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2019-10-18gnu: r-rhdf5: Update to 2.28.1....* gnu/packages/bioinformatics.scm (r-rhdf5): Update to 2.28.1. Ricardo Wurmus
2019-10-18gnu: r-rhtslib: Update to 1.16.3....* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.16.3. Ricardo Wurmus
2019-10-18gnu: r-mlinterfaces: Update to 1.64.1....* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.64.1. Ricardo Wurmus
2019-10-18gnu: r-rsamtools: Update to 2.0.3....* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 2.0.3. Ricardo Wurmus
2019-10-18gnu: bowtie1: Update to 1.2.3....* gnu/packages/bioinformatics.scm (bowtie1): Update to 1.2.3. Ricardo Wurmus
2019-10-18gnu: guix-data-service: Update to 0.0.1-4.5e2bc7c....* gnu/packages/web.scm (guix-data-service): Update to 0.0.1-4.5e2bc7c. Christopher Baines
2019-10-18gnu: Add httpie....* gnu/packages/python-web.scm (httpie): New variable. Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com> Tanguy Le Carrour
2019-10-18gnu: upx: Fix UCL input....UCL is a runtime dependency, and thus should not be a native input. * gnu/packages/compression.scm (upx)[native-inputs]: Move UCL from here ... [inputs]: ... to here. Marius Bakke
2019-10-18gnu: ucl: Build shared library instead of static....* gnu/packages/compression.scm (ucl)[arguments]: Add "--enable-shared" and "--disable-static" in #:configure-flags. Marius Bakke
2019-10-18gnu: ucl: Update home page....* gnu/packages/compression.scm (ucl)[source, home-page]: Use HTTPS. Marius Bakke
2019-10-18gnu: ucl: Build with the C90 standard....Fixes <https://bugs.gnu.org/37778>. Reported by Pierre Neidhardt <mail@ambrevar.xyz>. * gnu/packages/compression.scm (ucl)[arguments]: New field. Marius Bakke
2019-10-18gnu: encfs: Fix build failure with GCC 7....Fixes <https://bugs.gnu.org/37779>. Reported by Pierre Neidhardt <mail@ambrevar.xyz>. * gnu/packages/crypto.scm (encfs)[arguments]: Add phase 'patch-CMakeLists.txt'. Marius Bakke
2019-10-18gnu: libwacom: Do not build static libraries....* gnu/packages/xdisorg.scm (libwacom)[arguments]: New field. Marius Bakke
2019-10-18gnu: libwacom: Update to 1.1....* gnu/packages/xdisorg.scm (libwacom): Update to 1.1. Marius Bakke
2019-10-18gnu: looking-glass-client: Disable CPU-specific optimizations....* gnu/packages/virtualization.scm (looking-glass-client)[source](modules, snippet): New fields. Marius Bakke
2019-10-18gnu: opensubdiv: Use a regular versioning pattern....* gnu/packages/graphics.scm (opensubdiv)[version]: Use dots instead of underscores between numbers. [source](uri): Adjust accordingly. Marius Bakke
2019-10-18gnu: linux-libre@5.2: Remove....The 5.2 release series has reached end-of-life, and is no longer supported upstream. * gnu/packages/linux.scm (deblob-scripts-5.2, linux-libre-5.2-version) (linux-libre-5.2-pristine-source, linux-libre-5.2-source) (linux-libre-headers-5.2, linux-libre-5.2): Remove variables. Mark H Weaver
2019-10-18gnu: linux-libre: Update to 5.3.7....* gnu/packages/linux.scm (linux-libre-5.3-version): Update to 5.3.7. (linux-libre-5.3-pristine-source): Update hash. Mark H Weaver
2019-10-18gnu: linux-libre@4.19: Update to 4.19.80....* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.80. (linux-libre-4.19-pristine-source): Update hash. Mark H Weaver
2019-10-18gnu: linux-libre@4.14: Update to 4.14.150....* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.150. (linux-libre-4.14-pristine-source): Update hash. Mark H Weaver
2019-10-18gnu: linux-libre@4.9: Update to 4.9.197....* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.197. (linux-libre-4.9-pristine-source): Update hash. Mark H Weaver
2019-10-18gnu: linux-libre@4.4: Update to 4.4.197....* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.197. (linux-libre-4.4-pristine-source): Update hash. Mark H Weaver
2019-10-18gnu: lisp: Add most missing source package for Common Lisp libraries....* gnu/packages/lisp.scm (cl-parse-js, cl-parse-number, cl-iterate, cl-uglify, cl-cffi, cl-sqlite, cl-cffi-gtk, cl-webkit, cl-iolib, cl-ieee-floats, cl-xml, cl-reexport, cl-dexador, cl-cookie, cl-lisp-namespace, cl-trivial-cltl2, cl-introspect-environment, cl-type-i, cl-optima, cl-fare-quasiquote, cl-trivia, cl-mk-string-metrics, cl-str, cl-xmlspam): New variables. Pierre Neidhardt
2019-10-18news: Add CVE ID....* etc/news.scm: Add CVE ID for insecure permissions entry. Ludovic Courtès
