New variable.
| Alex Kost |
| 2016-07-25 | gnu: Add guile-xosd....* gnu/packages/guile.scm (guile-xosd): New variable.
| Alex Kost |
| 2016-07-25 | gnu: Add xdpyprobe....* gnu/packages/xdisorg.scm (xdpyprobe): New variable.
| Alex Kost |
| 2016-07-25 | doc: Describe how to make X server find TrueType fonts....* doc/guix.texi (Application Setup): Document how to add TrueType fonts
installed in a Guix profile to the X server font path.
| Alex Kost |
| 2016-07-25 | profiles: Add fonts-dir-file hook....* guix/profiles.scm (fonts-dir-file): New procedure.
(%default-profile-hooks): Add it.
| Alex Kost |
| 2016-07-25 | gnu: mkfontdir: Do not propagate 'mkfontscale'....* gnu/packages/xorg.scm (mkfontdir)[propagated-inputs]: Move
'mkfontscale' to ...
[inputs]: ... here.
[arguments]: Add 'wrap-mkfontdir' phase.
| Alex Kost |
| 2016-07-25 | gnu: Add xfd....* gnu/packages/xorg.scm (xfd): New variable.
| Alex Kost |
