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2019-12-04gnu: r-bsgenome-hsapiens-ucsc-hg19-masked: Use bioconductor-uri.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-ucsc-hg19-masked)[source]: Use bioconductor-uri.
2019-12-04gnu: r-bsgenome-hsapiens-1000genomes-hs37d5: Use bioconductor-uri.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-1000genomes-hs37d5)[source]: Use bioconductor-uri. [arguments]: Enable substitution.
2019-12-04gnu: r-bsgenome-dmelanogaster-ucsc-dm3-masked: Use bioconductor-uri.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bsgenome-dmelanogaster-ucsc-dm3-masked)[source]: Use bioconductor-uri.
2019-12-04gnu: r-bsgenome-dmelanogaster-ucsc-dm3: Use bioconductor-uri.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bsgenome-dmelanogaster-ucsc-dm3)[source]: Use bioconductor-uri. [arguments]: Enable substitution.
2019-12-04gnu: r-bsgenome-dmelanogaster-ucsc-dm6: Use bioconductor-uri.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bsgenome-dmelanogaster-ucsc-dm6)[source]: Use bioconductor-uri. [arguments]: Permit substitution.
2019-12-04gnu: r-bsgenome-celegans-ucsc-ce10: Use bioconductor-uri.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bsgenome-celegans-ucsc-ce10)[source]: Use bioconductor-uri. [arguments]: Permit substitution.
2019-12-04gnu: emacs-olivetti: Update to 1.8.1.Brett Gilio
* gnu/packages/emacs-xyz.scm (emacs-olivetti): Update to 1.8.1. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-12-04gnu: emacs-irony-mode: Update to 1.4.0.Brett Gilio
* gnu/packages/emacs-xyz.scm (emacs-irony-mode): Update to 1.4.0. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-12-04gnu: emacs-elisp-demos: Update to 2019.12.01.Brett Gilio
* gnu/packages/emacs-xyz.scm (emacs-elisp-demos): Update to 2019.12.01. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-12-04gnu: emacs-doom-modeline: Update to 2.8.0.Brett Gilio
* gnu/packages/emacs-xyz.scm (emacs-doom-modeline): Update to 2.8.0. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-12-04gnu: python-pandas: Move to (gnu packages python-science).Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-pandas, python2-pandas): Move from here... * gnu/packages/python-science.scm (python-pandas, python2-pandas): ...to here. * gnu/packages/benchmark.scm, gnu/packages/databases.scm, gnu/packages/graph.scm, gnu/packages/parallel.scm, gnu/packages/serialization.scm: Import (gnu packages python-science).
2019-12-03gnu: handbrake: Upgrade to 1.3.0.Eric Bavier
* gnu/packages/patches/handbrake-opt-in-nvenc.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/video.scm (handbrake)[source]: Upgrade to 1.3.0. Remove patch. [native-inputs]: Remove cmake and curl. [inputs]: Add dav1d and numactl. [arguments]: Add "--disable-nvenc" to configure flags in place of patch. Adjust "bootstrap" phase in response to upstream changes. Add "patch-SHELL" and "relax-reqs" phases.
2019-12-04guix-install.sh: Use a deterministic umask.Tobias Geerinckx-Rice
Users with strict umasks (e.g. 0077) would end up with an unreadable /gnu (mode 0700) and no way to run guix. Reported by A. <@aaap:matrix.org> on #guix. * etc/guix-install.sh (main): Set umask before installing anything.
2019-12-03gnu: tcc: Add search paths and drop the wrapper.Andreas Enge
* gnu/packages/c.scm (tcc): Add native search paths. (tcc-wrapper): Remove variable.
2019-12-03gnu: cmocka: Update to 1.1.5.Tobias Geerinckx-Rice
* gnu/packages/check.scm (cmocka): Update to 1.1.5.
2019-12-03gnu: girara: Update to 0.3.3.Tobias Geerinckx-Rice
* gnu/packages/gtk.scm (girara): Update to 0.3.3.
2019-12-03gnu: libcdio: Update to 2.1.0.Tobias Geerinckx-Rice
* gnu/packages/cdrom.scm (libcdio): Update to 2.1.0.
2019-12-03gnu: libcdio-paranoia: Update to 10.2+2.0.0.Tobias Geerinckx-Rice
* gnu/packages/cdrom.scm (libcdio-paranoia): Update to 10.2+2.0.0.
2019-12-03gnu: libburn: Update to 1.5.2.Tobias Geerinckx-Rice
* gnu/packages/cdrom.scm (libburn): Update to 1.5.2.
2019-12-03gnu: r-rsqlite: Update to 2.1.3.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.1.3.
2019-12-03gnu: r-roxygen2: Update to 7.0.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-roxygen2): Update to 7.0.2.
