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2019-12-18gnu: Remove uses of deprecated Qemu network configuration.•••* gnu/build/vm.scm (load-in-linux-vm): Move Qemu network configuration from ARCH-SPECIFIC-FLAGS to the Qemu command line. Use the "-nic" option of Qemu instead of "-device" and "-net". * gnu/system/vm.scm (common-qemu-options): Do not add a '-net' command. (virtual-machine-compiler): Use "-nic user,..." instead of "-net". * doc/guix.texi (Installing Guix in a VM, Invoking guix system, Running Guix in a VM): Do the same for examples. Marius Bakke
2019-12-18gnu: linux-libre: Update to 5.3.18.•••* gnu/packages/linux.scm (linux-libre-5.3-version): Update to 5.3.18. (linux-libre-5.3-pristine-source): Update hash. Mark H Weaver
2019-12-18gnu: linux-libre: Update deblob scripts.•••* gnu/packages/linux.scm (deblob-scripts-4.19): Update to 4.19.90. (deblob-scripts-4.14): Update to 4.14.159. (deblob-scripts-5.3, deblob-scripts-4.9, deblob-scripts-4.4): Update version numbers to 5.3.17, 4.9.206, and 4.4.206, respectively, although the scripts themselves have not changed. Mark H Weaver
2019-12-18gnu: Add r-biodist.•••* gnu/packages/bioconductor.scm (r-biodist): New variable. Ricardo Wurmus
2019-12-18gnu: Add r-biocworkflowtools.•••* gnu/packages/bioconductor.scm (r-biocworkflowtools): New variable. Ricardo Wurmus
2019-12-18gnu: Add r-biocset.•••* gnu/packages/bioconductor.scm (r-biocset): New variable. Ricardo Wurmus
2019-12-18gnu: Add r-biocpkgtools.•••* gnu/packages/bioconductor.scm (r-biocpkgtools): New variable. Ricardo Wurmus
2019-12-18gnu: Add r-biocor.•••* gnu/packages/bioconductor.scm (r-biocor): New variable. Ricardo Wurmus
2019-12-18gnu: Add r-bioconcotk.•••* gnu/packages/bioconductor.scm (r-bioconcotk): New variable. Ricardo Wurmus
2019-12-18gnu: Add r-multiassayexperiment.•••* gnu/packages/bioconductor.scm (r-multiassayexperiment): New variable. Ricardo Wurmus
2019-12-18gnu: Add r-experimenthub.•••* gnu/packages/bioconductor.scm (r-experimenthub): New variable. Ricardo Wurmus
2019-12-18gnu: Add r-biocgraph.•••* gnu/packages/bioconductor.scm (r-biocgraph): New variable. Ricardo Wurmus
2019-12-18gnu: Add r-bioccasestudies.•••* gnu/packages/bioconductor.scm (r-bioccasestudies): New variable. Ricardo Wurmus
2019-12-18gnu: Add r-ebarrays.•••* gnu/packages/bioconductor.scm (r-ebarrays): New variable. Ricardo Wurmus
2019-12-18gnu: Add r-reactomepa.•••* gnu/packages/bioconductor.scm (r-reactomepa): New variable. Ricardo Wurmus
2019-12-18gnu: Add r-graphite.•••* gnu/packages/bioconductor.scm (r-graphite): New variable. Ricardo Wurmus
2019-12-18gnu: Add r-influencer.•••* gnu/packages/cran.scm (r-influencer): New variable. Ricardo Wurmus
2019-12-18gnu: Add r-curatedtcgadata.•••* gnu/packages/bioconductor.scm (r-curatedtcgadata): New variable. Ricardo Wurmus
2019-12-18gnu: Add r-reactome-db.•••* gnu/packages/bioconductor.scm (r-reactome-db): New variable. Ricardo Wurmus
2019-12-18gnu: libmicrohttpd: Update to 0.9.69.•••* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.69. Efraim Flashner
2019-12-18gnu: cmst: Update to 2019.01.13.•••* gnu/packages/connman.scm (cmst): Update to 2019.01.13. Efraim Flashner
2019-12-18gnu: python-ecdsa: Actually run the test suite.•••* gnu/packages/python-crypto.scm (python-ecdsa)[arguments]: Replace 'check phase. [native-inputs]: Add python-pytest. Efraim Flashner
2019-12-18gnu: python-ecdsa: Update to 0.14.1.•••* gnu/packages/python-crypto.scm (python-ecdsa): Update to 0.14.1. [inputs]: Move openssl ... [native-inputs]: ... to here. [propagated-inputs]: Add python-six. Efraim Flashner
