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2022-11-24gnu: emacs-projectile: Activate tests....* gnu/packages/emacs-xyz.scm (emacs-projectile)[source]: Use Git repository instead of released tarball to get the test file. [arguments]: Activate tests, and fix a failing one. Nicolas Goaziou
2022-11-24gnu: emacs-projectile: Improve description....* gnu/packages/emacs-xyz.scm (emacs-projectile)[description]: Use proper capitalization, expand some words, add Texinfo markup, remove fancy typography. Nicolas Goaziou
2022-11-24gnu: emacs-projectile: Update to 2.7.0....* gnu/packages/emacs-xyz.scm (emacs-projectile): Update to 2.7.0. Nicolas Goaziou
2022-11-24gnu: emacs-kind-icon: Update to 0.1.8....* gnu/packages/emacs-xyz.scm (emacs-kind-icon): Update to 0.1.8. Nicolas Goaziou
2022-11-24gnu: emacs-vertico: Update to 0.29....* gnu/packages/emacs-xyz.scm (emacs-vertico): Update to 0.29. Nicolas Goaziou
2022-11-24gnu: emacs-eldev: Update to 1.3....* gnu/packages/emacs-xyz.scm (emacs-eldev): Update to 1.3. Nicolas Goaziou
2022-11-24gnu: emacs-detached: Update to 0.10.0....* gnu/packages/emacs-xyz.scm (emacs-detached): Update to 0.10.0. Nicolas Goaziou
2022-11-24gnu: emacs-org-modern: Update to 0.6....* gnu/packages/emacs-xyz.scm (emacs-org-modern): Update to 0.6. Nicolas Goaziou
2022-11-24gnu: r-ancombc: Update to 2.0.1....* gnu/packages/bioconductor.scm (r-ancombc): Update to 2.0.1. [propagated-inputs]: Remove r-microbiome, r-nlme, and r-phyloseq; add r-cvxr, r-emmeans, r-lme4, r-lmertest, r-mia, r-rngtools, r-s4vectors, r-singlecellexperiment, r-summarizedexperiment, and r-treesummarizedexperiment. Ricardo Wurmus
2022-11-24gnu: Add r-mia....* gnu/packages/bioconductor.scm (r-mia): New variable. Ricardo Wurmus
2022-11-24gnu: Add r-treesummarizedexperiment....* gnu/packages/bioconductor.scm (r-treesummarizedexperiment): New variable. Ricardo Wurmus
2022-11-24gnu: Add r-cvxr....* gnu/packages/cran.scm (r-cvxr): New variable. Ricardo Wurmus
2022-11-24gnu: Add r-ecosolver....* gnu/packages/cran.scm (r-ecosolver): New variable. Ricardo Wurmus
2022-11-24gnu: Add r-scs....* gnu/packages/cran.scm (r-scs): New variable. Ricardo Wurmus
2022-11-24gnu: Add r-osqp....* gnu/packages/cran.scm (r-osqp): New variable. Ricardo Wurmus
2022-11-24gnu: Add r-ancombc....* gnu/packages/bioconductor.scm (r-ancombc): New variable. Mădălin Ionel Patrașcu
2022-11-24gnu: linux-libre 4.19: Update to 4.19.266....* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.266. (linux-libre-4.19-pristine-source): Update hash. Leo Famulari
2022-11-24gnu: r-aims: Update to 1.30.0....* gnu/packages/bioconductor.scm (r-aims): Update to 1.30.0. Ricardo Wurmus
2022-11-24gnu: Add r-aims....* gnu/packages/bioconductor.scm (r-aims): New variable. Mădălin Ionel Patrașcu
2022-11-24gnu: r-alevinqc: Update to 1.14.0....* gnu/packages/bioconductor.scm (r-alevinqc): Update to 1.14.0. Ricardo Wurmus
2022-11-24gnu: Add r-alevinqc....* gnu/packages/bioconductor.scm (r-alevinqc): New variable. Mădălin Ionel Patrașcu
2022-11-24gnu: r-alphabeta: Update to 1.12.0....* gnu/packages/bioconductor.scm (r-alphabeta): Update to 1.12.0. Ricardo Wurmus
2022-11-24gnu: Add r-alphabeta....* gnu/packages/bioconductor.scm (r-alphabeta): New variable. Mădălin Ionel Patrașcu
2022-11-24gnu: r-asafe: Update to 1.24.0....* gnu/packages/bioconductor.scm (r-asafe): Update to 1.24.0. Ricardo Wurmus
2022-11-24gnu: Add r-asafe....* gnu/packages/bioconductor.scm (r-asafe): New variable. Mădălin Ionel Patrașcu