2019-12-03gnu: r-testthat: Update to 2.3.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-testthat): Update to 2.3.1.
2019-12-03gnu: r-rspectra: Update to 0.16-0.Ricardo Wurmus
* gnu/packages/cran.scm (r-rspectra): Update to 0.16-0.
2019-12-03gnu: r-sjplot: Update to 2.8.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-sjplot): Update to 2.8.1.
2019-12-03gnu: r-bayesplot: Update to 1.7.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-bayesplot): Update to 1.7.1.
2019-12-03gnu: r-maptools: Update to 0.9-9.Ricardo Wurmus
* gnu/packages/cran.scm (r-maptools): Update to 0.9-9.
2019-12-03gnu: r-network: Update to 1.16.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-network): Update to 1.16.0.
2019-12-03gnu: r-dendextend: Update to 1.13.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-dendextend): Update to 1.13.2.
2019-12-03gnu: r-curl: Update to 4.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-curl): Update to 4.3.
2019-12-03Revert "doc: Fix typo in example."Efraim Flashner
This reverts commit 7b40d59114e1462d6d8140f325a66b12e91db667.
2019-12-03gnu: jp2a: Downgrade to 1.0.6.Efraim Flashner
* gnu/packages/image.scm (jp2a): Downgrade to 1.0.6. [source]: Download from Debian's sources. [inputs]: Add ncurses. [native-inputs]: Remove autoconf, automake, pkg-config.
2019-12-03gnu: toot: Make propagated-inputs regular inputs.Efraim Flashner
* gnu/packages/mastodon.scm (toot)[propagated-inputs]: Move all ... [inputs]: ... here.
2019-12-03gnu: toot: Add missing input.Efraim Flashner
* gnu/packages/mastodon.scm (toot)[propagated-inputs]: Add python-urwid.
2019-12-03gnu: emacs-diff-hl: Update to 1.8.7.Tobias Geerinckx-Rice
* gnu/packages/emacs-xyz.scm (emacs-diff-hl): Update to 1.8.7.
2019-12-03gnu: xlockmore: Update to 5.59.Tobias Geerinckx-Rice
* gnu/packages/xdisorg.scm (xlockmore): Update to 5.59.
2019-12-03gnu: exo: Update to 0.12.10.Tobias Geerinckx-Rice
* gnu/packages/xfce.scm (exo): Update to 0.12.10.
2019-12-03gnu: sysstat: Update to 12.2.0.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (sysstat): Update to 12.2.0.
2019-12-03gnu: mtr: Use @acronym{}.Tobias Geerinckx-Rice
* gnu/packages/networking.scm (mtr)[description]: Substitute @acronym for @dfn.
2019-12-03gnu: mtr: Don't use NAME in source URI.Tobias Geerinckx-Rice
* gnu/packages/networking.scm (mtr)[source]: Hard-code NAME.
2019-12-03gnu: mtr: Update to 0.93.Tobias Geerinckx-Rice
* gnu/packages/networking.scm (mtr): Update to 0.93. [native-inputs]: Remove now-unnecessary autoconf.
2019-12-03gnu: microcom: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/microcom.scm (microcom)[home-page]: Use HTTPS.
2019-12-03gnu: microcom: Update to 2017.03.0.Tobias Geerinckx-Rice
* gnu/packages/microcom.scm (microcom): Update to 2017.03.0.
2019-12-03gnu: microcom: Use GIT-FILE-NAME.Tobias Geerinckx-Rice
* gnu/packages/microcom.scm (microcom)[source]: Use GIT-FILE-NAME.
2019-12-03gnu: less: Update to 551.Tobias Geerinckx-Rice
* gnu/packages/less.scm (less): Update to 551.
2019-12-03gnu: less: Add upstream source URI.Tobias Geerinckx-Rice
* gnu/packages/less.scm (less)[source]: Add the author's site.
2019-12-03gnu: nsd: Update to 4.2.3.Tobias Geerinckx-Rice
* gnu/packages/dns.scm (nsd): Update to 4.2.3.
2019-12-03gnu: pugixml: Update to 1.10.Tobias Geerinckx-Rice
* gnu/packages/xml.scm (pugixml): Update to 1.10. [source]: Remove obsolete patch. * gnu/packages/patches/pugixml-versioned-libdir.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2019-12-03gnu: eid-mw: Update to 4.4.23.Tobias Geerinckx-Rice
* gnu/packages/security-token.scm (eid-mw): Update to 4.4.23.
2019-12-03gnu: console-setup: Update to 1.194.Tobias Geerinckx-Rice
* gnu/packages/xorg.scm (console-setup): Update to 1.194.
2019-12-03gnu: xclock: Don't use NAME in source URI.Tobias Geerinckx-Rice
* gnu/packages/xorg.scm (xclock)[source]: Hard-code NAME.
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