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2021-05-04gnu: gthumb: Update to 3.10.3.Tobias Geerinckx-Rice
* gnu/packages/gnome.scm (gthumb): Update to 3.10.3.
2021-05-04gnu: libhandy: Update to 1.2.2.Tobias Geerinckx-Rice
* gnu/packages/gnome.scm (libhandy): Update to 1.2.2.
2021-05-04gnu: busybox: Update to 1.33.1.Tobias Geerinckx-Rice
* gnu/packages/busybox.scm (busybox): Update to 1.33.1. [source]: Remove upstreamed patch. * gnu/packages/patches/busybox-CVE-2021-28831.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2021-05-04gnu: indi: Stop returning #t from phases.Tobias Geerinckx-Rice
* gnu/packages/astronomy.scm (indi)[arguments]: Remove #t phase return values.
2021-05-04gnu: indi: Respect #:tests?.Tobias Geerinckx-Rice
* gnu/packages/astronomy.scm (indi)[arguments]: Respect #:tests? in the 'check phase.
2021-05-04gnu: indi: Check slightly more functionally.Tobias Geerinckx-Rice
* gnu/packages/astronomy.scm (indi)[arguments]: Substitute WITH-DIRECTORY-EXCURSION for double CHDIR.
2021-05-04gnu: indi: Update to 1.9.0.Tobias Geerinckx-Rice
* gnu/packages/astronomy.scm (indi): Update to 1.9.0.
2021-05-04gnu: bcachefs-tools: Prepare for cross-compilation.Tobias Geerinckx-Rice
* gnu/packages/file-systems.scm (bcachefs-tools)[arguments]: Use CC-FOR-TARGET and PKG-CONFIG-FOR-TARGET.
2021-05-04gnu: bcachefs-tools: Update to 0.1-6.a14d39d.Tobias Geerinckx-Rice
* gnu/packages/file-systems.scm (bcachefs-tools): Update to 0.1-6.a14d39d.
2021-05-04file-systems: Rewrite comment.Tobias Geerinckx-Rice
* gnu/build/file-systems.scm (read-bcachefs-superblock): Make comment less damned negative.
2021-05-04file-systems: Handle abnormal ‘bcachefs fsck’ exits.Tobias Geerinckx-Rice
* gnu/build/file-systems.scm (check-bcachefs-file-system): Handle a STATUS:EXIT-VAL of #F.
2021-05-04gnu: bitcoin-core@0.21: Update to 0.21.1.Tobias Geerinckx-Rice
* gnu/packages/finance.scm (bitcoin-core-0.21): Update to 0.21.1.
2021-05-04gnu: Add r-guitar.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-guitar): New variable.
2021-05-04gnu: python-nbconvert: Simplify build phase.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-nbconvert)[arguments]: Simplify build phase "fix-paths-and-tests" by using WHICH; remove final boolean and reindent.
2021-05-04gnu: python-nbconvert: Use modular texlive packages.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-nbconvert)[inputs]: Remove texlive. [native-inputs]: Add texlive-union.
2021-05-04gnu: Add texlive-eurosym.Ricardo Wurmus
* gnu/packages/tex.scm (texlive-eurosym): New variable.
2021-05-04gnu: Add texlive-tcolorbox.Ricardo Wurmus
* gnu/packages/tex.scm (texlive-tcolorbox): New variable.
2021-05-04gnu: Add texlive-adjustbox.Ricardo Wurmus
* gnu/packages/tex.scm (texlive-adjustbox): New variable.
2021-05-04gnu: Add texlive-collectbox.Ricardo Wurmus
* gnu/packages/tex.scm (texlive-collectbox): New variable.
2021-05-04gnu: Add texlive-storebox.Ricardo Wurmus
* gnu/packages/tex.scm (texlive-storebox): New variable.
2021-05-04gnu: Add texlive-ifoddpage.Ricardo Wurmus
* gnu/packages/tex.scm (texlive-ifoddpage): New variable.
2021-05-04gnu: Add texlive-titling.Ricardo Wurmus
* gnu/packages/tex.scm (texlive-titling): New variable.