2019-10-18lint: Comment out 'cve' checker....* guix/lint.scm (%network-dependent-checkers): Comment out 'cve' checker. Ludovic Courtès
2019-10-18gnu: Add batctl....* gnu/packages/networking.scm (batctl): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Tonton
2019-10-18gnu: Add FontManager....* gnu/packages/fontutils.scm (fontmanager): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Boris A. Dekshteyn
2019-10-18pull: Call 'ensure-default-profile' after 'set-build-options'....This is a followup to 81c580c8664bfeeb767e2c47ea343004e88223c7. * guix/scripts/pull.scm (guix-pull): Move 'ensure-default-profile' call after 'set-build-options-from-command-line' call. This ensures that the 'profiles/per-user/$USER' directory is created before 'ensure-default-profile' is called when 'GUIX_DAEMON_SOCKET' points to a remote TCP daemon. Ludovic Courtès
2019-10-18gnu: Add ecl-dexador....* gnu/packages/lisp.scm (ecl-dexador): New variable. Guillaume Le Vaillant
2019-10-18gnu: Add ecl-trivial-mimes....* gnu/packages/lisp.scm (ecl-trivial-mimes): New variable. Guillaume Le Vaillant
2019-10-18gnu: sbcl-trivial-mimes: Fix 'fix-paths' phase....* gnu/packages/lisp.scm (sbcl-trivial-mimes)[arguments]: Use '(%lisp-type)' instead of hard coded 'sbcl' in 'fix-paths' phase. Guillaume Le Vaillant
2019-10-18build-system/asdf: Fix package transform....* guix/build-system/asdf.scm (package-with-build-system): [find-input-package]: New function. [rewrite]: Use it. Guillaume Le Vaillant
2019-10-18gnu: Add arrows....* gnu/packages/lisp.scm (cl-arrows, sbcl-arrows, ecl-arrows): New variables. Guillaume Le Vaillant
2019-10-18gnu: cl+ssl: Update to 0.0.0-1.141ae91....* gnu/packages/lisp.scm (sbcl-cl+ssl): Update to 0.0.0-1.141ae91. [inputs]: Add alexandria and trivial-features. Guillaume Le Vaillant
2019-10-18Fix documentation of delete_after in the getmail service....* doc/guix.texi (Getmail service): Remove the word `not'. * gnu/services/getmail.scm (getmail-options-configuration): Ditto. Florian Pelz
2019-10-18gnu: emacs-helm-sly: Fix hash....* gnu/packages/emacs-xyz.scm (emacs-helm-sly): Fix hash. Brian Leung
2019-10-18gnu: Add emacs-minibuffer-line....* gnu/packages/emacs-xyz.scm (emacs-minibuffer-line): New variable. Joseph LaFreniere
2019-10-18gnu: sunxi-tools: Adapt to cross-compiler toolchain changes....* gnu/packages/admin.scm (sunxi-tools)[arguments]<#:phases>[set-environment-up]: Adapt to cross-compiler toolchain changes. Danny Milosavljevic
2019-10-17gnu: neovim: Remove unneeded reference....gnu/packages/vim.scm (neovim)[arguments]: Add a phase to remove a reference to the compiler. Julien Lepiller
2019-10-17gnu: Exim: Update to 4.92.3 [fixes CVE-2019-16928]....* gnu/packages/mail.scm (exim): Update to 4.92.3. Leo Famulari
2019-10-17doc: Remove 'maintainers' field from package documentation....The field itself was removed in 154f1f0937754fafac0c6288dd458b66b332e6bb. * doc/guix.texi (package Reference): Remove 'maintainers' field. Christopher Baines
2019-10-17gnu: Add minisign....* gnu/packages/crypto.scm (minisign): New public variable. Signed-off-by: Mathieu Othacehe <m.othacehe@gmail.com> Tanguy Le Carrour
2019-10-17gnu: ucx: Build verbosely....* gnu/packages/fabric-management.scm (ucx)[arguments]: Add #:make-flags. Ludovic Courtès
2019-10-17gnu: ucx: Disable optimizations specific to the build machine....* gnu/packages/fabric-management.scm (ucx)[arguments]: Replace "--enable-optimizations" with "--disable-optimizations". Ludovic Courtès
2019-10-17gnu: Add emacs-helm-sly....* gnu/packages/emacs-xyz.scm (emacs-helm-sly): New variable. Pierre Neidhardt
2019-10-17gnu: emacs-evil-collection: Update to 20191017....* gnu/packages/emacs-xyz.scm (emacs-evil-collection): Update to 20191017. Pierre Neidhardt
2019-10-17gnu: emacs-sly: Update to 20191016....* gnu/packages/emacs-xyz.scm (emacs-sly): Update to 20191016. Pierre Neidhardt
2019-10-17gnu: emacs-nhexl-mode: Update to 1.4....* gnu/packages/emacs-xyz.scm (emacs-nhexl-mode): Update to 1.4. Tobias Geerinckx-Rice
2019-10-17gnu: r-covr: Update to 3.3.2....* gnu/packages/cran.scm (r-covr): Update to 3.3.2. Tobias Geerinckx-Rice
2019-10-17gnu: linux-libre@5.3: Update to 5.3.6....* gnu/packages/linux.scm (deblob-scripts-5.3) (linux-libre-5.3-version, linux-libre-5.3-pristine-sources): Update to 5.3.6. Tobias Geerinckx-Rice
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