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2023-03-15gnu: r-mutationalpatterns: Update to 3.8.1....* gnu/packages/bioconductor.scm (r-mutationalpatterns): Update to 3.8.1. Ricardo Wurmus
2023-03-15gnu: r-muscat: Update to 1.12.1....* gnu/packages/bioconductor.scm (r-muscat): Update to 1.12.1. Ricardo Wurmus
2023-03-15gnu: r-limma: Update to 3.54.2....* gnu/packages/bioconductor.scm (r-limma): Update to 3.54.2. Ricardo Wurmus
2023-03-15gnu: r-lfa: Update to 1.28.2....* gnu/packages/bioconductor.scm (r-lfa): Update to 1.28.2. Ricardo Wurmus
2023-03-15gnu: r-genomicalignments: Update to 1.34.1....* gnu/packages/bioconductor.scm (r-genomicalignments): Update to 1.34.1. Ricardo Wurmus
2023-03-15gnu: r-annotationdbi: Update to 1.60.2....* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.60.2. Ricardo Wurmus
2023-03-15gnu: r-infercnv: Update to 1.14.2....* gnu/packages/bioconductor.scm (r-infercnv): Update to 1.14.2. Ricardo Wurmus
2023-03-15gnu: r-bandits: Update to 1.14.2....* gnu/packages/bioconductor.scm (r-bandits): Update to 1.14.2. Ricardo Wurmus
2023-03-15gnu: r-bambu: Update to 3.0.8....* gnu/packages/bioconductor.scm (r-bambu): Update to 3.0.8. Ricardo Wurmus
2023-03-15gnu: r-atena: Update to 1.4.1....* gnu/packages/bioconductor.scm (r-atena): Update to 1.4.1. [propagated-inputs]: Add r-matrixstats. Ricardo Wurmus
2023-03-15gnu: r-alpsnmr: Update to 4.0.4....* gnu/packages/bioconductor.scm (r-alpsnmr): Update to 4.0.4. [propagated-inputs]: Add r-cli. Ricardo Wurmus
2023-03-15gnu: r-biocpkgtools: Update to 1.16.1....* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.16.1. [source]: Add snippet to remove bundled minified JavaScript files. [native-inputs]: Add esbuild, js-bootstrap, js-d3, js-jquery, and js-underscore. [arguments]: Add build phase 'process-javascript. Ricardo Wurmus
2023-03-15gnu: r-mast: Update to 1.24.1....* gnu/packages/bioconductor.scm (r-mast): Update to 1.24.1. [source]: Delete minified JavaScript. [arguments]: Add build phase 'process-javascript. [native-inputs]: Add esbuild and js-jquery-sticky-kit. Ricardo Wurmus
2023-03-15gnu: sbcl-nclasses: Update to 0.3.0....* gnu/packages/lisp-xyz.scm (sbcl-nclasses): Update to 0.3.0. Pierre Neidhardt
2023-03-15gnu: Add sbcl-stumpwm-hostname....* gnu/packages/wm.scm (sbcl-stumpwm-hostname): New variable. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> jgart
2023-03-15gnu: sbcl-mcclim: Update project urls....* gnu/packages/lisp-xyz.scm (sbcl-mcclim)[source]: Update source url. [home-page]: Update project home page. Signed-off-by: Andreas Enge <andreas@enge.fr> jgart
2023-03-15gnu: reprotest: Update to 0.7.23....* gnu/packages/diffoscope.scm (reprotest): Update to 0.7.23. [phases] Update adjust-locales. Vagrant Cascadian
2023-03-15gnu: diffoscope: Update to 238....* gnu/packages/diffoscope.scm (diffoscope): Update to 238. [native-inputs]: Switch from poppler to poppler-next. Vagrant Cascadian
2023-03-15gnu: emacs-org-modern: Update to 0.9....* gnu/packages/emacs-xyz.scm (emacs-org-modern): Update to 0.9. Andrew Tropin
