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2021-01-19gnu: esbuild: Update to 0.8.32....* gnu/packages/web.scm (esbuild): Update to 0.8.32. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Ryan Prior
2021-01-19environment: Fix '--root' option with relative file name....The path normalization of `--root` option of `guix environment` was buggy as it appended full argument after normalized directory. This patch fixes it. * guix/scripts/environment.scm (register-gc-root): Fix gc-root path normalization. * tests/guix-environment.sh: Add test. Co-authored-by: Ludovic Courtès <ludo@gnu.org> JOULAUD François
2021-01-19modules: Recognize #:re-export-and-replace....* guix/modules.scm (extract-dependencies): Recognize #:re-export-and-replace, which was introduced in Guile 3.0. Ludovic Courtès
2021-01-19system: Rename 'disk-image' command 'image'....* guix/scripts/system.scm (system-derivation-for-action): Rename 'disk-image' command 'image'. Warn when using the now deprecated 'disk-image' command. (show-help): Adapt accordingly. (guix-system): Ditto. * tests/guix-system.sh: Ditto. * gnu/system/examples/bare-hurd.tmpl: Ditto. * doc/guix.texi (Building the Installation Image, Building the Installation Image for ARM Boards, Invoking guix pack, Invoking guix system): Adapt documentation. Mathieu Othacehe
2021-01-19gnu: terminology: Update to 1.9.0....* gnu/packages/enlightenment.scm (terminology): Update to 1.9.0. [arguments]: Add configure-flag to find more binaries. Efraim Flashner
2021-01-19doc: Fix typo....Fixes <http://bugs.gnu.org/35004>. * doc/guix.texi (Invoking guix package): Fix typo. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Joshua C. Randall
2021-01-19gnu: freebayes: Update source, home-page URIs....* gnu/packages/bioinformatics.scm (freebayes)[source]: Update to new upstream URI. [home-page]: Same. Efraim Flashner
2021-01-19gnu: terminator: Adjust description....* gnu/packages/gnome.scm (terminator)[description): Remove stray '+'. Efraim Flashner
2021-01-19gnu: freebayes: Don't include vcflib sources....* gnu/packages/bioinformatics.scm (freebayes)[native-inputs]: Remove vcflib-source, intervaltree-source. Move vcflib ... [inputs]: ... to here. [arguments]: Adjust 'patch-source and 'unpack-submodule-sources for changes in vendored code. * gnu/packages/patches/freebayes-devendor-deps.patch: Update patch. Efraim Flashner
2021-01-19gnu: vcflib: Add pkg-config file....* gnu/packages/bioinformatics.scm (vcflib)[arguments]: Add phase to create pkg-config file. Efraim Flashner
2021-01-19gnu: vcflib: Build a shared library....* gnu/packages/bioinformatics.scm (vcflib)[arguments]: Add phase to build a shared library instead of a static one. Efraim Flashner
2021-01-19gnu: freebayes: Extend test timeout on slower architectures....* gnu/packages/bioinformatics.scm (freebayes)[arguments]: Use custom 'check phase on aarch64-linux and armhf-linux to extend the test timeout. Efraim Flashner
2021-01-19gnu: xpra: Add more encoding options....* gnu/packages/xorg.scm (xpra)[inputs]: Add libx264, x265, libvpx. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Michael Rohleder
2021-01-19gnu: xpra: Update to 4.0.6....* gnu/packages/xorg.scm (xpra): Update to 4.0.6. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Michael Rohleder
2021-01-18gnu: libid3tag: Add comment justifying the 'install-pkg-config phase....* gnu/packages/mp3.scm (libid3tag)[arguments]: Add a comment about Audacity requiring a pkg-config file for libid3tag. Kei Kebreau
2021-01-18gnu: libmad: Add comment justifying the 'install-pkg-config phase....* gnu/packages/mp3.scm (libmad)[arguments]: Add a comment about Audacity requiring a pkg-config file for libmad. Kei Kebreau
2021-01-18gnu: Add guile-libyaml....* gnu/packages/guile-xyz.scm (guile-libyaml): New variable. Ricardo Wurmus
2021-01-18gnu: Add r-snapatac....* gnu/packages/bioinformatics.scm (r-snapatac): New variable. Mădălin Ionel Patrașcu
2021-01-18gnu: mafft: Update to 7.475....* gnu/packages/bioinformatics.scm (mafft): Update to 7.475. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Mădălin Ionel Patrașcu
2021-01-18gnu: musl: Update to 1.2.2....* gnu/packages/musl.scm (musl): Update to 1.2.2. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Vincent Legoll
2021-01-18gnu: ruby-bio-vcf: Rename to bio-vcf....This package is widely known in select circles specifically as 'bio-vcf'. * gnu/packages/bioinformatics.scm (ruby-bio-vcf): Rename to bio-vcf. Efraim Flashner
2021-01-18gnu: Add ruby-bio-vcf....* gnu/packages/bioinformatics.scm (ruby-bio-vcf): New variable. Efraim Flashner
2021-01-18gnu: linux-libre 4.4: Update to 4.4.252....* gnu/packages/linux.scm (linux-libre-4.4-version): Update to 4.4.252. (linux-libre-4.4-pristine-source): Update hash. Leo Famulari