2022-11-24gnu: r-arrayexpress: Update to 1.57.0....* gnu/packages/bioconductor.scm (r-arrayexpress): Update to 1.57.0. Ricardo Wurmus
2022-11-24gnu: Add r-arrayexpress....* gnu/packages/bioconductor.scm (r-arrayexpress): New variable. Mădălin Ionel Patrașcu
2022-11-24gnu: r-scuttle: Update to 1.8.1....* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.8.1. Ricardo Wurmus
2022-11-24gnu: r-rgreat: Update to 2.0.2....* gnu/packages/bioconductor.scm (r-rgreat): Update to 2.0.2. Ricardo Wurmus
2022-11-24gnu: r-bioccheck: Update to 1.34.2....* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.34.2. Ricardo Wurmus
2022-11-24gnu: r-dose: Update to 3.24.2....* gnu/packages/bioconductor.scm (r-dose): Update to 3.24.2. Ricardo Wurmus
2022-11-24gnu: r-shortread: Update to 1.56.1....* gnu/packages/bioconductor.scm (r-shortread): Update to 1.56.1. Ricardo Wurmus
2022-11-24gnu: r-chipseeker: Update to 1.34.1....* gnu/packages/bioconductor.scm (r-chipseeker): Update to 1.34.1. Ricardo Wurmus
2022-11-24gnu: r-deconvr: Update to 1.4.2....* gnu/packages/bioconductor.scm (r-deconvr): Update to 1.4.2. Ricardo Wurmus
2022-11-24gnu: r-bambu: Update to 3.0.2....* gnu/packages/bioconductor.scm (r-bambu): Update to 3.0.2. Ricardo Wurmus
2022-11-24gnu: r-minimal: Simplify build phase....* gnu/packages/statistics.scm (r-minimal)[arguments]: Simplify phase "remove-extraneous-references". Ricardo Wurmus
2022-11-24gnu: r-minimal: Use %store-directory instead of /gnu/store....* gnu/packages/statistics.scm (r-minimal)[arguments]: Use %store-directory instead of hard-coding "/gnu/store" prefix. Ricardo Wurmus
2022-11-24gnu: r-with-tests: Update to 4.2.2....* gnu/packages/statistics.scm (r-with-tests): Update to 4.2.2. [arguments]: Patch DESCRIPTION file of "tools" package to avoid non-deterministic line break. Ricardo Wurmus
2022-11-24gnu: r-with-tests: Drop labels from input lists....* gnu/packages/statistics.scm (r-with-tests)[native-inputs]: Drop input labels. [inputs]: Same. (r-minimal)[arguments]: Remove lookup of "texlive" package. Ricardo Wurmus
2022-11-24gnu: r-ggtern: Update to 3.4.0....* gnu/packages/cran.scm (r-ggtern): Update to 3.4.0. Ricardo Wurmus
2022-11-24gnu: r-phyloseq: Update to 1.42.0....* gnu/packages/bioconductor.scm (r-phyloseq): Update to 1.42.0. zimoun
2022-11-24gnu: r-tximeta: Update to 1.16.0....* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.16.0. zimoun
2022-11-24gnu: r-tricycle: Update to 1.6.0....* gnu/packages/bioconductor.scm (r-tricycle): Update to 1.6.0. zimoun
2022-11-24gnu: r-tcgabiolinks: Update to 2.25.3....* gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.25.3. zimoun
2022-11-24gnu: r-biscuiteer: Update to 1.12.0....* gnu/packages/bioconductor.scm (r-biscuiteer): Update to 1.12.0. zimoun
2022-11-24gnu: r-omnipathr: Update to 3.5.25....* gnu/packages/bioconductor.scm (r-omnipathr): Update to 3.5.25. [propagated-inputs]: Add r-rmarkdown and r-rvest. zimoun
2022-11-24gnu: r-omicade4: Update to 1.38.0....* gnu/packages/bioconductor.scm (r-omicade4): Update to 1.38.0. zimoun
2022-11-24gnu: r-dmrseq: Update to 1.18.0....* gnu/packages/bioconductor.scm (r-dmrseq): Update to 1.18.0. zimoun
2022-11-24gnu: r-dada2: Update to 1.26.0....* gnu/packages/bioconductor.scm (r-dada2): Update to 1.26.0. zimoun
2022-11-24gnu: r-bsseq: Update to 1.34.0....* gnu/packages/bioconductor.scm (r-bsseq): Update to 1.34.0. zimoun