2023-03-14gnu: r-rhandsontable: Move to (gnu packages cran)....* gnu/packages/bioinformatics.scm (r-rhandsontable): Move this variable from here... * gnu/packages/cran.scm (r-rhandsontable): ...to here. Ricardo Wurmus
2023-03-14gnu: Add r-premessa....* gnu/packages/bioinformatics.scm (r-premessa): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>. Navid Afkhami
2023-03-14gnu: icecat: Update to 102.9.0-guix0-preview1 [security fixes]....Includes fixes for CVE-2023-25751, CVE-2023-25752, CVE-2023-28162, CVE-2023-28163, CVE-2023-28164, and CVE-2023-28176. * gnu/packages/gnuzilla.scm (%icecat-base-version, %icecat-build-id): Update. (icecat-source): Update gnuzilla commit, base version, and hashes. Mark H Weaver
2023-03-14gnu: Add r-rhandsontable....* gnu/packages/bioinformatics.scm (r-rhandsontable): New variable. Co-authored-by: Navid Afkhami <navid.afkhami@mdc-berlin.de> Ricardo Wurmus
2023-03-14gnu: r-tidyverse: Update to 2.0.0....* gnu/packages/cran.scm (r-tidyverse): Update to 2.0.0. [propagated-inputs]: Remove r-crayon; add r-conflicted and r-ragg. Navid Afkhami
2023-03-14gnu: pcb-rnd: Update to 3.1.0....* gnu/packages/engineering.scm (pcb-rnd): Update to 3.1.0. [inputs]: Add librnd. [arguments]: Use gexp; set LIBRND_PREFIX. Ricardo Wurmus
2023-03-14gnu: Add librnd....* gnu/packages/engineering.scm (librnd): New variable. Ricardo Wurmus
2023-03-14gnu: pcb: Remove eudev....* gnu/packages/engineering.scm (pcb)[inputs]: Remove eudev as it is no longer necessary to add it for mesa. Ricardo Wurmus
2023-03-14gnu: pcb: Drop input labels....* gnu/packages/engineering.scm (pcb)[inputs, native-inputs]: Remove package labels. Ricardo Wurmus
2023-03-14gnu: pcb: Update to 4.3.0....* gnu/packages/engineering.scm (pcb): Update to 4.3.0. [arguments]: Remove obsolete build phases. Ricardo Wurmus
2023-03-14gnu: pcb: Use gexp....* gnu/packages/engineering.scm (pcb)[arguments]: Use gexp and drop trailing #T from build phases. Ricardo Wurmus
2023-03-14gnu: lepton-eda: Adjust format....* gnu/packages/engineering.scm (lepton-eda): Move arguments above inputs, and reformat source field. Ricardo Wurmus
2023-03-14gnu: lepton-eda: Use gexp for arguments....* gnu/packages/engineering.scm (lepton-eda)[arguments]: Use gexp. Ricardo Wurmus
2023-03-14gnu: lepton-eda: Drop input labels....* gnu/packages/engineering.scm (lepton-eda)[native-inputs, inputs]: Do not use redundant package labels. Ricardo Wurmus
2023-03-14gnu: guix-build-coordinator: Update to 0-73.7c1eedf....* gnu/packages/package-management.scm (guix-build-coordinator): Update to 0-73.7c1eedf. Christopher Baines
2023-03-14gnu: mruby: Update to 3.2.0....* gnu/packages/ruby.scm (mruby): Update to 3.2.0. [arguments]: Remove unnecessary substitutions in the 'disable-broken-tests phase. [description]: Update. Signed-off-by: Christopher Baines <mail@cbaines.net> Yovan Naumovski
