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2021-08-11gnu: pigx-rnaseq: Update to 0.0.18....* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.18. Ricardo Wurmus
2021-07-27gnu: linux-libre 4.4: Update to 4.4.280....* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.280. (linux-libre-4.4-pristine-source): Update hash. Leo Famulari
2021-07-27gnu: Duplicity: Depend on python-paramiko....Fixes <https://bugs.gnu.org/49979>. * gnu/packages/backup.scm (duplicity)[native-inputs]: Add python-paramiko. Leo Famulari
2021-08-11gnu: Add unclutter-xfixes...* gnu/packages/xdisorg.scm (unclutter-xfixes): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> iKaSeRo
2021-08-11transformations: 'with-patch' works on non-origin sources....Fixes <https://issues.guix.gnu.org/49697>. Reported by Philippe Swartvagher <philippe.swartvagher@inria.fr>. * guix/transformations.scm (patched-source): New procedure. (transform-package-patches)[package-with-extra-patches]: Use it when (package-source p) is not an origin. * tests/transformations.scm ("options->transformation, with-commit + with-patch"): New test. Ludovic Courtès
2021-08-11gnu: rocm-opencl-runtime: Shorten patch file name....This appeases 'guix lint -c patch-file-names'. * gnu/packages/patches/rocm-opencl-runtime-3.10.0-add-rocclr-include-directories.patch: Rename to... * gnu/packages/patches/rocm-opencl-runtime-3.10.0-includes.patch: ... this. * gnu/packages/rocm.scm (rocm-opencl-runtime)[source]: Adjust accordingly. * gnu/local.mk (dist_patch_DATA): Likewise. Ludovic Courtès
2021-08-11gnu: rocm-opencl-runtime: Use a non-redirecting source URL....* gnu/packages/rocm.scm (rocm-opencl-runtime)[source]: Use 'home-page' as the URL; since it lacks the ".git" prefix, that placates 'guix lint'. Ludovic Courtès
2021-08-11gnu: emacs-vertico: Update to 0.14....* gnu/packages/emacs-xyz.scm (emacs-vertico): Update to 0.14. Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at> Xinglu Chen
2021-08-11gnu: emacs-marginalia: Update to 0.8....* gnu/packages/emacs-xyz.scm (emacs-marginalia): Update to 0.8. Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at> Xinglu Chen
2021-08-11gnu: emacs-consult: Update to 0.10....* gnu/packages/emacs-xyz.scm (emacs-consult): Update to 0.10. Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at> Xinglu Chen
2021-08-11gnu: emacs-corfu: Update to 0.11....* gnu/packages/emacs-xyz.scm (emacs-corfu): Update to 0.11. Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at> Xinglu Chen
2021-08-11gnu: python-aiorpcx: Update to 0.22.1....* gnu/packages/finance.scm (electrum)[inputs]: Use python-aiorpcx-0.18. * gnu/packages/python-web.scm (python-aiorpcx): Update to 0.22.1. (python-aiorpcx-0.18): New variable. Signed-off-by: 宋文武 <iyzsong@member.fsf.org> Milkey Mouse
2021-08-11gnu: emacs-project: Update to 0.6.1....* gnu/packages/emacs-xyz.scm (emacs-project): Update to 0.6.1. Signed-off-by: 宋文武 <iyzsong@member.fsf.org> Xinglu Chen
2021-08-11gnu: emacs-emms: Update to 7.6....* gnu/packages/emacs-xyz.scm (emacs-emms): Update to 7.6. Signed-off-by: 宋文武 <iyzsong@member.fsf.org> Xinglu Chen
2021-08-11gnu: icedove: Update to 78.13.0....* gnu/packages/gnuzilla.scm (icedove): Update to 78.13.0. Jonathan Brielmaier
2021-08-11gnu: uBlock Origin: Update to 1.37.2....* gnu/packages/browser-extensions.scm (uassets): Update to 54e217d90. (ublock-origin): Update to 1.37.2. Marius Bakke
2021-08-11gnu: ungoogled-chromium: Update to 92.0.4515.131-0.4a9534c....* gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for 92. (%chromium-version): Set to 92.0.4515.131. (%ungoogled-revision): Set to 92.0.4515.131-1-0-g4a9534c. (%ungoogled-origin): Update hash. (ungoogled-chromium-snippet): Remove obsolete substitution and trailing #t. (ungoogled-chromium)[source]: Update hash. [arguments]: Remove trailing #t's. [native-inputs]: Remove PYTHON-BEAUTIFULSOUP4 and PYTHON-HTML5LIB. Add PYTHON-WRAPPER. [inputs]: Add LINUX-LIBRE-HEADERS-5.10. Marius Bakke
2021-08-11gnu: libcacard: Enable PC/SC support....* gnu/packages/spice.scm (libcacard)[propagated-inputs]: Add PCSC-LITE. Marius Bakke