2021-05-04gnu: sbcl-trivial-backtrace: Move lift to native-inputs.Guillaume Le Vaillant
* gnu/packages/lisp-xyz.scm (sbcl-trivial-backtrace)[inputs]: Move lift to... [native-inputs]: ... here.
2021-05-04gnu: sbcl-trivial-backtrace: Update to 1.1.0-1.6eb65bdSharlatan Hellseher
* gnu/packages/lisp-xyz.scm (sbcl-trivial-backtrace): Update to 1.1.0-1.6eb65bd. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-05-04gnu: sbcl-static-dispatch: Update to 0.5.Sharlatan Hellseher
* gnu/packages/lisp-xyz.scm (sbcl-static-dispatch): Update to 0.5. [version]: Use annotated tag of the latest release in upstream. [native-inputs]: Remove prove, add fiveam. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-05-04gnu: sbcl-cl-environments: Update to 0.4.Sharlatan Hellseher
* gnu/package/lisp-xyz.scm (sbcl-cl-environments): Update to 0.4. [version]: Use annotated tag instead of direct commit, there are upstream releases available now. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-05-04etc: Break long lines in commit messages.Ricardo Wurmus
* etc/committer.scm.in (break-string): New procedure. (change-commit-message): Use it.
2021-05-04gnu: r-summarizedexperiment: Move to (gnu packages bioconductor).Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Move variable from here... * gnu/packages/bioconductor.scm (r-summarizedexperiment): ...to here.
2021-05-04gnu: r-mixomics: Update to 6.14.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.14.1. [propagated-inputs]: Add r-biocparallel.
2021-05-04gnu: r-catalyst: Update to 1.14.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-catalyst): Update to 1.14.1.
2021-05-04gnu: r-scran: Update to 1.18.7.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-scran): Update to 1.18.7.
2021-05-04gnu: r-biocpkgtools: Update to 1.8.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.8.2.
2021-05-04gnu: r-experimenthub: Update to 1.16.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-experimenthub): Update to 1.16.1.
2021-05-04gnu: r-bioassayr: Update to 1.28.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bioassayr): Update to 1.28.3.
2021-05-04gnu: r-universalmotif: Update to 1.8.5.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.8.5.
2021-05-04gnu: r-icobra: Update to 1.18.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.18.1.
2021-05-04gnu: r-interactionset: Update to 1.18.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.18.1.
2021-05-04gnu: r-systempiper: Update to 1.24.6.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-systempiper): Update to 1.24.6.
2021-05-04gnu: r-genomeinfodb: Update to 1.26.7.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.26.7.
2021-05-04gnu: r-biocgenerics: Update to 0.36.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.36.1.
2021-05-04gnu: r-ensembldb: Update to 2.14.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-ensembldb): Update to 2.14.1.
2021-05-04gnu: r-gage: Update to 2.40.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-gage): Update to 2.40.2.
2021-05-04gnu: r-annotationhub: Update to 2.22.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-annotationhub): Update to 2.22.1.
2021-05-04gnu: r-future-apply: Set HOME directory variable.Ricardo Wurmus
* gnu/packages/cran.scm (r-future-apply)[arguments]: Add phase "set-HOME".
2021-05-04gnu: r-matrixstats: Set HOME directory variable.Ricardo Wurmus
* gnu/packages/statistics.scm (r-matrixstats)[arguments]: Add phase "set-HOME".
2021-05-04gnu: sequoia: Update to 1.1.0.Hartmut Goebel
* gnu/packages/sequoia.scm (sequoia): Update to 1.1.0. [arguments]: Remove phase "package", add phases "fix-rand-dependency" and "fix-permissions".
2021-05-04gnu: r-pcapp: Update to 1.9-74.Ricardo Wurmus
* gnu/packages/statistics.scm (r-pcapp): Update to 1.9-74.
2021-05-04gnu: r-sfsmisc: Update to 1.1-11.Ricardo Wurmus
* gnu/packages/statistics.scm (r-sfsmisc): Update to 1.1-11.
2021-05-04gnu: r-tidyselect: Update to 1.1.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-tidyselect): Update to 1.1.1.
2021-05-04gnu: r-viridislite: Update to 0.4.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-viridislite): Update to 0.4.0.
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