2023-03-14gnu: autokey: Update to 0.96.0....* gnu/packages/python-xyz.scm (autokey): Update to 0.96.0. [source]: Patch tests. [arguments]: Enable tests. Prefer PATH over substitute* in phase 'fix-paths. Add phase 'setup-env-vars. Rename 'wrap-autokey-gi to 'wrap-autokey and set PATH. [build-system]: Switch to pyproject-build-system. [native-inputs]: Add python-pytest, python-pytest-cov and python-pyhamcrest. Signed-off-by: Christopher Baines <mail@cbaines.net> Bruno Victal
2023-03-14gnu: tesseract-ocr: Update to 5.3.0....* gnu/packages/ocr.scm (tesseract-ocr): Update to 5.3.0. Signed-off-by: Christopher Baines <mail@cbaines.net> kiasoc5
2023-03-14gnu: gimagereader: Update to 3.4.1....* gnu/packages/ocr.scm (gimagereader): Update to 3.4.1. [inputs]: Remove quazip-0; add quazip. Signed-off-by: Christopher Baines <mail@cbaines.net> kiasoc5
2023-03-14gnu: phantomsocks: Update to 0.0.0-20230223180716-34d21f24a9eb....* gnu/packages/networking.scm (phantomsocks): Update to 0.0.0-20230223180716-34d21f24a9eb. Signed-off-by: Christopher Baines <mail@cbaines.net> Hilton Chain
2023-03-14gnu: rng-tools: Update to 6.16....* gnu/packages/linux.scm (rng-tools): Update to 6.16. [arguments]: Disable qrypt. [inputs]: Add libcap. Signed-off-by: Christopher Baines <mail@cbaines.net> Bruno Victal
2023-03-14gnu: rng-tools: Do not build randstat binary....This trivial binary is rarely useful. * gnu/local.mk (dist_patch_DATA): Register patch. * gnu/packages/patches/rng-tools-revert-build-randstat.patch: New file. * gnu/packages/linux.scm (rng-tools)[origin]: Add patch. Signed-off-by: Christopher Baines <mail@cbaines.net> Bruno Victal
2023-03-14gnu: rng-tools: Rewrite using gexps....* gnu/packages/linux.scm (rng-tools)[arguments]: Rewrite using gexps. Signed-off-by: Christopher Baines <mail@cbaines.net> Bruno Victal
2023-03-14gnu: splash: Update to 3.7.2....* gnu/packages/astronomy.scm (splash): Update to 3.7.2. Signed-off-by: Christopher Baines <mail@cbaines.net> Sharlatan Hellseher
2023-03-14gnu: clipmenu: Improve package style....* gnu/packages/xdisorg.scm (clipmenu)[arguments]: Use g-expressions; remove trailing #t from phases. EuAndreh via Guix-patches via
2023-03-14gnu: clipmenu: Update to 6.2.0....* gnu/packages/xdisorg.scm (clipmenu): Update to 6.2.0. [arguments]: Install two additional commands. EuAndreh via Guix-patches via
2023-03-14teams: Add 宋文武 to xfce and lxqt teams....* etc/teams.scm.in ("宋文武"): Add xfce and lxqt. 宋文武
2023-03-14teams: Add Xfce and LXQt teams....* etc/teams.scm.in (xfce, lxqt): New teams. 宋文武
2023-03-13gnu: go-golang-zx2c4-com-wireguard: Update to 0.0.20211016....Newer releases of this package are available but require newer versions of Golang, especially around networking. * gnu/packages/golang.scm (go-golang-zx2c4-com-wireguard): Update to 0.0.20211016. Signed-off-by: Christopher Baines <mail@cbaines.net> Felix Lechner
2023-03-13gnu: python-graph-tool: Update to 2.46....* gnu/packages/graph.scm (python-graph-tool): Update to 2.46. Signed-off-by: Christopher Baines <mail@cbaines.net> Ale Abdo
2023-03-13gnu: python-bibtexparser: Update to 1.4.0....* gnu/packages/python-xyz.scm (python-bibtexparser): Update to 1.4.0. Signed-off-by: Christopher Baines <mail@cbaines.net> Amade Nemes
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