2021-01-18gnu: linux-libre 4.9: Update to 4.9.252....* gnu/packages/linux.scm (linux-libre-4.9-version): Update to 4.9.252. (linux-libre-4.9-pristine-source): Update hash. Leo Famulari
2021-01-18gnu: linux-libre 4.14: Update to 4.14.216....* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.216. (linux-libre-4.14-pristine-source): Update hash. Leo Famulari
2021-01-18gnu: linux-libre 4.19: Update to 4.19.168....* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.168. (linux-libre-4.19-pristine-source): Update hash. Leo Famulari
2021-01-18gnu: linux-libre 5.4: Update to 5.4.90....* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.90. (linux-libre-5.4-pristine-source): Update hash. Leo Famulari
2021-01-18gnu: linux-libre: Update to 5.10.8....* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.8. (linux-libre-5.10-pristine-source): Update hash. Leo Famulari
2021-01-18gnu: xapian, python-xapian-bindings: Update to 1.4.18....* gnu/packages/search.scm (xapian, python-xapian-bindings): Update to 1.4.18. Tobias Geerinckx-Rice
2021-01-18gnu: iptables: Update to 1.8.7....* gnu/packages/linux.scm (iptables): Update to 1.8.7. Tobias Geerinckx-Rice
2021-01-18gnu: nftables: Update to 0.9.8....* gnu/packages/linux.scm (nftables): Update to 0.9.8. Tobias Geerinckx-Rice
2021-01-18gnu: libnftnl: Update to 1.1.9....* gnu/packages/linux.scm (libnftnl): Update to 1.1.9. Tobias Geerinckx-Rice
2021-01-18gnu: ktouch: Update to 20.12.1....* gnu/packages/education.scm (ktouch): Update to 20.12.1. Tobias Geerinckx-Rice
2021-01-17gnu: wxmaxima: Update to 20.12.2....* gnu/packages/maths.scm (wxmaxima): Update to 20.12.2. [arguments]: Remove #:test-target and disable tests. Remove 'pre-check phase. [native-inputs]: Remove xorg-server-for-tests. [inputs]: Add libomp. Kei Kebreau
2021-01-17gnu: gnuplot: Update to 5.4.1....* gnu/packages/maths.scm (gnuplot): Update to 5.4.1. [arguments]: Set GNUTERM in #:make-flags. Kei Kebreau
2021-01-17gnu: Add emacs-org-mime...* gnu/packages/emacs-xyz.scm (emacs-org-mime): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr> Ryan Desfosses
2021-01-17gnu: nbd: Update to 3.21....* gnu/packages/networking.scm (nbd): Update to 3.21. Tobias Geerinckx-Rice
2021-01-17gnu: mblaze: Update to 1.1....* gnu/packages/mail.scm (mblaze): Update to 1.1. Tobias Geerinckx-Rice
2021-01-17gnu: keepassxc: Update to 2.6.3....* gnu/packages/password-utils.scm (keepassxc): Update to 2.6.3. Tobias Geerinckx-Rice
2021-01-17gnu: facter: Update to 4.0.49....* gnu/packages/admin.scm (facter): Update to 4.0.49. Tobias Geerinckx-Rice
2021-01-17gnu: inxi-minimal: Update to 3.2.02-2....* gnu/packages/admin.scm (inxi-minimal): Update to 3.2.02-2. Tobias Geerinckx-Rice
2021-01-17gnu: oil: Update to 0.8.6....* gnu/packages/shells.scm (oil): Update to 0.8.6. Tobias Geerinckx-Rice
2021-01-17gnu: pd: Update to 0.51-4....* gnu/packages/music.scm (pd): Update to 0.51-4. Tobias Geerinckx-Rice
2021-01-17gnu: libhandy: Update to 1.0.3....* gnu/packages/gnome.scm (libhandy): Update to 1.0.3. Tobias Geerinckx-Rice
2021-01-17gnu: php-fpm: Ensure no duplicate group....* gnu/services/web.scm (php-fpm-accounts): Ensure `php-fpm` group is not duplicated. Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at> Julien Lepiller
2021-01-17services: cups: reuse lp from %base-groups....* gnu/services/cups.scm (%cups-accounts): Try to reuse lp from %base-groups. Leo Prikler
2021-01-17gnu: grub: Use installed unicode font....* gnu/bootloader/grub.scm (setup-gfxterm): Remove parameter font-file. Refer to the installed font in /boot, not in the store. (font-file): Delete obsolete function. (install-grub): When populating a disk-image, install the unicode font, too. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org> Stefan
2021-01-17gnu: sbcl-cffi: Update to 0.23.0....* gnu/packages/lisp-xyz.scm (sbcl-cffi): Update to 0.23.0. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Aurora
2021-01-17gnu: freebayes: Update to 1.3.3....* gnu/packages/bioinformatics.scm (freebayes): Update to 1.3.3. [source]: Add patch. Add snippet to remove vendored library. [build-system]: Switch to meson-build-system. [inputs]: Remove bamtools. Add fastahack, smithwaterman, tabixpp. [native-inputs]: Remove procps, python-2, tabixpp source, smithwaterman source, multichoose source, fsom source, filevercmp source, fastahack source, bash-tap source. Add bash-tap, grep, pkg-config, simde, vcflib. [arguments]: Drop make-flags. Don't delete 'configure phase. Delete custom 'fix-tests, 'build-tabixpp-and-vcflib, 'fix-makefiles, 'install phases. Adjust 'unpack-submodule-sources phase to changed native-inputs. Add new 'patch-source phase. Efraim Flashner
2021-01-17gnu: multichoose: Install header files....* gnu/packages/bioinformatics.scm (multichoose)[arguments]: Adjust 'install phase to also install header files. Efraim Flashner
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