2019-12-17swh: Fix API call for getting origin.•••When using the archival linter, git origins already in the archive where not recognized due to an API change and where repeatedly asked for archival. This is fixed here. * guix/swh.scm (lookup-origin): Fix API URI for getting origin. (<origin>): Fix comment with API URI example. Björn Höfling
2019-12-17gnu: linux-libre: Update to 5.3.17.•••* gnu/packages/linux.scm (linux-libre-5.3-version): Update to 5.3.17. (linux-libre-5.3-pristine-source): Update hash. Mark H Weaver
2019-12-17gnu: linux-libre@4.19: Update to 4.19.90.•••* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.90. (linux-libre-4.19-pristine-source): Update hash. Mark H Weaver
2019-12-17gnu: linux-libre@4.14: Update to 4.14.159.•••* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.159. (linux-libre-4.14-pristine-source): Update hash. Mark H Weaver
2019-12-17gnu: Add r-biobroom.•••* gnu/packages/bioconductor.scm (r-biobroom): New variable. Ricardo Wurmus
2019-12-17gnu: Add r-bioassayr.•••* gnu/packages/bioconductor.scm (r-bioassayr): New variable. Ricardo Wurmus
2019-12-17gnu: Add r-chemminer.•••* gnu/packages/bioconductor.scm (r-chemminer): New variable. Ricardo Wurmus
2019-12-17gnu: Add r-bigpint.•••* gnu/packages/bioconductor.scm (r-bigpint): New variable. Ricardo Wurmus
2019-12-17gnu: Add r-bigmemoryextras.•••* gnu/packages/bioconductor.scm (r-bigmemoryextras): New variable. Ricardo Wurmus
2019-12-17gnu: Add r-biggr.•••* gnu/packages/bioconductor.scm (r-biggr): New variable. Ricardo Wurmus
2019-12-17gnu: Add r-hyperdraw.•••* gnu/packages/bioconductor.scm (r-hyperdraw): New variable. Ricardo Wurmus
2019-12-17gnu: Add r-hypergraph.•••* gnu/packages/bioconductor.scm (r-hypergraph): New variable. Ricardo Wurmus
2019-12-17gnu: Add r-rsbml.•••* gnu/packages/bioconductor.scm (r-rsbml): New variable. Ricardo Wurmus
2019-12-17gnu: Add r-bifet.•••* gnu/packages/bioconductor.scm (r-bifet): New variable. Ricardo Wurmus
2019-12-17gnu: Add r-bicare.•••* gnu/packages/bioconductor.scm (r-bicare): New variable. Ricardo Wurmus
2019-12-17gnu: Add r-bhc.•••* gnu/packages/bioconductor.scm (r-bhc): New variable. Ricardo Wurmus
2019-12-17gnu: Add r-bgx.•••* gnu/packages/bioconductor.scm (r-bgx): New variable. Ricardo Wurmus
2019-12-17gnu: Add r-bgmix.•••* gnu/packages/bioconductor.scm (r-bgmix): New variable. Ricardo Wurmus
2019-12-17gnu: Add r-rsvg.•••* gnu/packages/cran.scm (r-rsvg): New variable. Ricardo Wurmus
2019-12-17gnu: Add r-shinycssloaders.•••* gnu/packages/cran.scm (r-shinycssloaders): New variable. Ricardo Wurmus
2019-12-17gnu: Add r-lim.•••* gnu/packages/cran.scm (r-lim): New variable. Ricardo Wurmus
2019-12-17gnu: Add r-diagram.•••* gnu/packages/cran.scm (r-diagram): New variable. Ricardo Wurmus
2019-12-17gnu: Add r-poibin.•••* gnu/packages/cran.scm (r-poibin): New variable. Ricardo Wurmus
2019-12-17gnu: Add libsbml.•••* gnu/packages/bioinformatics.scm (libsbml): New variable. Ricardo Wurmus
2019-12-17gnu: Add love-nuklear.•••* gnu/packages/game-development.scm (love-nuklear): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Jethro Cao
2019-12-17gnu: txr: Update to 229.•••* gnu/packages/lisp.scm (txr): Update to 229. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Guillaume Le Vaillant
2019-12-17gnu: gfortran: change to a hidden package•••* gnu/packages/gcc.scm (gfortran-4.8, gfortran-4.9) (gfortran-5, gfortran-6, gfortran-7, gfortran-8) (gfortran-9): Wrap in 'hidden-package'. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Konrad Hinsen
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