2021-08-10gnu: icecat: Update to 78.13.0-guix0-preview1 [security fixes]....Includes fixes for CVE-2021-29980, CVE-2021-29984, CVE-2021-29985, CVE-2021-29986, CVE-2021-29988, and CVE-2021-29989. * gnu/packages/gnuzilla.scm (%icecat-version, %icecat-build-id): Update. (icecat-source): Update upstream source hash. Mark H Weaver
2021-07-27gnu: Borg: Use bundled msgpack....This is an old and customized version of msgpack-python. * gnu/packages/backup.scm (borg)[source]: In the snippet, don't delete the bundled 'msgpack' directory, and remove the related substition applied to setup.py. [arguments]: Remove the 'use-system-msgpack' phase. [inputs]: Remove 'python-msgpack-transitional'. Leo Famulari
2021-07-27gnu: mit-krb5: Update to 1.18.4 [fixes CVE-2021-36222]....* gnu/packages/kerberos.scm (mit-krb5)[replacement]: New field. (mit-krb5-1.18.4): New variable. Leo Famulari
2021-08-10gnu: python-libusb1: Update to 1.9.3....* gnu/packages/libusb.scm (python-libusb1): Update to 1.9.3. [inputs], [propagated-inputs]: Change libusb to a propagated-input. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Milkey Mouse
2021-08-10gnu: Add task-spooler....* gnu/packages/task-runners.scm (task-spooler): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Ivan Gankevich
2021-08-10gnu: sendmail: Install executables to $prefix/sbin and $prefix/bin directories....Currently "sendmail" installs executables to $PREFIX/usr/sbin and $PREFIX/usr/bin directories. This patch changes them to $PREFIX/sbin and $PREFIX/bin respectively. Also this patch fixes broken symlinks in $PREFIX/bin and updates package definitions that use old sendmail paths. * gnu/packages/mail.scm (sendmail): Set new paths. [arguments]<#:phases>{replace-/usr}: Remove /usr prefix. [arguments]<#:phases>{post-install}: Fix broken symlinks [arguments]<#:phases>{configure}: Set paths without /usr prefix. * gnu/packages/mail.scm (claws-mail): Use new sendmail paths. * gnu/packages/version-control.scm (python-git-multimail): Use new sendmail paths. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Ivan Gankevich
2021-08-10etc/committer: Pass command-line arguments to main....* etc/committer.scm.in: Call main with command line arguments. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Sarah Morgensen
2021-08-10etc/committer: Support custom commit messages....Allow custom change commit messages by supplying a commit message and optionally a changelog message as arguments. * etc/committer.scm.in (break-string-with-newlines) (custom-commit-message): New procedures. (main)[change-commit-message*]: New sub-procedure. Use them. (main): Use it. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Sarah Morgensen
2021-08-10gnu: rocksdb: set TEST_TMPDIR for faster test i/o....The rocksdb test can take an egregious amount of time on a spinning HDD. This will inherit guixbuild's /tmp mount for the rocksdb testing directory. * gnu/packages/databases.scm (rocksdb)[arguments]: set TEST_TMPDIR for check phase Signed-off-by: Ludovic Courtès <ludo@gnu.org> Ryan Sundberg
2021-08-10gnu: dealii-openmpi: Add Trilinos dependency....* gnu/packages/maths.scm (trilinos-for-dealii-openmpi): New variable. (dealii-openmpi)[propagated-inputs]: Add trilinos-for-dealii-openmpi. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Paul A. Patience
2021-08-10store: Add 'map/accumulate-builds' cutoff to address pathological cases....Fixes <https://bugs.gnu.org/49439>. Reported by Ricardo Wurmus <rekado@elephly.net>. Previously, a command such as: guix environment pigx-scrnaseq could lead to unbounded memory growth and could even fail to complete when some items are missing from the store. This was because 'map/accumulate-builds' callees would keep making .drv build requests that were turned into <unresolved> nodes; in this case, there are often many identical build requests. Stopping accumulation earlier allows us to unlock the situation by proceeding with the first few build requests instead of spinning until we've accumulated all the build requests. * guix/store.scm (map/accumulate-builds): Define 'accumulation-cutoff'. Use a loop when iterating over LST and maintain a counter of unresolved nodes met so far; return when the counter exceeds ACCUMULATION-CUTOFF. Ludovic Courtès
2021-08-10gnu: mu: Update to 1.6.2....* gnu/packages/mail.scm (mu): Update to 1.6.2. [inputs]: Use guile-3.0. [arguments]: Remove autotools substitutions for guile-2.2. Update 'patch-bin-sh-in-tests phase to new tests. Do not return #t in the remaining phases. Pierre Langlois
2021-08-10gnu: gcompris-qt: Switch to qt-build-system....* gnu/packages/education.scm (gcompris-qt)[build-system]: Switch from cmake-build-system to qt-build-system. [arguments]: Remove custom 'wrap-executable phase. Efraim Flashner
2021-08-10gnu: gcompris-qt: Update to 1.1....* gnu/packages/education.scm (gcompris-qt): Update to 1.1. Efraim Flashner
2021-08-10scripts: publish: Remove leftover comment....* guix/scripts/publish.scm (render-narinfo/cached): Remove leftover comment. Mathieu Othacehe
2021-08-10scripts: publish: Remove unused argument.Mathieu Othacehe
2021-08-10gnu: python-aiorpcx: Update to 0.18.7....* gnu/packages/python-web.scm (python-aiorpcx): Update to 0.18.7. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Mike Rosset
2021-07-27gnu: fetchmail: Update to 6.4.21 [fixes CVE-2021-36386]....* gnu/packages/mail.scm (fetchmail): Update to 6.4.21. Signed-off-by: Leo Famulari <leo@famulari.name> Xinglu Chen
2021-08-09inferior: 'cached-channel-instance' no longer calls 'show-what-to-build'....This allows the user of 'cached-channel-instance' to install the build handler of its choice. In particular, it allows "guix time-machine" to install a build notifier with the right options instead of using the defaults that 'cached-channel-instance' would pass to 'show-what-to-build*'. * guix/inferior.scm (cached-channel-instance): Remove call to 'show-what-to-build*'. (inferior-for-channels): Wrap body in 'with-build-handler'. * guix/scripts/time-machine.scm (guix-time-machine): Use 'with-build-handler'. Ludovic Courtès
2021-08-09self: Use default config variable values for derivations....The value of %localstatedir, %storedir, and %sysconfdir is known to have no impact on the compilation of the Guix modules. Thus, explicitly build those modules against a (guix config) module that uses all the default values. That way, a Guix installation that uses different config values can still benefit from substitutes. Reported by Ricardo Wurmus. * guix/self.scm (%default-config-variables): New variable. (make-config.scm): Add #:config-variables and honor it. (compiled-guix)[*core-modules*]: Pass #:config-variables to 'make-config.scm'. Ludovic Courtès
2021-08-09gnu: electrum: Update to 4.1.5....* gnu/packages/finance.scm (electrum): Update to 4.1.5. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Milkey Mouse
2021-08-09gnu: python-coveralls: Update to 3.2.0....* gnu/packages/python-check.scm (python-coveralls): Update to 3.2.0. Efraim Flashner
2021-08-09gnu: rocminfo: Add description....* gnu/packages/rocm.scm (rocminfo) [description]: Add it. Lars-Dominik Braun
2021-08-09gnu: rocminfo: Static references to lsmod and grep....Fixes usage in a pure environment. * gnu/packages/rocm.scm (rocminfo) [arguments]: Add #:phases. Lars-Dominik Braun
2021-07-27gnu: IlmBase and OpenEXR: Update to 2.5.7....* gnu/packages/graphics.scm (ilmbase): Update to 2.5.7. Leo Famulari
2021-07-27gnu: dav1d: Update to 0.9.1....* gnu/packages/video.scm (dav1d): Update to 0.9.1. Leo Famulari
2021-07-27gnu: libaom: Update to 3.1.2....* gnu/packages/video.scm (libaom): Update to 3.1.2. Leo Famulari
2021-07-27gnu: linux-libre 4.4: Update to 4.4.279....* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.279. (linux-libre-4.4-pristine-source): Update hash. Leo Famulari
2021-07-27gnu: linux-libre 4.9: Update to 4.9.279....* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.279. (linux-libre-4.9-pristine-source): Update hash. Leo Famulari
2021-07-27gnu: linux-libre 4.14: Update to 4.14.243....* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.243. (linux-libre-4.14-pristine-source): Update hash. Leo Famulari
2021-07-27gnu: linux-libre 4.19: Update to 4.19.202....* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.202. (linux-libre-4.19-pristine-source): Update hash. Leo Famulari
2021-07-27gnu: linux-libre 5.4: Update to 5.4.139....* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.139. (linux-libre-5.4-pristine-source): Update hash. Leo Famulari